Wall clock time and date at job start Mon Mar 30 2020 02:11:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31018 * 1 3 3 Si 1.86804 * 120.00245 * 2 1 4 4 H 1.48495 * 109.47181 * 179.97438 * 3 2 1 5 5 H 1.48504 * 109.46741 * 299.99700 * 3 2 1 6 6 H 1.48493 * 109.47189 * 59.99490 * 3 2 1 7 7 C 1.39692 * 120.00065 * 179.97438 * 2 1 3 8 8 H 1.07991 * 120.00003 * 180.02562 * 7 2 1 9 9 C 1.41201 * 119.99675 * 0.02562 * 7 2 1 10 10 C 1.38863 * 126.62932 * 179.97438 * 9 7 2 11 11 O 1.34533 * 106.61916 * 179.76177 * 10 9 7 12 12 C 1.34280 * 108.38145 * 0.37829 * 11 10 9 13 13 N 1.38888 * 125.14975 * 179.86914 * 12 11 10 14 14 C 1.37288 * 126.50519 * 359.88192 * 13 12 11 15 15 C 1.34583 * 106.81749 * 180.27699 * 14 13 12 16 16 N 1.34181 * 108.25594 * 359.74322 * 15 14 13 17 17 C 1.30456 * 109.40191 * 359.97438 * 16 15 14 18 18 N 1.30590 * 109.70114 * 359.60411 * 12 11 10 19 19 H 0.96999 * 119.99928 * 0.02562 * 1 2 3 20 20 H 1.08000 * 126.69169 * 0.02562 * 10 9 7 21 21 H 1.07995 * 126.59241 * 0.05084 * 14 13 12 22 22 H 1.07997 * 125.87137 * 179.70739 * 15 14 13 23 23 H 1.08002 * 125.72967 * 179.97438 * 17 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3102 0.0000 0.0000 3 14 2.2443 1.6177 0.0000 4 1 3.7042 1.3463 0.0006 5 1 1.8855 2.3964 -1.2126 6 1 1.8855 2.3965 1.2124 7 6 2.0087 -1.2098 0.0005 8 1 3.0886 -1.2098 0.0010 9 6 1.3026 -2.4326 0.0005 10 6 1.8534 -3.7073 0.0005 11 8 0.8226 -4.5718 0.0059 12 6 -0.3207 -3.8676 0.0007 13 7 -1.5971 -4.4152 0.0012 14 6 -1.9126 -5.7513 0.0048 15 6 -3.2558 -5.8343 -0.0023 16 7 -3.7539 -4.5883 -0.0043 17 6 -2.7722 -3.7292 0.0018 18 7 -0.0508 -2.5899 0.0007 19 1 -0.4850 0.8400 -0.0004 20 1 2.9043 -3.9562 0.0009 21 1 -1.2166 -6.5771 0.0085 22 1 -3.8335 -6.7468 -0.0063 23 1 -2.8750 -2.6541 0.0016 RHF calculation, no. of doubly occupied orbitals= 36 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259768129.mol2 23 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:11:57 Heat of formation + Delta-G solvation = 72.727113 kcal Electronic energy + Delta-G solvation = -12512.436670 eV Core-core repulsion = 10135.264337 eV Total energy + Delta-G solvation = -2377.172333 eV No. of doubly occupied orbitals = 36 Molecular weight (most abundant/longest-lived isotopes) = 205.059 amu Computer time = 0.17 seconds Orbital eigenvalues (eV) -43.73845 -42.76522 -36.26607 -35.20831 -34.07186 -30.85711 -30.10982 -27.41854 -24.39197 -23.29770 -21.69896 -21.62380 -19.84919 -18.79944 -17.68055 -16.80659 -16.65866 -15.81659 -15.60471 -15.13550 -14.86305 -14.38115 -14.21378 -13.07047 -12.83892 -12.60275 -12.28314 -11.86532 -11.78492 -11.36593 -10.94619 -10.77635 -9.75167 -9.23498 -8.51869 -6.49187 0.20230 0.84205 1.22836 1.43269 1.57347 1.59012 1.99741 2.24075 2.25540 2.62682 3.34697 3.65760 3.67931 4.32635 4.44560 4.63141 4.83114 5.06105 5.15429 5.27239 5.42850 5.63991 6.00834 6.21157 6.60543 6.77641 6.84777 7.38384 8.45252 Molecular weight = 205.06amu Principal moments of inertia in cm(-1) A = 0.056812 B = 0.009257 C = 0.007982 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 492.736556 B = 3023.995155 C = 3506.887806 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.799 5.799 2 C 0.025 3.975 3 Si 0.995 3.005 4 H -0.250 1.250 5 H -0.269 1.269 6 H -0.269 1.269 7 C -0.476 4.476 8 H 0.102 0.898 9 C 0.153 3.847 10 C -0.273 4.273 11 O -0.222 6.222 12 C 0.338 3.662 13 N -0.373 5.373 14 C -0.061 4.061 15 C -0.018 4.018 16 N -0.500 5.500 17 C 0.216 3.784 18 N -0.461 5.461 19 H 0.282 0.718 20 H 0.228 0.772 21 H 0.202 0.798 22 H 0.218 0.782 23 H 0.213 0.787 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.437 -4.894 0.007 4.913 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.424 5.424 2 C -0.192 4.192 3 Si 0.815 3.185 4 H -0.173 1.173 5 H -0.194 1.194 6 H -0.194 1.194 7 C -0.508 4.508 8 H 0.120 0.880 9 C 0.036 3.964 10 C -0.342 4.342 11 O -0.109 6.109 12 C 0.043 3.957 13 N -0.060 5.060 14 C -0.190 4.190 15 C -0.163 4.163 16 N -0.218 5.218 17 C -0.064 4.064 18 N -0.201 5.201 19 H 0.092 0.908 20 H 0.245 0.755 21 H 0.219 0.781 22 H 0.235 0.765 23 H 0.229 0.771 Dipole moment (debyes) X Y Z Total from point charges -1.808 -4.182 0.003 4.556 hybrid contribution 1.689 -0.032 0.007 1.689 sum -0.119 -4.213 0.010 4.215 Atomic orbital electron populations 1.70133 1.08791 1.29642 1.33851 1.26908 0.95801 1.04753 0.91771 0.84958 0.79396 0.75606 0.78508 1.17347 1.19433 1.19447 1.19062 0.94760 0.88478 1.48464 0.88047 1.19797 0.85992 0.94742 0.95852 1.25184 0.90820 0.86593 1.31557 1.83910 1.13882 1.38898 1.74176 1.21733 0.81375 0.85800 1.06792 1.41962 1.01064 1.08524 1.54448 1.23464 0.99500 0.84279 1.11766 1.22956 0.91098 0.96447 1.05835 1.70453 1.29375 1.01475 1.20526 1.25639 0.77022 1.00386 1.03389 1.71538 1.17751 1.10167 1.20639 0.90831 0.75544 0.78064 0.76518 0.77081 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.80 -43.00 11.95 21.79 0.26 -42.74 14 2 C 0.03 1.27 5.49 85.17 0.47 1.74 14 3 Si 0.99 37.72 29.56 68.60 2.03 39.74 14 4 H -0.25 -8.93 7.11 99.48 0.71 -8.23 14 5 H -0.27 -9.93 7.11 99.48 0.71 -9.22 14 6 H -0.27 -9.93 7.11 99.48 0.71 -9.23 14 7 C -0.48 -25.14 9.38 23.35 0.22 -24.92 14 8 H 0.10 4.89 7.84 -2.92 -0.02 4.87 14 9 C 0.15 8.32 6.69 39.33 0.26 8.58 14 10 C -0.27 -13.00 12.28 67.97 0.83 -12.16 14 11 O -0.22 -10.45 10.64 -4.51 -0.05 -10.50 14 12 C 0.34 16.47 8.68 178.97 1.55 18.03 14 13 N -0.37 -15.47 2.96 -471.76 -1.40 -16.87 14 14 C -0.06 -1.99 11.45 83.00 0.95 -1.04 14 15 C -0.02 -0.54 11.85 83.50 0.99 0.45 14 16 N -0.50 -18.08 11.24 -199.59 -2.24 -20.33 14 17 C 0.22 8.61 12.41 179.94 2.23 10.84 14 18 N -0.46 -25.32 9.41 -305.79 -2.88 -28.19 14 19 H 0.28 13.73 8.30 -92.71 -0.77 12.96 14 20 H 0.23 8.86 8.06 -2.91 -0.02 8.84 14 21 H 0.20 5.29 8.06 -2.91 -0.02 5.26 14 22 H 0.22 4.32 8.06 -2.91 -0.02 4.29 14 23 H 0.21 8.41 8.06 -2.91 -0.02 8.38 14 Total: -1.00 -63.91 223.68 4.47 -59.44 By element: Atomic # 1 Polarization: 16.70 SS G_CDS: 1.23 Total: 17.94 kcal Atomic # 6 Polarization: -6.00 SS G_CDS: 7.51 Total: 1.50 kcal Atomic # 7 Polarization: -101.87 SS G_CDS: -6.26 Total: -108.13 kcal Atomic # 8 Polarization: -10.45 SS G_CDS: -0.05 Total: -10.50 kcal Atomic # 14 Polarization: 37.72 SS G_CDS: 2.03 Total: 39.74 kcal Total: -63.91 4.47 -59.44 kcal The number of atoms in the molecule is 23 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259768129.mol2 23 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 132.167 kcal (2) G-P(sol) polarization free energy of solvation -63.907 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 68.260 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.467 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.440 kcal (6) G-S(sol) free energy of system = (1) + (5) 72.727 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.17 seconds