Wall clock time and date at job start Mon Mar 30 2020 02:12:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30945 * 1 3 3 Si 1.86800 * 119.99717 * 2 1 4 4 H 1.48507 * 109.47020 * 239.99746 * 3 2 1 5 5 H 1.48497 * 109.47264 * 359.97438 * 3 2 1 6 6 H 1.48496 * 109.47448 * 119.99515 * 3 2 1 7 7 C 1.39877 * 120.00233 * 179.97438 * 2 1 3 8 8 H 1.08009 * 119.99920 * 180.02562 * 7 2 1 9 9 C 1.40725 * 120.00257 * 0.02562 * 7 2 1 10 10 C 1.47544 * 128.82150 * 0.02672 * 9 7 2 11 11 N 1.29794 * 105.56078 * 180.22779 * 10 9 7 12 12 O 1.20523 * 113.42126 * 359.58195 * 11 10 9 13 13 C 1.34473 * 113.17900 * 0.44634 * 12 11 10 14 14 C 1.46952 * 127.25690 * 179.76603 * 13 12 11 15 15 C 1.41390 * 126.06422 * 359.68633 * 14 13 12 16 16 C 1.34847 * 107.88680 * 179.86326 * 15 14 13 17 17 N 1.35795 * 108.05483 * 0.39883 * 16 15 14 18 18 H 0.96994 * 125.92311 * 179.76884 * 17 16 15 19 19 N 1.32262 * 126.06636 * 179.97438 * 14 13 12 20 20 H 0.97000 * 120.00524 * 0.02562 * 1 2 3 21 21 H 1.08002 * 127.21426 * 359.95450 * 10 9 7 22 22 H 1.07997 * 126.06083 * 359.97438 * 15 14 13 23 23 H 1.07998 * 125.97781 * 180.17806 * 16 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3095 0.0000 0.0000 3 14 2.2434 1.6178 0.0000 4 1 3.0972 1.6964 -1.2125 5 1 1.2784 2.7464 -0.0006 6 1 3.0970 1.6966 1.2125 7 6 2.0089 -1.2113 0.0005 8 1 3.0890 -1.2113 0.0010 9 6 1.3054 -2.4301 0.0005 10 6 -0.1526 -2.6565 -0.0005 11 7 -0.3048 -3.9455 0.0049 12 8 0.7373 -4.5510 0.0010 13 6 1.8160 -3.7480 0.0015 14 6 3.2280 -4.1550 0.0022 15 6 3.7112 -5.4837 0.0088 16 6 5.0588 -5.4344 0.0041 17 7 5.4321 -4.1288 0.0039 18 1 6.3438 -3.7976 0.0041 19 7 4.2723 -3.3434 0.0022 20 1 -0.4851 0.8400 -0.0004 21 1 -0.9300 -1.9068 -0.0008 22 1 3.1080 -6.3795 0.0146 23 1 5.7248 -6.2846 0.0045 RHF calculation, no. of doubly occupied orbitals= 36 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259554797.mol2 23 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:12:18 Heat of formation + Delta-G solvation = 98.123472 kcal Electronic energy + Delta-G solvation = -12548.784712 eV Core-core repulsion = 10172.713648 eV Total energy + Delta-G solvation = -2376.071064 eV No. of doubly occupied orbitals = 36 Molecular weight (most abundant/longest-lived isotopes) = 205.059 amu Computer time = 0.17 seconds Orbital eigenvalues (eV) -44.56572 -41.48416 -36.27493 -33.52349 -33.27633 -30.83115 -30.62473 -28.13369 -23.69205 -23.46105 -21.73100 -20.69858 -19.32746 -18.72134 -17.75025 -17.07661 -16.66684 -15.55575 -15.16674 -14.66729 -14.32318 -14.20736 -13.38536 -13.08952 -12.88516 -12.77555 -11.93830 -11.69843 -11.62757 -11.08666 -11.03310 -10.41788 -9.62533 -9.26725 -8.83480 -6.45119 0.49901 1.33841 1.37805 1.45824 1.51669 1.91176 2.10271 2.17487 2.40758 3.07259 3.24559 4.12087 4.16363 4.47144 4.53706 4.78502 5.00483 5.15717 5.30199 5.38976 5.63467 5.86938 6.33398 6.54290 6.69898 6.76985 7.00591 8.07588 8.18613 Molecular weight = 205.06amu Principal moments of inertia in cm(-1) A = 0.031339 B = 0.012858 C = 0.009147 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 893.235756 B = 2177.108910 C = 3060.500903 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.819 5.819 2 C 0.028 3.972 3 Si 1.003 2.997 4 H -0.259 1.259 5 H -0.258 1.258 6 H -0.259 1.259 7 C -0.420 4.420 8 H 0.096 0.904 9 C 0.016 3.984 10 C -0.055 4.055 11 N -0.388 5.388 12 O 0.072 5.928 13 C -0.233 4.233 14 C 0.180 3.820 15 C -0.302 4.302 16 C 0.085 3.915 17 N -0.482 5.482 18 H 0.451 0.549 19 N -0.335 5.335 20 H 0.299 0.701 21 H 0.198 0.802 22 H 0.152 0.848 23 H 0.231 0.769 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.322 -2.592 0.001 9.676 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.445 5.445 2 C -0.188 4.188 3 Si 0.822 3.178 4 H -0.184 1.184 5 H -0.182 1.182 6 H -0.184 1.184 7 C -0.449 4.449 8 H 0.114 0.886 9 C 0.008 3.992 10 C -0.237 4.237 11 N -0.091 5.091 12 O 0.001 5.999 13 C -0.295 4.295 14 C 0.019 3.981 15 C -0.331 4.331 16 C -0.061 4.061 17 N -0.193 5.193 18 H 0.297 0.703 19 N -0.163 5.163 20 H 0.110 0.890 21 H 0.215 0.785 22 H 0.169 0.831 23 H 0.247 0.753 Dipole moment (debyes) X Y Z Total from point charges 8.460 -2.068 0.007 8.709 hybrid contribution 0.446 0.566 -0.003 0.720 sum 8.906 -1.502 0.004 9.032 Atomic orbital electron populations 1.69608 1.09032 1.31700 1.34131 1.27068 0.95867 1.05149 0.90719 0.84921 0.78479 0.74183 0.80172 1.18375 1.18224 1.18372 1.19307 0.95704 0.88973 1.40930 0.88575 1.20480 0.91142 0.93056 0.94490 1.26675 0.98011 0.91298 1.07673 1.72874 1.07286 1.10404 1.18543 1.84131 1.09273 1.34023 1.72451 1.20648 0.86650 0.88420 1.33797 1.18917 0.88111 0.92866 0.98239 1.21768 0.95490 0.96327 1.19552 1.23174 0.95675 0.88804 0.98446 1.46487 1.08126 1.04435 1.60274 0.70267 1.77804 0.91308 1.17256 1.29977 0.89020 0.78514 0.83059 0.75289 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.82 -41.06 10.64 21.82 0.23 -40.83 14 2 C 0.03 1.41 5.49 85.22 0.47 1.88 14 3 Si 1.00 37.71 29.56 68.60 2.03 39.74 14 4 H -0.26 -9.59 7.11 99.48 0.71 -8.89 14 5 H -0.26 -8.87 7.11 99.48 0.71 -8.16 14 6 H -0.26 -9.59 7.11 99.48 0.71 -8.88 14 7 C -0.42 -23.27 9.18 23.27 0.21 -23.05 14 8 H 0.10 5.30 6.63 -2.91 -0.02 5.28 14 9 C 0.02 0.90 6.26 -19.45 -0.12 0.78 14 10 C -0.06 -3.11 11.23 87.45 0.98 -2.13 14 11 N -0.39 -21.24 11.92 -52.68 -0.63 -21.87 14 12 O 0.07 3.91 11.10 67.95 0.75 4.66 14 13 C -0.23 -12.84 7.51 25.32 0.19 -12.65 14 14 C 0.18 8.62 7.09 42.14 0.30 8.92 14 15 C -0.30 -11.08 10.77 22.27 0.24 -10.84 14 16 C 0.09 2.25 11.98 83.30 1.00 3.25 14 17 N -0.48 -14.64 7.38 -57.37 -0.42 -15.06 14 18 H 0.45 9.51 8.96 -213.34 -1.91 7.60 14 19 N -0.34 -15.02 11.35 -48.58 -0.55 -15.57 14 20 H 0.30 13.25 8.30 -92.71 -0.77 12.48 14 21 H 0.20 10.81 6.28 -2.91 -0.02 10.79 14 22 H 0.15 5.07 8.06 -2.91 -0.02 5.04 14 23 H 0.23 2.98 8.06 -2.91 -0.02 2.96 14 Total: -1.00 -68.60 219.07 4.03 -64.57 By element: Atomic # 1 Polarization: 18.86 SS G_CDS: -0.65 Total: 18.22 kcal Atomic # 6 Polarization: -37.12 SS G_CDS: 3.27 Total: -33.86 kcal Atomic # 7 Polarization: -91.96 SS G_CDS: -1.37 Total: -93.33 kcal Atomic # 8 Polarization: 3.91 SS G_CDS: 0.75 Total: 4.66 kcal Atomic # 14 Polarization: 37.71 SS G_CDS: 2.03 Total: 39.74 kcal Total: -68.60 4.03 -64.57 kcal The number of atoms in the molecule is 23 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259554797.mol2 23 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 162.693 kcal (2) G-P(sol) polarization free energy of solvation -68.604 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 94.089 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.035 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.570 kcal (6) G-S(sol) free energy of system = (1) + (5) 98.123 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.17 seconds