Wall clock time and date at job start Mon Mar 30 2020 02:01:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30746 * 1 3 3 Si 1.86793 * 120.00187 * 2 1 4 4 H 1.48498 * 109.47669 * 89.99475 * 3 2 1 5 5 H 1.48499 * 109.47509 * 210.00110 * 3 2 1 6 6 H 1.48510 * 109.47153 * 329.99918 * 3 2 1 7 7 C 1.40216 * 120.00133 * 179.97438 * 2 1 3 8 8 H 1.08000 * 119.99852 * 20.11514 * 7 2 1 9 9 C 1.39874 * 120.00588 * 200.11693 * 7 2 1 10 10 C 1.36948 * 124.81239 * 194.01945 * 9 7 2 11 11 C 1.39672 * 114.96477 * 180.02562 * 10 9 7 12 12 C 1.41998 * 128.85744 * 179.97438 * 11 10 9 13 13 C 1.36531 * 118.83320 * 179.97438 * 12 11 10 14 14 C 1.38758 * 119.70877 * 0.02562 * 13 12 11 15 15 N 1.31455 * 121.14393 * 359.97438 * 14 13 12 16 16 C 1.33306 * 122.07987 * 0.02562 * 15 14 13 17 17 S 1.75456 * 124.80390 * 13.70844 * 9 7 2 18 18 H 0.97003 * 119.99884 * 174.75791 * 1 2 3 19 19 H 1.08003 * 122.52105 * 0.02562 * 10 9 7 20 20 H 1.07997 * 120.58414 * 359.97438 * 12 11 10 21 21 H 1.07995 * 120.14557 * 179.97438 * 13 12 11 22 22 H 1.08001 * 119.42967 * 179.97438 * 14 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3075 0.0000 0.0000 3 14 2.2415 1.6176 0.0000 4 1 2.4889 2.0465 1.4000 5 1 3.5390 1.4401 -0.7000 6 1 1.4389 2.6527 -0.7001 7 6 2.0086 -1.2143 0.0005 8 1 1.5180 -2.1212 -0.3207 9 6 3.3433 -1.2512 0.4172 10 6 4.1992 -2.2994 0.2071 11 6 5.4889 -2.1176 0.7116 12 6 6.5983 -3.0024 0.6607 13 6 7.7783 -2.6121 1.2260 14 6 7.8709 -1.3688 1.8350 15 7 6.8399 -0.5545 1.8786 16 6 5.6609 -0.8758 1.3457 17 16 4.1604 0.0423 1.2762 18 1 -0.4850 -0.8366 -0.0768 19 1 3.8996 -3.1991 -0.3098 20 1 6.5103 -3.9671 0.1834 21 1 8.6355 -3.2685 1.1999 22 1 8.8064 -1.0647 2.2811 RHF calculation, no. of doubly occupied orbitals= 33 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259568488.mol2 22 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:01:22 Heat of formation + Delta-G solvation = 20.844974 kcal Electronic energy + Delta-G solvation = -10469.396226 eV Core-core repulsion = 8500.434235 eV Total energy + Delta-G solvation = -1968.961991 eV No. of doubly occupied orbitals = 33 Molecular weight (most abundant/longest-lived isotopes) = 205.026 amu Computer time = 0.15 seconds Orbital eigenvalues (eV) -39.01555 -35.35872 -33.58892 -31.30258 -29.57420 -25.57114 -23.12928 -21.75560 -19.43183 -19.06039 -16.93153 -15.45709 -15.32805 -14.33292 -14.12912 -13.41625 -13.18291 -12.63940 -12.13522 -11.97606 -11.66907 -11.13584 -10.89366 -10.51035 -10.19436 -9.62527 -9.34908 -9.28056 -8.43368 -8.00452 -7.70647 -6.92073 -4.87580 1.73534 2.05272 2.26434 2.88503 3.01519 3.16441 3.42003 3.46160 3.70894 4.50269 4.84590 5.49767 5.55419 5.82695 6.10292 6.20958 6.68531 6.85869 6.92446 6.96849 7.14307 7.35880 7.56562 7.70408 7.88330 8.14157 8.82369 9.41051 Molecular weight = 205.03amu Principal moments of inertia in cm(-1) A = 0.062258 B = 0.012082 C = 0.010430 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 449.635241 B = 2317.021640 C = 2683.860024 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.766 5.766 2 C 0.046 3.954 3 Si 0.970 3.030 4 H -0.231 1.231 5 H -0.222 1.222 6 H -0.240 1.240 7 C -0.427 4.427 8 H 0.101 0.899 9 C 0.059 3.941 10 C -0.360 4.360 11 C -0.013 4.013 12 C -0.124 4.124 13 C -0.151 4.151 14 C 0.022 3.978 15 N -0.437 5.437 16 C -0.026 4.026 17 S 0.015 5.985 18 H 0.297 0.703 19 H 0.115 0.885 20 H 0.116 0.884 21 H 0.117 0.883 22 H 0.140 0.860 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.995 -0.445 -0.075 5.015 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.385 5.385 2 C -0.181 4.181 3 Si 0.790 3.210 4 H -0.157 1.157 5 H -0.145 1.145 6 H -0.165 1.165 7 C -0.461 4.461 8 H 0.119 0.881 9 C -0.060 4.060 10 C -0.384 4.384 11 C -0.023 4.023 12 C -0.151 4.151 13 C -0.173 4.173 14 C -0.145 4.145 15 N -0.146 5.146 16 C -0.271 4.271 17 S 0.270 5.730 18 H 0.109 0.891 19 H 0.133 0.867 20 H 0.134 0.866 21 H 0.135 0.865 22 H 0.157 0.843 Dipole moment (debyes) X Y Z Total from point charges 4.298 3.316 0.854 5.495 hybrid contribution 0.420 -4.117 -0.924 4.240 sum 4.718 -0.801 -0.070 4.786 Atomic orbital electron populations 1.70505 1.07973 1.34127 1.25935 1.27531 0.95699 1.04450 0.90413 0.84333 0.78819 0.74876 0.82934 1.15651 1.14493 1.16462 1.20399 0.94309 0.97883 1.33521 0.88129 1.21316 0.95956 0.93736 0.94972 1.19450 0.92523 1.03887 1.22576 1.18829 0.94736 0.93402 0.95340 1.20886 0.92449 0.99054 1.02698 1.21292 0.97741 0.97947 1.00348 1.22022 0.96384 0.92100 1.03956 1.66796 0.98179 1.34340 1.15333 1.23312 0.97708 0.96996 1.09094 1.84020 1.03396 1.22133 1.63494 0.89110 0.86717 0.86581 0.86495 0.84255 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.77 -18.26 13.65 55.56 0.76 -17.50 14 2 C 0.05 1.10 5.50 -17.27 -0.10 1.00 14 3 Si 0.97 20.26 24.75 -169.99 -4.21 16.05 14 4 H -0.23 -4.68 6.84 56.52 0.39 -4.30 14 5 H -0.22 -4.65 6.54 56.52 0.37 -4.28 14 6 H -0.24 -4.66 7.11 56.52 0.40 -4.26 14 7 C -0.43 -10.60 9.61 -38.23 -0.37 -10.96 14 8 H 0.10 2.49 8.06 -52.49 -0.42 2.07 14 9 C 0.06 1.47 5.70 -39.44 -0.22 1.25 14 10 C -0.36 -8.89 10.15 -39.51 -0.40 -9.29 14 11 C -0.01 -0.32 5.87 -107.07 -0.63 -0.95 14 12 C -0.12 -2.53 10.17 -38.76 -0.39 -2.92 14 13 C -0.15 -2.76 10.01 -40.01 -0.40 -3.16 14 14 C 0.02 0.43 11.18 -17.52 -0.20 0.24 14 15 N -0.44 -10.18 10.38 -11.57 -0.12 -10.30 14 16 C -0.03 -0.65 7.65 -16.06 -0.12 -0.77 14 17 S 0.02 0.37 16.94 -107.50 -1.82 -1.45 14 18 H 0.30 6.74 8.73 -40.82 -0.36 6.38 14 19 H 0.11 2.68 8.06 -52.48 -0.42 2.26 14 20 H 0.12 2.06 8.06 -52.49 -0.42 1.63 14 21 H 0.12 1.66 8.06 -52.49 -0.42 1.24 14 22 H 0.14 2.20 8.06 -52.49 -0.42 1.78 14 LS Contribution 211.06 15.07 3.18 3.18 Total: -1.00 -26.71 211.06 -6.35 -33.06 By element: Atomic # 1 Polarization: 3.83 SS G_CDS: -1.31 Total: 2.52 kcal Atomic # 6 Polarization: -22.74 SS G_CDS: -2.83 Total: -25.57 kcal Atomic # 7 Polarization: -28.44 SS G_CDS: 0.64 Total: -27.80 kcal Atomic # 14 Polarization: 20.26 SS G_CDS: -4.21 Total: 16.05 kcal Atomic # 16 Polarization: 0.37 SS G_CDS: -1.82 Total: -1.45 kcal Total LS contribution 3.18 Total: 3.18 kcal Total: -26.71 -6.35 -33.06 kcal The number of atoms in the molecule is 22 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259568488.mol2 22 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 53.910 kcal (2) G-P(sol) polarization free energy of solvation -26.714 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 27.196 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.351 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.065 kcal (6) G-S(sol) free energy of system = (1) + (5) 20.845 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.15 seconds