Wall clock time and date at job start Mon Mar 30 2020 02:01:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30746 * 1 3 3 Si 1.86793 * 120.00187 * 2 1 4 4 H 1.48498 * 109.47669 * 89.99475 * 3 2 1 5 5 H 1.48499 * 109.47509 * 210.00110 * 3 2 1 6 6 H 1.48510 * 109.47153 * 329.99918 * 3 2 1 7 7 C 1.40216 * 120.00133 * 179.97438 * 2 1 3 8 8 H 1.08000 * 119.99852 * 20.11514 * 7 2 1 9 9 C 1.39874 * 120.00588 * 200.11693 * 7 2 1 10 10 C 1.36948 * 124.81239 * 194.01945 * 9 7 2 11 11 C 1.39672 * 114.96477 * 180.02562 * 10 9 7 12 12 C 1.41998 * 128.85744 * 179.97438 * 11 10 9 13 13 C 1.36531 * 118.83320 * 179.97438 * 12 11 10 14 14 C 1.38758 * 119.70877 * 0.02562 * 13 12 11 15 15 N 1.31455 * 121.14393 * 359.97438 * 14 13 12 16 16 C 1.33306 * 122.07987 * 0.02562 * 15 14 13 17 17 S 1.75456 * 124.80390 * 13.70844 * 9 7 2 18 18 H 0.97003 * 119.99884 * 174.75791 * 1 2 3 19 19 H 1.08003 * 122.52105 * 0.02562 * 10 9 7 20 20 H 1.07997 * 120.58414 * 359.97438 * 12 11 10 21 21 H 1.07995 * 120.14557 * 179.97438 * 13 12 11 22 22 H 1.08001 * 119.42967 * 179.97438 * 14 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3075 0.0000 0.0000 3 14 2.2415 1.6176 0.0000 4 1 2.4889 2.0465 1.4000 5 1 3.5390 1.4401 -0.7000 6 1 1.4389 2.6527 -0.7001 7 6 2.0086 -1.2143 0.0005 8 1 1.5180 -2.1212 -0.3207 9 6 3.3433 -1.2512 0.4172 10 6 4.1992 -2.2994 0.2071 11 6 5.4889 -2.1176 0.7116 12 6 6.5983 -3.0024 0.6607 13 6 7.7783 -2.6121 1.2260 14 6 7.8709 -1.3688 1.8350 15 7 6.8399 -0.5545 1.8786 16 6 5.6609 -0.8758 1.3457 17 16 4.1604 0.0423 1.2762 18 1 -0.4850 -0.8366 -0.0768 19 1 3.8996 -3.1991 -0.3098 20 1 6.5103 -3.9671 0.1834 21 1 8.6355 -3.2685 1.1999 22 1 8.8064 -1.0647 2.2811 RHF calculation, no. of doubly occupied orbitals= 33 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259568488.mol2 22 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:01:22 Heat of formation + Delta-G solvation = 4.408208 kcal Electronic energy + Delta-G solvation = -10470.108978 eV Core-core repulsion = 8500.434235 eV Total energy + Delta-G solvation = -1969.674743 eV No. of doubly occupied orbitals = 33 Molecular weight (most abundant/longest-lived isotopes) = 205.026 amu Computer time = 0.15 seconds Orbital eigenvalues (eV) -40.70469 -37.15089 -35.36215 -32.93658 -31.33220 -27.32051 -24.83379 -23.46880 -21.20555 -20.88051 -18.62592 -17.17751 -17.03892 -15.93456 -15.81628 -15.16133 -14.93339 -14.44335 -13.75558 -13.66587 -13.38343 -12.78292 -12.59833 -12.29364 -11.91857 -11.45154 -11.08583 -10.91307 -10.11699 -9.82244 -9.50896 -8.73559 -6.74786 0.00386 0.41196 0.52448 1.10858 1.26103 1.42624 1.71589 1.77246 2.04226 2.70126 3.12004 3.94564 4.07824 4.32519 4.38473 4.68181 5.04492 5.09698 5.17516 5.23563 5.36592 5.60408 5.78476 5.92869 6.12086 6.31895 7.15374 7.59728 Molecular weight = 205.03amu Principal moments of inertia in cm(-1) A = 0.062258 B = 0.012082 C = 0.010430 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 449.635241 B = 2317.021640 C = 2683.860024 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.782 5.782 2 C 0.027 3.973 3 Si 0.988 3.012 4 H -0.224 1.224 5 H -0.228 1.228 6 H -0.213 1.213 7 C -0.459 4.459 8 H 0.086 0.914 9 C 0.042 3.958 10 C -0.375 4.375 11 C -0.043 4.043 12 C -0.120 4.120 13 C -0.139 4.139 14 C 0.040 3.960 15 N -0.467 5.467 16 C -0.055 4.055 17 S 0.010 5.990 18 H 0.295 0.705 19 H 0.116 0.884 20 H 0.144 0.856 21 H 0.172 0.828 22 H 0.185 0.815 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.954 -0.803 0.374 8.004 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.402 5.402 2 C -0.197 4.197 3 Si 0.804 3.196 4 H -0.149 1.149 5 H -0.152 1.152 6 H -0.136 1.136 7 C -0.493 4.493 8 H 0.104 0.896 9 C -0.076 4.076 10 C -0.400 4.400 11 C -0.053 4.053 12 C -0.147 4.147 13 C -0.160 4.160 14 C -0.128 4.128 15 N -0.178 5.178 16 C -0.297 4.297 17 S 0.265 5.735 18 H 0.107 0.893 19 H 0.134 0.866 20 H 0.162 0.838 21 H 0.190 0.810 22 H 0.202 0.798 Dipole moment (debyes) X Y Z Total from point charges 7.209 2.960 1.296 7.900 hybrid contribution -0.106 -4.173 -0.977 4.287 sum 7.102 -1.212 0.318 7.212 Atomic orbital electron populations 1.70535 1.08119 1.34069 1.27450 1.28261 0.95853 1.05917 0.89659 0.84158 0.78224 0.73656 0.83567 1.14872 1.15200 1.13621 1.20351 0.94829 0.98025 1.36133 0.89650 1.21434 0.96213 0.94500 0.95408 1.19662 0.93319 1.03978 1.23014 1.19121 0.95519 0.94334 0.96301 1.21386 0.91993 0.99490 1.01861 1.21871 0.98466 0.97933 0.97755 1.23018 0.96662 0.91829 1.01282 1.66870 0.98515 1.35867 1.16513 1.23451 0.98393 0.97464 1.10382 1.83820 1.04095 1.22119 1.63488 0.89310 0.86589 0.83821 0.81019 0.79786 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.78 -38.28 13.65 21.88 0.30 -37.98 14 2 C 0.03 1.31 5.50 85.34 0.47 1.77 14 3 Si 0.99 41.05 24.75 68.60 1.70 42.75 14 4 H -0.22 -8.96 6.84 99.48 0.68 -8.28 14 5 H -0.23 -9.64 6.54 99.48 0.65 -8.99 14 6 H -0.21 -7.89 7.11 99.48 0.71 -7.18 14 7 C -0.46 -23.84 9.61 23.15 0.22 -23.62 14 8 H 0.09 4.51 8.06 -2.91 -0.02 4.49 14 9 C 0.04 2.20 5.70 22.36 0.13 2.32 14 10 C -0.38 -18.79 10.15 22.31 0.23 -18.56 14 11 C -0.04 -2.01 5.87 -21.45 -0.13 -2.13 14 12 C -0.12 -4.45 10.17 22.80 0.23 -4.22 14 13 C -0.14 -4.24 10.01 21.99 0.22 -4.02 14 14 C 0.04 1.38 11.18 84.87 0.95 2.33 14 15 N -0.47 -20.54 10.38 -190.51 -1.98 -22.52 14 16 C -0.06 -2.67 7.65 85.02 0.65 -2.02 14 17 S 0.01 0.51 16.94 -56.49 -0.96 -0.45 14 18 H 0.29 13.96 8.73 -92.71 -0.81 13.16 14 19 H 0.12 5.55 8.06 -2.91 -0.02 5.53 14 20 H 0.14 4.46 8.06 -2.91 -0.02 4.44 14 21 H 0.17 3.46 8.06 -2.91 -0.02 3.44 14 22 H 0.19 4.56 8.06 -2.91 -0.02 4.53 14 Total: -1.00 -58.34 211.06 3.14 -55.20 By element: Atomic # 1 Polarization: 10.03 SS G_CDS: 1.11 Total: 11.14 kcal Atomic # 6 Polarization: -51.11 SS G_CDS: 2.97 Total: -48.14 kcal Atomic # 7 Polarization: -58.82 SS G_CDS: -1.68 Total: -60.50 kcal Atomic # 14 Polarization: 41.05 SS G_CDS: 1.70 Total: 42.75 kcal Atomic # 16 Polarization: 0.51 SS G_CDS: -0.96 Total: -0.45 kcal Total: -58.34 3.14 -55.20 kcal The number of atoms in the molecule is 22 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259568488.mol2 22 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 59.604 kcal (2) G-P(sol) polarization free energy of solvation -58.341 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 1.263 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.145 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -55.196 kcal (6) G-S(sol) free energy of system = (1) + (5) 4.408 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.15 seconds