Wall clock time and date at job start Mon Mar 30 2020 02:12:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30764 * 1 3 3 Si 1.86803 * 119.99883 * 2 1 4 4 H 1.48508 * 109.46742 * 269.99896 * 3 2 1 5 5 H 1.48501 * 109.47216 * 29.99753 * 3 2 1 6 6 H 1.48490 * 109.47426 * 149.99815 * 3 2 1 7 7 C 1.39956 * 120.00122 * 179.97438 * 2 1 3 8 8 H 1.08002 * 119.99689 * 179.97438 * 7 2 1 9 9 C 1.41824 * 119.99767 * 0.28046 * 7 2 1 10 10 C 1.42597 * 126.95418 * 179.43237 * 9 7 2 11 11 C 1.36692 * 103.80067 * 179.91444 * 10 9 7 12 12 C 1.47210 * 126.70055 * 180.08953 * 11 10 9 13 13 C 1.36401 * 126.80015 * 0.30551 * 12 11 10 14 14 N 1.33647 * 107.84529 * 179.97438 * 13 12 11 15 15 C 1.30662 * 109.61681 * 0.02562 * 14 13 12 16 16 N 1.34959 * 109.06494 * 359.75705 * 15 14 13 17 17 H 0.97006 * 126.46452 * 180.24973 * 16 15 14 18 18 O 1.34652 * 106.59084 * 0.33999 * 11 10 9 19 19 N 1.20868 * 111.95164 * 359.77173 * 18 11 10 20 20 H 0.97005 * 120.00083 * 0.02562 * 1 2 3 21 21 H 1.07999 * 128.09501 * 359.97438 * 10 9 7 22 22 H 1.07993 * 126.07732 * 359.97438 * 13 12 11 23 23 H 1.08003 * 125.46707 * 180.02562 * 15 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3076 0.0000 0.0000 3 14 2.2416 1.6178 0.0000 4 1 2.4891 2.0464 -1.4002 5 1 1.4390 2.6527 0.7000 6 1 3.5391 1.4403 0.7000 7 6 2.0074 -1.2120 0.0005 8 1 3.0875 -1.2120 0.0001 9 6 1.2983 -2.4403 -0.0049 10 6 1.8565 -3.7524 -0.0165 11 6 0.7627 -4.5721 -0.0154 12 6 0.7664 -6.0442 -0.0230 13 6 1.8607 -6.8585 -0.0266 14 7 1.4298 -8.1235 -0.0327 15 6 0.1233 -8.1420 -0.0337 16 7 -0.3355 -6.8728 -0.0228 17 1 -1.2652 -6.5958 -0.0175 18 8 -0.3189 -3.7700 -0.0118 19 7 -0.0140 -2.6004 -0.0061 20 1 -0.4850 0.8401 -0.0004 21 1 2.8994 -4.0328 -0.0233 22 1 2.8919 -6.5379 -0.0247 23 1 -0.4909 -9.0303 -0.0379 RHF calculation, no. of doubly occupied orbitals= 36 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259576442.mol2 23 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:12:47 Heat of formation + Delta-G solvation = 81.965119 kcal Electronic energy + Delta-G solvation = -12317.351362 eV Core-core repulsion = 9940.579619 eV Total energy + Delta-G solvation = -2376.771743 eV No. of doubly occupied orbitals = 36 Molecular weight (most abundant/longest-lived isotopes) = 205.059 amu Computer time = 0.15 seconds Orbital eigenvalues (eV) -44.70161 -42.81911 -36.01436 -33.96808 -33.63296 -32.58909 -29.25308 -28.22510 -23.87290 -23.48892 -22.04112 -21.64325 -20.11274 -18.09919 -17.76165 -17.28576 -16.47255 -15.84375 -15.49775 -15.22274 -14.53968 -14.26476 -13.83873 -13.02796 -12.91595 -12.78521 -11.90801 -11.62085 -11.44148 -11.23984 -10.95570 -10.74765 -10.33305 -8.85067 -8.54501 -6.62212 0.28440 1.33987 1.39443 1.55424 1.72937 2.07016 2.09810 2.23781 2.25188 2.70975 3.30969 3.79235 4.08055 4.33785 4.52855 4.57736 4.78588 4.91338 5.18829 5.35173 5.38440 5.60993 6.24402 6.47227 6.55046 6.86056 6.99340 8.40101 8.51434 Molecular weight = 205.06amu Principal moments of inertia in cm(-1) A = 0.098124 B = 0.007396 C = 0.006894 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 285.283526 B = 3784.829603 C = 4060.264641 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.821 5.821 2 C 0.017 3.983 3 Si 0.999 3.001 4 H -0.262 1.262 5 H -0.272 1.272 6 H -0.250 1.250 7 C -0.482 4.482 8 H 0.098 0.902 9 C 0.132 3.868 10 C -0.260 4.260 11 C -0.003 4.003 12 C 0.033 3.967 13 C 0.009 3.991 14 N -0.525 5.525 15 C 0.217 3.783 16 N -0.557 5.557 17 H 0.435 0.565 18 O 0.034 5.966 19 N -0.442 5.442 20 H 0.281 0.719 21 H 0.174 0.826 22 H 0.184 0.816 23 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.389 -9.616 -0.049 9.624 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.450 5.450 2 C -0.199 4.199 3 Si 0.819 3.181 4 H -0.187 1.187 5 H -0.197 1.197 6 H -0.174 1.174 7 C -0.520 4.520 8 H 0.116 0.884 9 C -0.013 4.013 10 C -0.283 4.283 11 C -0.068 4.068 12 C -0.083 4.083 13 C -0.141 4.141 14 N -0.245 5.245 15 C -0.067 4.067 16 N -0.161 5.161 17 H 0.276 0.724 18 O -0.016 6.016 19 N -0.169 5.169 20 H 0.091 0.909 21 H 0.191 0.809 22 H 0.201 0.799 23 H 0.279 0.721 Dipole moment (debyes) X Y Z Total from point charges -0.357 -9.509 -0.042 9.515 hybrid contribution -0.071 1.400 -0.008 1.402 sum -0.428 -8.108 -0.050 8.120 Atomic orbital electron populations 1.69999 1.09182 1.29780 1.36088 1.26982 0.95761 1.05106 0.92005 0.84950 0.78790 0.74955 0.79402 1.18704 1.19708 1.17351 1.19201 0.94746 0.88596 1.49424 0.88378 1.20946 0.88538 0.95104 0.96669 1.22683 0.99796 0.91295 1.14546 1.21508 0.88582 0.89990 1.06732 1.18383 0.89376 0.85498 1.15006 1.22566 0.98547 0.87735 1.05290 1.70210 1.10845 1.21574 1.21843 1.26018 0.91611 0.87954 1.01089 1.43398 1.09651 1.07259 1.55840 0.72403 1.84790 1.32893 1.12707 1.71248 1.74779 1.16767 0.92100 1.33302 0.90927 0.80894 0.79889 0.72112 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.82 -47.81 12.01 21.82 0.26 -47.55 14 2 C 0.02 0.91 5.50 85.27 0.47 1.38 14 3 Si 1.00 40.07 29.56 68.60 2.03 42.10 14 4 H -0.26 -10.09 7.11 99.48 0.71 -9.38 14 5 H -0.27 -10.53 7.11 99.48 0.71 -9.82 14 6 H -0.25 -9.42 7.11 99.48 0.71 -8.72 14 7 C -0.48 -27.14 9.45 23.57 0.22 -26.92 14 8 H 0.10 5.04 7.85 -2.91 -0.02 5.02 14 9 C 0.13 7.55 6.81 41.06 0.28 7.83 14 10 C -0.26 -12.38 10.90 23.00 0.25 -12.13 14 11 C 0.00 -0.13 7.38 24.27 0.18 0.05 14 12 C 0.03 1.16 7.18 40.12 0.29 1.45 14 13 C 0.01 0.29 11.64 83.99 0.98 1.26 14 14 N -0.53 -15.13 11.21 -199.32 -2.23 -17.36 14 15 C 0.22 4.62 13.02 180.24 2.35 6.97 14 16 N -0.56 -14.28 6.20 -187.82 -1.16 -15.45 14 17 H 0.44 9.04 8.96 -92.70 -0.83 8.21 14 18 O 0.03 1.75 11.20 65.75 0.74 2.48 14 19 N -0.44 -26.28 10.42 -51.91 -0.54 -26.82 14 20 H 0.28 14.85 8.29 -92.70 -0.77 14.08 14 21 H 0.17 6.95 8.06 -2.91 -0.02 6.92 14 22 H 0.18 5.26 8.06 -2.91 -0.02 5.23 14 23 H 0.26 2.40 8.06 -2.91 -0.02 2.38 14 Total: -1.00 -73.30 223.08 4.53 -68.78 By element: Atomic # 1 Polarization: 13.50 SS G_CDS: 0.43 Total: 13.93 kcal Atomic # 6 Polarization: -25.12 SS G_CDS: 5.01 Total: -20.11 kcal Atomic # 7 Polarization: -103.50 SS G_CDS: -3.68 Total: -107.18 kcal Atomic # 8 Polarization: 1.75 SS G_CDS: 0.74 Total: 2.48 kcal Atomic # 14 Polarization: 40.07 SS G_CDS: 2.03 Total: 42.10 kcal Total: -73.30 4.53 -68.78 kcal The number of atoms in the molecule is 23 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259576442.mol2 23 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 150.742 kcal (2) G-P(sol) polarization free energy of solvation -73.304 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 77.438 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.527 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.777 kcal (6) G-S(sol) free energy of system = (1) + (5) 81.965 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.15 seconds