Wall clock time and date at job start Mon Mar 30 2020 02:12:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30764 * 1 3 3 Si 1.86803 * 119.99883 * 2 1 4 4 H 1.48508 * 109.46742 * 269.99896 * 3 2 1 5 5 H 1.48501 * 109.47216 * 29.99753 * 3 2 1 6 6 H 1.48490 * 109.47426 * 149.99815 * 3 2 1 7 7 C 1.39956 * 120.00122 * 179.97438 * 2 1 3 8 8 H 1.08002 * 119.99689 * 179.97438 * 7 2 1 9 9 C 1.41824 * 119.99767 * 0.28046 * 7 2 1 10 10 C 1.42597 * 126.95418 * 179.43237 * 9 7 2 11 11 C 1.36692 * 103.80067 * 179.91444 * 10 9 7 12 12 C 1.47210 * 126.70055 * 180.08953 * 11 10 9 13 13 C 1.36401 * 126.80015 * 0.30551 * 12 11 10 14 14 N 1.33647 * 107.84529 * 179.97438 * 13 12 11 15 15 C 1.30662 * 109.61681 * 0.02562 * 14 13 12 16 16 N 1.34959 * 109.06494 * 359.75705 * 15 14 13 17 17 H 0.97006 * 126.46452 * 180.24973 * 16 15 14 18 18 O 1.34652 * 106.59084 * 0.33999 * 11 10 9 19 19 N 1.20868 * 111.95164 * 359.77173 * 18 11 10 20 20 H 0.97005 * 120.00083 * 0.02562 * 1 2 3 21 21 H 1.07999 * 128.09501 * 359.97438 * 10 9 7 22 22 H 1.07993 * 126.07732 * 359.97438 * 13 12 11 23 23 H 1.08003 * 125.46707 * 180.02562 * 15 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3076 0.0000 0.0000 3 14 2.2416 1.6178 0.0000 4 1 2.4891 2.0464 -1.4002 5 1 1.4390 2.6527 0.7000 6 1 3.5391 1.4403 0.7000 7 6 2.0074 -1.2120 0.0005 8 1 3.0875 -1.2120 0.0001 9 6 1.2983 -2.4403 -0.0049 10 6 1.8565 -3.7524 -0.0165 11 6 0.7627 -4.5721 -0.0154 12 6 0.7664 -6.0442 -0.0230 13 6 1.8607 -6.8585 -0.0266 14 7 1.4298 -8.1235 -0.0327 15 6 0.1233 -8.1420 -0.0337 16 7 -0.3355 -6.8728 -0.0228 17 1 -1.2652 -6.5958 -0.0175 18 8 -0.3189 -3.7700 -0.0118 19 7 -0.0140 -2.6004 -0.0061 20 1 -0.4850 0.8401 -0.0004 21 1 2.8994 -4.0328 -0.0233 22 1 2.8919 -6.5379 -0.0247 23 1 -0.4909 -9.0303 -0.0379 RHF calculation, no. of doubly occupied orbitals= 36 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259576442.mol2 23 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:12:47 Heat of formation + Delta-G solvation = 104.094365 kcal Electronic energy + Delta-G solvation = -12316.391765 eV Core-core repulsion = 9940.579619 eV Total energy + Delta-G solvation = -2375.812147 eV No. of doubly occupied orbitals = 36 Molecular weight (most abundant/longest-lived isotopes) = 205.059 amu Computer time = 0.14 seconds Orbital eigenvalues (eV) -42.77620 -41.57035 -34.04486 -32.44750 -32.07907 -30.84061 -27.72437 -26.20887 -22.35107 -21.81291 -20.48438 -20.15641 -18.60315 -16.26735 -15.83955 -15.60055 -14.69525 -14.57372 -14.04496 -13.74761 -13.14044 -12.65988 -12.06149 -11.29218 -11.13579 -10.80911 -10.17391 -10.04896 -9.95514 -9.73321 -9.23970 -9.12437 -8.37077 -7.27136 -6.58018 -4.54769 1.74840 3.02330 3.10140 3.12260 3.16121 3.27360 3.64586 4.00756 4.02634 4.33137 4.85106 5.33192 5.35026 5.71428 5.92366 6.08709 6.46593 6.67153 6.86563 6.95382 7.14364 7.32023 7.54439 8.19787 8.27945 8.53520 8.88850 10.31543 10.43835 Molecular weight = 205.06amu Principal moments of inertia in cm(-1) A = 0.098124 B = 0.007396 C = 0.006894 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 285.283526 B = 3784.829603 C = 4060.264641 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.776 5.776 2 C 0.069 3.931 3 Si 0.915 3.085 4 H -0.270 1.270 5 H -0.278 1.278 6 H -0.262 1.262 7 C -0.449 4.449 8 H 0.087 0.913 9 C 0.165 3.835 10 C -0.239 4.239 11 C -0.029 4.029 12 C 0.080 3.920 13 C -0.007 4.007 14 N -0.494 5.494 15 C 0.176 3.824 16 N -0.564 5.564 17 H 0.424 0.576 18 O 0.045 5.955 19 N -0.397 5.397 20 H 0.276 0.724 21 H 0.147 0.853 22 H 0.174 0.826 23 H 0.208 0.792 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.168 -8.260 -0.043 8.262 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.404 5.404 2 C -0.151 4.151 3 Si 0.740 3.260 4 H -0.196 1.196 5 H -0.203 1.203 6 H -0.186 1.186 7 C -0.487 4.487 8 H 0.105 0.895 9 C 0.021 3.979 10 C -0.263 4.263 11 C -0.095 4.095 12 C -0.036 4.036 13 C -0.157 4.157 14 N -0.213 5.213 15 C -0.106 4.106 16 N -0.168 5.168 17 H 0.262 0.738 18 O -0.007 6.007 19 N -0.122 5.122 20 H 0.086 0.914 21 H 0.165 0.835 22 H 0.191 0.809 23 H 0.224 0.776 Dipole moment (debyes) X Y Z Total from point charges -0.896 -8.126 -0.036 8.175 hybrid contribution 0.158 1.294 -0.007 1.304 sum -0.738 -6.832 -0.043 6.872 Atomic orbital electron populations 1.69864 1.07161 1.28460 1.34915 1.25860 0.94907 1.01032 0.93279 0.86200 0.80145 0.80637 0.79021 1.19576 1.20345 1.18639 1.18706 0.93915 0.87674 1.48397 0.89525 1.20384 0.88063 0.93160 0.96280 1.22450 0.98110 0.92677 1.13014 1.21055 0.89917 0.88227 1.10261 1.18674 0.87439 0.87219 1.10305 1.22263 0.98191 0.87390 1.07866 1.70107 1.09121 1.22403 1.19704 1.24850 0.92001 0.87280 1.06499 1.43359 1.09677 1.07275 1.56474 0.73793 1.84895 1.31977 1.13129 1.70748 1.74812 1.15797 0.90466 1.31107 0.91352 0.83526 0.80864 0.77582 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.78 -21.89 12.01 55.55 0.67 -21.22 14 2 C 0.07 1.84 5.50 -17.36 -0.10 1.74 14 3 Si 0.92 19.40 29.56 -169.99 -5.02 14.38 14 4 H -0.27 -5.63 7.11 56.52 0.40 -5.23 14 5 H -0.28 -5.79 7.11 56.52 0.40 -5.39 14 6 H -0.26 -5.40 7.11 56.52 0.40 -4.99 14 7 C -0.45 -12.32 9.45 -37.57 -0.36 -12.68 14 8 H 0.09 2.19 7.85 -52.49 -0.41 1.78 14 9 C 0.17 4.57 6.81 -84.66 -0.58 3.99 14 10 C -0.24 -5.58 10.90 -38.46 -0.42 -6.00 14 11 C -0.03 -0.64 7.38 -36.50 -0.27 -0.91 14 12 C 0.08 1.45 7.18 -82.17 -0.59 0.86 14 13 C -0.01 -0.13 11.64 -17.42 -0.20 -0.33 14 14 N -0.49 -7.95 11.21 -14.35 -0.16 -8.11 14 15 C 0.18 2.27 13.02 -90.32 -1.18 1.10 14 16 N -0.56 -8.00 6.20 -10.72 -0.07 -8.07 14 17 H 0.42 4.92 8.96 -40.82 -0.37 4.55 14 18 O 0.04 1.12 11.20 15.53 0.17 1.29 14 19 N -0.40 -11.33 10.42 32.32 0.34 -11.00 14 20 H 0.28 7.09 8.29 -40.82 -0.34 6.75 14 21 H 0.15 2.95 8.06 -52.49 -0.42 2.52 14 22 H 0.17 2.64 8.06 -52.49 -0.42 2.22 14 23 H 0.21 1.62 8.06 -52.48 -0.42 1.19 14 LS Contribution 223.08 15.07 3.36 3.36 Total: -1.00 -32.61 223.08 -5.58 -38.19 By element: Atomic # 1 Polarization: 4.58 SS G_CDS: -1.18 Total: 3.40 kcal Atomic # 6 Polarization: -8.55 SS G_CDS: -3.68 Total: -12.23 kcal Atomic # 7 Polarization: -49.17 SS G_CDS: 0.78 Total: -48.40 kcal Atomic # 8 Polarization: 1.12 SS G_CDS: 0.17 Total: 1.29 kcal Atomic # 14 Polarization: 19.40 SS G_CDS: -5.02 Total: 14.38 kcal Total LS contribution 3.36 Total: 3.36 kcal Total: -32.61 -5.58 -38.19 kcal The number of atoms in the molecule is 23 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259576442.mol2 23 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 142.286 kcal (2) G-P(sol) polarization free energy of solvation -32.614 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 109.672 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.577 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.192 kcal (6) G-S(sol) free energy of system = (1) + (5) 104.094 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.14 seconds