Wall clock time and date at job start Mon Mar 30 2020 02:12:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30754 * 1 3 3 Si 1.86803 * 120.00327 * 2 1 4 4 H 1.48508 * 109.46742 * 269.99898 * 3 2 1 5 5 H 1.48494 * 109.46953 * 29.99852 * 3 2 1 6 6 H 1.48499 * 109.47135 * 150.00097 * 3 2 1 7 7 C 1.39978 * 119.99610 * 179.97438 * 2 1 3 8 8 H 1.08002 * 119.99622 * 179.97438 * 7 2 1 9 9 C 1.41802 * 119.99792 * 0.28030 * 7 2 1 10 10 C 1.47125 * 127.36972 * 179.43144 * 9 7 2 11 11 C 1.36659 * 103.15494 * 179.85490 * 10 9 7 12 12 C 1.47342 * 126.60511 * 180.15886 * 11 10 9 13 13 N 1.31622 * 125.86007 * 0.02562 * 12 11 10 14 14 C 1.33602 * 109.24612 * 179.86948 * 13 12 11 15 15 C 1.35036 * 108.41853 * 0.39834 * 14 13 12 16 16 N 1.36601 * 125.85754 * 180.31698 * 12 11 10 17 17 H 0.96993 * 126.50474 * 359.95424 * 16 12 11 18 18 O 1.34561 * 106.78980 * 0.40048 * 11 10 9 19 19 N 1.20723 * 113.07526 * 359.72237 * 18 11 10 20 20 H 0.97005 * 119.99639 * 0.02562 * 1 2 3 21 21 H 1.08002 * 128.41894 * 359.97438 * 10 9 7 22 22 H 1.07996 * 125.79175 * 180.13572 * 14 13 12 23 23 H 1.07998 * 126.46913 * 179.78028 * 15 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3075 0.0000 0.0000 3 14 2.2416 1.6177 0.0000 4 1 2.4892 2.0463 -1.4002 5 1 1.4391 2.6526 0.7000 6 1 3.5392 1.4401 0.7000 7 6 2.0074 -1.2123 0.0005 8 1 3.0874 -1.2123 0.0001 9 6 1.2982 -2.4403 -0.0049 10 6 1.8642 -3.7982 -0.0168 11 6 0.7555 -4.5973 -0.0142 12 6 0.7343 -6.0705 -0.0196 13 7 1.7899 -6.8568 -0.0274 14 6 1.3895 -8.1315 -0.0274 15 6 0.0393 -8.1546 -0.0283 16 7 -0.3842 -6.8547 -0.0230 17 1 -1.3042 -6.5475 -0.0217 18 8 -0.3130 -3.7794 -0.0112 19 7 -0.0137 -2.6099 -0.0062 20 1 -0.4850 0.8401 -0.0004 21 1 2.9034 -4.0922 -0.0238 22 1 2.0360 -8.9965 -0.0309 23 1 -0.5876 -9.0339 -0.0319 RHF calculation, no. of doubly occupied orbitals= 36 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259628160.mol2 23 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:12:02 Heat of formation + Delta-G solvation = 83.307352 kcal Electronic energy + Delta-G solvation = -12299.031388 eV Core-core repulsion = 9922.317849 eV Total energy + Delta-G solvation = -2376.713539 eV No. of doubly occupied orbitals = 36 Molecular weight (most abundant/longest-lived isotopes) = 205.059 amu Computer time = 0.16 seconds Orbital eigenvalues (eV) -44.56524 -42.78653 -35.96327 -33.81658 -33.42026 -32.71944 -29.39231 -28.27150 -23.92557 -23.51127 -22.12601 -21.49674 -20.09430 -18.09154 -17.77602 -17.29057 -16.50949 -15.84281 -15.49377 -15.03463 -14.59305 -14.29764 -13.83354 -13.02480 -12.92675 -12.81200 -11.90372 -11.59567 -11.22923 -11.20063 -11.12472 -10.73521 -10.28370 -8.90909 -8.57478 -6.64106 0.29912 1.33229 1.39907 1.56338 1.57380 2.00591 2.00850 2.23387 2.34571 2.45287 3.26731 4.02747 4.09149 4.35638 4.48419 4.58106 4.67935 4.95972 5.11486 5.31470 5.34860 5.75272 6.23115 6.35700 6.51475 6.82746 7.02038 8.38671 8.49548 Molecular weight = 205.06amu Principal moments of inertia in cm(-1) A = 0.099390 B = 0.007373 C = 0.006881 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 281.650519 B = 3796.675886 C = 4068.479297 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.817 5.817 2 C 0.018 3.982 3 Si 1.003 2.997 4 H -0.261 1.261 5 H -0.270 1.270 6 H -0.251 1.251 7 C -0.476 4.476 8 H 0.098 0.902 9 C 0.133 3.867 10 C -0.243 4.243 11 C -0.003 4.003 12 C 0.252 3.748 13 N -0.493 5.493 14 C -0.052 4.052 15 C -0.013 4.013 16 N -0.548 5.548 17 H 0.435 0.565 18 O 0.034 5.966 19 N -0.434 5.434 20 H 0.283 0.717 21 H 0.164 0.836 22 H 0.205 0.795 23 H 0.236 0.764 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.545 -11.321 -0.045 11.334 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.446 5.446 2 C -0.198 4.198 3 Si 0.822 3.178 4 H -0.186 1.186 5 H -0.194 1.194 6 H -0.174 1.174 7 C -0.514 4.514 8 H 0.116 0.884 9 C -0.013 4.013 10 C -0.268 4.268 11 C -0.067 4.067 12 C -0.007 4.007 13 N -0.215 5.215 14 C -0.201 4.201 15 C -0.149 4.149 16 N -0.152 5.152 17 H 0.276 0.724 18 O -0.015 6.015 19 N -0.162 5.162 20 H 0.093 0.907 21 H 0.182 0.818 22 H 0.222 0.778 23 H 0.252 0.748 Dipole moment (debyes) X Y Z Total from point charges -1.006 -10.284 -0.044 10.333 hybrid contribution -0.223 0.324 -0.014 0.394 sum -1.229 -9.960 -0.058 10.036 Atomic orbital electron populations 1.69979 1.09185 1.30067 1.35386 1.27012 0.95820 1.05088 0.91903 0.84903 0.78736 0.74674 0.79499 1.18577 1.19419 1.17442 1.19192 0.94823 0.88401 1.48998 0.88388 1.22099 0.88225 0.94338 0.96613 1.23673 0.99251 0.91171 1.12704 1.20787 0.89339 0.88607 1.07966 1.19314 0.83525 0.87396 1.10469 1.70266 1.28698 1.03535 1.19039 1.23055 0.94440 0.93965 1.08677 1.23743 0.97282 0.86890 1.07009 1.43550 1.09946 1.07141 1.54585 0.72400 1.84656 1.32617 1.12172 1.72076 1.74670 1.16376 0.91497 1.33680 0.90656 0.81824 0.77776 0.74811 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.82 -47.49 12.04 21.83 0.26 -47.23 14 2 C 0.02 0.96 5.50 85.28 0.47 1.43 14 3 Si 1.00 40.25 29.56 68.60 2.03 42.28 14 4 H -0.26 -10.03 7.11 99.48 0.71 -9.33 14 5 H -0.27 -10.34 7.11 99.48 0.71 -9.63 14 6 H -0.25 -9.53 7.11 99.48 0.71 -8.83 14 7 C -0.48 -27.36 9.48 23.57 0.22 -27.14 14 8 H 0.10 5.19 7.85 -2.91 -0.02 5.16 14 9 C 0.13 7.84 6.99 42.29 0.30 8.14 14 10 C -0.24 -12.55 11.33 24.23 0.27 -12.27 14 11 C 0.00 -0.14 7.37 24.30 0.18 0.04 14 12 C 0.25 9.73 8.02 136.28 1.09 10.82 14 13 N -0.49 -18.20 11.24 -189.68 -2.13 -20.33 14 14 C -0.05 -1.32 11.84 83.69 0.99 -0.33 14 15 C -0.01 -0.26 12.03 83.19 1.00 0.74 14 16 N -0.55 -14.97 6.22 -187.54 -1.17 -16.14 14 17 H 0.44 9.76 8.96 -92.71 -0.83 8.93 14 18 O 0.03 1.79 11.12 66.83 0.74 2.53 14 19 N -0.43 -26.16 10.46 -48.60 -0.51 -26.67 14 20 H 0.28 14.87 8.29 -92.70 -0.77 14.10 14 21 H 0.16 7.74 8.06 -2.91 -0.02 7.72 14 22 H 0.21 3.58 8.06 -2.91 -0.02 3.56 14 23 H 0.24 1.90 8.06 -2.91 -0.02 1.88 14 Total: -1.00 -74.73 223.80 4.18 -70.55 By element: Atomic # 1 Polarization: 13.14 SS G_CDS: 0.43 Total: 13.57 kcal Atomic # 6 Polarization: -23.10 SS G_CDS: 4.53 Total: -18.57 kcal Atomic # 7 Polarization: -106.82 SS G_CDS: -3.54 Total: -110.36 kcal Atomic # 8 Polarization: 1.79 SS G_CDS: 0.74 Total: 2.53 kcal Atomic # 14 Polarization: 40.25 SS G_CDS: 2.03 Total: 42.28 kcal Total: -74.73 4.18 -70.55 kcal The number of atoms in the molecule is 23 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259628160.mol2 23 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 153.860 kcal (2) G-P(sol) polarization free energy of solvation -74.734 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 79.127 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.181 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.553 kcal (6) G-S(sol) free energy of system = (1) + (5) 83.307 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.16 seconds