Wall clock time and date at job start Mon Mar 30 2020 02:13:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30826 * 1 3 3 Si 1.86802 * 119.99757 * 2 1 4 4 H 1.48496 * 109.47125 * 274.30870 * 3 2 1 5 5 H 1.48500 * 109.47201 * 34.31460 * 3 2 1 6 6 H 1.48509 * 109.46928 * 154.31041 * 3 2 1 7 7 C 1.40133 * 119.99909 * 179.97438 * 2 1 3 8 8 H 1.08004 * 119.99603 * 190.23035 * 7 2 1 9 9 C 1.39933 * 120.00310 * 10.23458 * 7 2 1 10 10 C 1.39614 * 127.06056 * 6.64833 * 9 7 2 11 11 N 1.32994 * 107.66122 * 180.02562 * 10 9 7 12 12 C 1.31008 * 110.12576 * 359.97438 * 11 10 9 13 13 N 1.35971 * 109.49739 * 0.02562 * 12 11 10 14 14 C 1.38939 * 126.58044 * 179.97438 * 13 12 11 15 15 N 1.30918 * 125.68999 * 0.02562 * 14 13 12 16 16 C 1.34534 * 108.63672 * 180.02562 * 15 14 13 17 17 C 1.34260 * 107.77534 * 0.02562 * 16 15 14 18 18 O 1.34192 * 125.69496 * 179.72006 * 14 13 12 19 19 H 0.97003 * 119.99828 * 0.02562 * 1 2 3 20 20 H 1.08003 * 126.17083 * 0.05093 * 10 9 7 21 21 H 1.07990 * 125.25188 * 179.73488 * 12 11 10 22 22 H 1.07997 * 126.11565 * 179.97438 * 16 15 14 23 23 H 1.07994 * 126.38528 * 179.97438 * 17 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3083 0.0000 0.0000 3 14 2.2422 1.6178 0.0000 4 1 2.3986 2.0991 -1.3961 5 1 1.4882 2.6247 0.7893 6 1 3.5824 1.4156 0.6070 7 6 2.0089 -1.2136 0.0005 8 1 3.0761 -1.2209 0.1667 9 6 1.3260 -2.4159 -0.2142 10 6 -0.0156 -2.5698 -0.5689 11 7 -0.2588 -3.8733 -0.6715 12 6 0.8277 -4.5567 -0.4090 13 7 1.8431 -3.7005 -0.1182 14 6 3.1480 -4.0452 0.2120 15 7 3.6176 -5.2643 0.2973 16 6 4.9172 -5.2014 0.6392 17 6 5.2456 -3.9057 0.7655 18 8 4.1386 -3.1840 0.4910 19 1 -0.4850 0.8401 -0.0004 20 1 -0.7274 -1.7739 -0.7311 21 1 0.9038 -5.6338 -0.4174 22 1 5.5781 -6.0427 0.7866 23 1 6.2160 -3.5138 1.0319 RHF calculation, no. of doubly occupied orbitals= 36 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259582969.mol2 23 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:13:14 Heat of formation + Delta-G solvation = 66.623444 kcal Electronic energy + Delta-G solvation = -12748.063752 eV Core-core repulsion = 10370.626744 eV Total energy + Delta-G solvation = -2377.437008 eV No. of doubly occupied orbitals = 36 Molecular weight (most abundant/longest-lived isotopes) = 205.059 amu Computer time = 0.16 seconds Orbital eigenvalues (eV) -44.32707 -42.05261 -36.03966 -35.64120 -34.57951 -31.02460 -29.78159 -26.96509 -24.38516 -23.76073 -21.80603 -21.24082 -20.18125 -18.14188 -17.94610 -17.48112 -16.57307 -15.84890 -15.43232 -14.92149 -14.71135 -14.09008 -14.03939 -13.17350 -13.02490 -12.79917 -12.53467 -12.01528 -11.65459 -11.44284 -11.35899 -10.61941 -9.58133 -9.11234 -8.78676 -6.48382 0.18398 1.00263 1.20398 1.38253 1.53300 1.54931 2.02148 2.14077 2.44619 2.55557 3.14434 3.72442 4.05739 4.21362 4.43439 4.82351 4.88696 5.00039 5.13230 5.39356 5.42703 5.64559 6.26850 6.55926 6.60590 6.76318 6.84281 7.60665 8.21277 Molecular weight = 205.06amu Principal moments of inertia in cm(-1) A = 0.032558 B = 0.013685 C = 0.009709 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 859.793482 B = 2045.581142 C = 2883.099596 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.806 5.806 2 C 0.032 3.968 3 Si 1.008 2.992 4 H -0.259 1.259 5 H -0.260 1.260 6 H -0.256 1.256 7 C -0.454 4.454 8 H 0.089 0.911 9 C 0.165 3.835 10 C -0.179 4.179 11 N -0.472 5.472 12 C 0.077 3.923 13 N -0.422 5.422 14 C 0.411 3.589 15 N -0.521 5.521 16 C -0.032 4.032 17 C -0.087 4.087 18 O -0.218 6.218 19 H 0.297 0.703 20 H 0.174 0.826 21 H 0.211 0.789 22 H 0.231 0.769 23 H 0.269 0.731 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.214 -0.380 2.077 11.412 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.431 5.431 2 C -0.186 4.186 3 Si 0.827 3.173 4 H -0.183 1.183 5 H -0.184 1.184 6 H -0.179 1.179 7 C -0.486 4.486 8 H 0.107 0.893 9 C 0.058 3.942 10 C -0.325 4.325 11 N -0.188 5.188 12 C -0.194 4.194 13 N -0.122 5.122 14 C 0.116 3.884 15 N -0.259 5.259 16 C -0.171 4.171 17 C -0.157 4.157 18 O -0.103 6.103 19 H 0.109 0.891 20 H 0.191 0.809 21 H 0.227 0.773 22 H 0.248 0.752 23 H 0.284 0.716 Dipole moment (debyes) X Y Z Total from point charges 9.845 -1.092 1.763 10.061 hybrid contribution 1.109 1.310 0.304 1.743 sum 10.953 0.218 2.068 11.149 Atomic orbital electron populations 1.69727 1.09169 1.31397 1.32851 1.26910 0.95796 1.04544 0.91307 0.84800 0.78659 0.74111 0.79764 1.18304 1.18379 1.17907 1.19059 0.96257 0.89255 1.44056 0.89302 1.19624 0.93991 0.82423 0.98118 1.22875 0.95762 0.91561 1.22257 1.69440 1.26082 1.06671 1.16635 1.24607 0.81545 0.96767 1.16443 1.41971 1.03341 1.09066 1.57791 1.21416 0.84054 0.83047 0.99872 1.70686 1.12801 1.18276 1.24137 1.23944 0.90743 0.98998 1.03385 1.25972 0.90857 0.91353 1.07483 1.84585 1.19023 1.39181 1.67512 0.89118 0.80941 0.77288 0.75235 0.71572 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.81 -41.20 10.56 21.87 0.23 -40.97 14 2 C 0.03 1.58 5.46 85.30 0.47 2.04 14 3 Si 1.01 36.37 29.57 68.60 2.03 38.40 14 4 H -0.26 -8.99 7.11 99.48 0.71 -8.28 14 5 H -0.26 -8.74 7.11 99.48 0.71 -8.03 14 6 H -0.26 -8.91 7.11 99.48 0.71 -8.20 14 7 C -0.45 -24.43 8.96 23.14 0.21 -24.22 14 8 H 0.09 4.59 6.18 -2.91 -0.02 4.57 14 9 C 0.17 9.47 6.68 38.78 0.26 9.72 14 10 C -0.18 -10.53 10.84 84.85 0.92 -9.61 14 11 N -0.47 -26.48 11.16 -196.27 -2.19 -28.67 14 12 C 0.08 3.98 12.38 179.82 2.23 6.21 14 13 N -0.42 -22.28 3.00 -463.13 -1.39 -23.67 14 14 C 0.41 18.87 8.71 178.86 1.56 20.43 14 15 N -0.52 -20.63 11.17 -313.47 -3.50 -24.13 14 16 C -0.03 -0.91 11.88 83.37 0.99 0.08 14 17 C -0.09 -2.35 12.17 66.91 0.81 -1.54 14 18 O -0.22 -8.92 8.81 -8.05 -0.07 -8.99 14 19 H 0.30 13.40 8.30 -92.71 -0.77 12.63 14 20 H 0.17 10.37 6.01 -2.91 -0.02 10.35 14 21 H 0.21 9.23 8.06 -2.92 -0.02 9.21 14 22 H 0.23 3.92 8.06 -2.91 -0.02 3.89 14 23 H 0.27 3.79 8.06 -2.91 -0.02 3.76 14 Total: -1.00 -68.80 217.33 3.79 -65.01 By element: Atomic # 1 Polarization: 18.65 SS G_CDS: 1.25 Total: 19.90 kcal Atomic # 6 Polarization: -4.32 SS G_CDS: 7.44 Total: 3.12 kcal Atomic # 7 Polarization: -110.59 SS G_CDS: -6.85 Total: -117.44 kcal Atomic # 8 Polarization: -8.92 SS G_CDS: -0.07 Total: -8.99 kcal Atomic # 14 Polarization: 36.37 SS G_CDS: 2.03 Total: 38.40 kcal Total: -68.80 3.79 -65.01 kcal The number of atoms in the molecule is 23 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259582969.mol2 23 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 131.633 kcal (2) G-P(sol) polarization free energy of solvation -68.803 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 62.831 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.793 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.010 kcal (6) G-S(sol) free energy of system = (1) + (5) 66.623 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.16 seconds