Wall clock time and date at job start Mon Mar 30 2020 02:13:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30826 * 1 3 3 Si 1.86802 * 119.99757 * 2 1 4 4 H 1.48496 * 109.47125 * 274.30870 * 3 2 1 5 5 H 1.48500 * 109.47201 * 34.31460 * 3 2 1 6 6 H 1.48509 * 109.46928 * 154.31041 * 3 2 1 7 7 C 1.40133 * 119.99909 * 179.97438 * 2 1 3 8 8 H 1.08004 * 119.99603 * 190.23035 * 7 2 1 9 9 C 1.39933 * 120.00310 * 10.23458 * 7 2 1 10 10 C 1.39614 * 127.06056 * 6.64833 * 9 7 2 11 11 N 1.32994 * 107.66122 * 180.02562 * 10 9 7 12 12 C 1.31008 * 110.12576 * 359.97438 * 11 10 9 13 13 N 1.35971 * 109.49739 * 0.02562 * 12 11 10 14 14 C 1.38939 * 126.58044 * 179.97438 * 13 12 11 15 15 N 1.30918 * 125.68999 * 0.02562 * 14 13 12 16 16 C 1.34534 * 108.63672 * 180.02562 * 15 14 13 17 17 C 1.34260 * 107.77534 * 0.02562 * 16 15 14 18 18 O 1.34192 * 125.69496 * 179.72006 * 14 13 12 19 19 H 0.97003 * 119.99828 * 0.02562 * 1 2 3 20 20 H 1.08003 * 126.17083 * 0.05093 * 10 9 7 21 21 H 1.07990 * 125.25188 * 179.73488 * 12 11 10 22 22 H 1.07997 * 126.11565 * 179.97438 * 16 15 14 23 23 H 1.07994 * 126.38528 * 179.97438 * 17 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3083 0.0000 0.0000 3 14 2.2422 1.6178 0.0000 4 1 2.3986 2.0991 -1.3961 5 1 1.4882 2.6247 0.7893 6 1 3.5824 1.4156 0.6070 7 6 2.0089 -1.2136 0.0005 8 1 3.0761 -1.2209 0.1667 9 6 1.3260 -2.4159 -0.2142 10 6 -0.0156 -2.5698 -0.5689 11 7 -0.2588 -3.8733 -0.6715 12 6 0.8277 -4.5567 -0.4090 13 7 1.8431 -3.7005 -0.1182 14 6 3.1480 -4.0452 0.2120 15 7 3.6176 -5.2643 0.2973 16 6 4.9172 -5.2014 0.6392 17 6 5.2456 -3.9057 0.7655 18 8 4.1386 -3.1840 0.4910 19 1 -0.4850 0.8401 -0.0004 20 1 -0.7274 -1.7739 -0.7311 21 1 0.9038 -5.6338 -0.4174 22 1 5.5781 -6.0427 0.7866 23 1 6.2160 -3.5138 1.0319 RHF calculation, no. of doubly occupied orbitals= 36 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259582969.mol2 23 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:13:14 Heat of formation + Delta-G solvation = 87.285852 kcal Electronic energy + Delta-G solvation = -12747.167762 eV Core-core repulsion = 10370.626744 eV Total energy + Delta-G solvation = -2376.541018 eV No. of doubly occupied orbitals = 36 Molecular weight (most abundant/longest-lived isotopes) = 205.059 amu Computer time = 0.16 seconds Orbital eigenvalues (eV) -42.80363 -40.12528 -34.38940 -33.86179 -32.76674 -29.17043 -28.18566 -25.00137 -22.67240 -22.26641 -19.98548 -19.38845 -18.40256 -16.35959 -16.33068 -15.93089 -14.87933 -14.43689 -13.53579 -13.09593 -12.94650 -12.70830 -12.16103 -11.48666 -11.21348 -10.99157 -10.95257 -10.46410 -10.10692 -9.67409 -9.59576 -8.58500 -7.86523 -7.25224 -6.96922 -4.49374 1.76618 2.60171 2.73703 2.96423 3.00085 3.01650 3.73060 3.77260 3.97236 4.53591 5.12006 5.17756 5.34460 5.67349 6.16455 6.23668 6.43457 6.73766 6.90570 7.12973 7.33944 7.64687 8.17527 8.29782 8.54369 8.65373 8.72889 9.61695 9.99718 Molecular weight = 205.06amu Principal moments of inertia in cm(-1) A = 0.032558 B = 0.013685 C = 0.009709 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 859.793482 B = 2045.581142 C = 2883.099596 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.777 5.777 2 C 0.073 3.927 3 Si 0.931 3.069 4 H -0.266 1.266 5 H -0.273 1.273 6 H -0.261 1.261 7 C -0.425 4.425 8 H 0.087 0.913 9 C 0.184 3.816 10 C -0.143 4.143 11 N -0.447 5.447 12 C 0.067 3.933 13 N -0.409 5.409 14 C 0.460 3.540 15 N -0.521 5.521 16 C -0.022 4.022 17 C -0.112 4.112 18 O -0.198 6.198 19 H 0.286 0.714 20 H 0.187 0.813 21 H 0.184 0.816 22 H 0.183 0.817 23 H 0.212 0.788 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.413 -0.666 1.456 8.564 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.402 5.402 2 C -0.148 4.148 3 Si 0.754 3.246 4 H -0.191 1.191 5 H -0.198 1.198 6 H -0.185 1.185 7 C -0.458 4.458 8 H 0.105 0.895 9 C 0.078 3.922 10 C -0.290 4.290 11 N -0.163 5.163 12 C -0.202 4.202 13 N -0.109 5.109 14 C 0.163 3.837 15 N -0.258 5.258 16 C -0.161 4.161 17 C -0.184 4.184 18 O -0.083 6.083 19 H 0.098 0.902 20 H 0.203 0.797 21 H 0.201 0.799 22 H 0.200 0.800 23 H 0.229 0.771 Dipole moment (debyes) X Y Z Total from point charges 7.035 -1.360 1.135 7.255 hybrid contribution 1.799 1.557 0.441 2.420 sum 8.834 0.197 1.576 8.976 Atomic orbital electron populations 1.69676 1.07583 1.29704 1.33277 1.25819 0.94963 1.01300 0.92681 0.85917 0.80069 0.79196 0.79381 1.19062 1.19785 1.18465 1.18754 0.95954 0.88621 1.42443 0.89521 1.19318 0.93830 0.81117 0.97903 1.22988 0.95069 0.91244 1.19722 1.69509 1.24793 1.06878 1.15123 1.24121 0.81811 0.95795 1.18515 1.42059 1.01762 1.09808 1.57313 1.21445 0.84205 0.82057 0.95946 1.70712 1.10362 1.19187 1.25520 1.23110 0.92173 0.97031 1.03788 1.24703 0.90870 0.91471 1.11373 1.84593 1.17960 1.38011 1.67713 0.90232 0.79673 0.79873 0.80035 0.77105 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.78 -19.41 10.56 55.56 0.59 -18.82 14 2 C 0.07 1.77 5.46 -17.27 -0.09 1.68 14 3 Si 0.93 18.08 29.57 -169.99 -5.03 13.06 14 4 H -0.27 -5.08 7.11 56.52 0.40 -4.68 14 5 H -0.27 -5.12 7.11 56.52 0.40 -4.72 14 6 H -0.26 -5.02 7.11 56.52 0.40 -4.62 14 7 C -0.42 -11.20 8.96 -38.24 -0.34 -11.54 14 8 H 0.09 2.22 6.18 -52.48 -0.32 1.89 14 9 C 0.18 5.09 6.68 -83.56 -0.56 4.53 14 10 C -0.14 -4.02 10.84 -16.53 -0.18 -4.20 14 11 N -0.45 -12.10 11.16 -13.39 -0.15 -12.25 14 12 C 0.07 1.69 12.38 -89.10 -1.10 0.59 14 13 N -0.41 -10.57 3.00 -62.96 -0.19 -10.75 14 14 C 0.46 10.66 8.71 -86.35 -0.75 9.91 14 15 N -0.52 -10.80 11.17 -14.29 -0.16 -10.96 14 16 C -0.02 -0.35 11.88 -17.77 -0.21 -0.56 14 17 C -0.11 -1.75 12.17 29.33 0.36 -1.39 14 18 O -0.20 -4.20 8.81 4.15 0.04 -4.16 14 19 H 0.29 6.37 8.30 -40.82 -0.34 6.04 14 20 H 0.19 5.24 6.01 -52.48 -0.32 4.93 14 21 H 0.18 4.05 8.06 -52.49 -0.42 3.62 14 22 H 0.18 2.06 8.06 -52.49 -0.42 1.64 14 23 H 0.21 2.17 8.06 -52.49 -0.42 1.74 14 LS Contribution 217.33 15.07 3.28 3.28 Total: -1.00 -30.21 217.33 -5.55 -35.76 By element: Atomic # 1 Polarization: 6.88 SS G_CDS: -1.04 Total: 5.84 kcal Atomic # 6 Polarization: 1.88 SS G_CDS: -2.88 Total: -1.00 kcal Atomic # 7 Polarization: -52.87 SS G_CDS: 0.09 Total: -52.78 kcal Atomic # 8 Polarization: -4.20 SS G_CDS: 0.04 Total: -4.16 kcal Atomic # 14 Polarization: 18.08 SS G_CDS: -5.03 Total: 13.06 kcal Total LS contribution 3.28 Total: 3.28 kcal Total: -30.21 -5.55 -35.76 kcal The number of atoms in the molecule is 23 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259582969.mol2 23 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 123.050 kcal (2) G-P(sol) polarization free energy of solvation -30.212 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 92.838 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.552 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.764 kcal (6) G-S(sol) free energy of system = (1) + (5) 87.286 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.16 seconds