Wall clock time and date at job start Mon Mar 30 2020 02:06:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30973 * 1 3 3 Si 1.86803 * 119.99898 * 2 1 4 4 H 1.48497 * 109.47402 * 270.00082 * 3 2 1 5 5 H 1.48504 * 109.47041 * 29.99946 * 3 2 1 6 6 H 1.48498 * 109.47080 * 149.99877 * 3 2 1 7 7 C 1.39811 * 120.00191 * 180.02562 * 2 1 3 8 8 H 1.07996 * 119.99987 * 179.97438 * 7 2 1 9 9 C 1.41094 * 120.00070 * 0.02562 * 7 2 1 10 10 C 1.38794 * 127.40134 * 359.97007 * 9 7 2 11 11 O 1.33829 * 108.28606 * 180.02562 * 10 9 7 12 12 C 1.34020 * 111.38277 * 0.02562 * 11 10 9 13 13 C 1.35705 * 109.42219 * 359.97438 * 12 11 10 14 14 C 1.47524 * 127.14373 * 179.73547 * 13 12 11 15 15 N 1.31374 * 125.74394 * 179.71539 * 14 13 12 16 16 C 1.34281 * 108.61752 * 179.87541 * 15 14 13 17 17 C 1.34429 * 107.86523 * 0.39380 * 16 15 14 18 18 O 1.34464 * 125.74276 * 0.03060 * 14 13 12 19 19 H 0.97003 * 119.99970 * 359.97438 * 1 2 3 20 20 H 1.08001 * 125.85711 * 0.02562 * 10 9 7 21 21 H 1.08000 * 125.29211 * 180.02562 * 12 11 10 22 22 H 1.08002 * 126.05994 * 180.15672 * 16 15 14 23 23 H 1.08001 * 126.34096 * 179.75983 * 17 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3097 0.0000 0.0000 3 14 2.2437 1.6178 0.0000 4 1 2.4912 2.0465 -1.4000 5 1 1.4411 2.6527 0.7000 6 1 3.5412 1.4402 0.7001 7 6 2.0088 -1.2108 -0.0005 8 1 3.0888 -1.2107 -0.0010 9 6 1.3034 -2.4327 -0.0016 10 6 -0.0730 -2.6116 -0.0017 11 8 -0.3256 -3.9258 -0.0024 12 6 0.8076 -4.6412 -0.0022 13 6 1.8724 -3.7999 -0.0019 14 6 3.3004 -4.1704 0.0038 15 7 4.3110 -3.3310 -0.0015 16 6 5.4538 -4.0360 0.0093 17 6 5.1331 -5.3414 0.0126 18 8 3.7866 -5.4240 0.0092 19 1 -0.4850 0.8401 0.0004 20 1 -0.8131 -1.8251 -0.0013 21 1 0.8647 -5.7197 -0.0030 22 1 6.4533 -3.6267 0.0108 23 1 5.8252 -6.1705 0.0172 RHF calculation, no. of doubly occupied orbitals= 36 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259835755.mol2 23 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:06:52 Heat of formation + Delta-G solvation = 28.574663 kcal Electronic energy + Delta-G solvation = -12550.725461 eV Core-core repulsion = 10139.345783 eV Total energy + Delta-G solvation = -2411.379678 eV No. of doubly occupied orbitals = 36 Molecular weight (most abundant/longest-lived isotopes) = 205.053 amu Computer time = 0.16 seconds Orbital eigenvalues (eV) -42.45238 -40.49943 -34.14730 -33.76270 -31.87714 -29.09803 -27.79886 -25.32894 -22.54594 -21.90730 -19.83151 -19.30472 -17.44315 -16.49854 -15.86406 -15.45027 -14.62668 -14.33937 -14.22053 -13.57310 -12.62964 -12.48146 -12.03174 -11.39633 -11.22616 -10.92623 -10.71790 -10.07623 -9.88087 -9.62586 -9.39195 -9.13653 -7.61885 -7.04618 -6.63360 -4.23391 1.82064 2.94197 3.07139 3.17138 3.25060 3.38056 3.73926 4.06973 4.18355 4.54214 4.95597 5.45236 5.49152 5.58240 6.08134 6.32912 6.45415 6.80851 6.93086 7.19547 7.35431 7.57741 8.01252 8.48051 8.55367 8.75021 9.02781 9.10630 10.38255 Molecular weight = 205.05amu Principal moments of inertia in cm(-1) A = 0.031471 B = 0.012790 C = 0.009123 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 889.502581 B = 2188.616479 C = 3068.272251 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.828 5.828 2 C 0.056 3.944 3 Si 0.925 3.075 4 H -0.272 1.272 5 H -0.280 1.280 6 H -0.263 1.263 7 C -0.410 4.410 8 H 0.095 0.905 9 C 0.042 3.958 10 C -0.185 4.185 11 O -0.182 6.182 12 C -0.026 4.026 13 C -0.191 4.191 14 C 0.309 3.691 15 N -0.483 5.483 16 C -0.036 4.036 17 C -0.122 4.122 18 O -0.216 6.216 19 H 0.278 0.722 20 H 0.226 0.774 21 H 0.182 0.818 22 H 0.175 0.825 23 H 0.205 0.795 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.942 -5.448 0.030 7.356 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.459 5.459 2 C -0.155 4.155 3 Si 0.750 3.250 4 H -0.197 1.197 5 H -0.205 1.205 6 H -0.187 1.187 7 C -0.441 4.441 8 H 0.113 0.887 9 C 0.039 3.961 10 C -0.252 4.252 11 O -0.077 6.077 12 C -0.099 4.099 13 C -0.195 4.195 14 C 0.108 3.892 15 N -0.212 5.212 16 C -0.176 4.176 17 C -0.193 4.193 18 O -0.105 6.105 19 H 0.089 0.911 20 H 0.242 0.758 21 H 0.198 0.802 22 H 0.192 0.808 23 H 0.221 0.779 Dipole moment (debyes) X Y Z Total from point charges 4.392 -4.729 0.026 6.454 hybrid contribution 1.013 -0.031 -0.005 1.013 sum 5.404 -4.761 0.021 7.202 Atomic orbital electron populations 1.69313 1.07472 1.28644 1.40460 1.25821 0.94828 1.01335 0.93564 0.86020 0.80099 0.79921 0.78945 1.19738 1.20540 1.18661 1.19193 0.95605 0.88270 1.41010 0.88654 1.18895 0.90794 0.89282 0.97119 1.25620 0.98056 0.78767 1.22724 1.83533 1.32534 1.20707 1.70885 1.23355 0.83886 0.95917 1.06784 1.18586 0.84164 0.96173 1.20624 1.23261 0.94243 0.75641 0.96065 1.70972 0.96971 1.32696 1.20561 1.23360 0.98735 0.90624 1.04895 1.24687 0.81480 1.00158 1.12935 1.84509 1.21153 1.33660 1.71166 0.91075 0.75801 0.80160 0.80823 0.77868 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.83 -21.73 10.40 55.54 0.58 -21.15 14 2 C 0.06 1.47 5.49 -17.33 -0.10 1.37 14 3 Si 0.92 20.15 29.56 -169.99 -5.02 15.12 14 4 H -0.27 -5.84 7.11 56.52 0.40 -5.44 14 5 H -0.28 -5.88 7.11 56.52 0.40 -5.48 14 6 H -0.26 -5.76 7.11 56.52 0.40 -5.35 14 7 C -0.41 -11.54 9.23 -37.91 -0.35 -11.89 14 8 H 0.10 2.72 6.63 -52.49 -0.35 2.37 14 9 C 0.04 1.18 6.15 -104.57 -0.64 0.54 14 10 C -0.18 -4.91 11.12 30.94 0.34 -4.57 14 11 O -0.18 -4.37 10.49 7.72 0.08 -4.29 14 12 C -0.03 -0.58 11.99 29.83 0.36 -0.22 14 13 C -0.19 -4.79 6.34 -102.98 -0.65 -5.44 14 14 C 0.31 7.23 8.13 -13.96 -0.11 7.12 14 15 N -0.48 -11.26 9.95 -11.78 -0.12 -11.37 14 16 C -0.04 -0.65 11.87 -17.83 -0.21 -0.86 14 17 C -0.12 -1.96 12.17 29.39 0.36 -1.60 14 18 O -0.22 -4.28 10.81 3.61 0.04 -4.24 14 19 H 0.28 6.66 8.30 -40.82 -0.34 6.32 14 20 H 0.23 6.02 5.79 -52.49 -0.30 5.71 14 21 H 0.18 3.14 8.06 -52.49 -0.42 2.71 14 22 H 0.17 2.42 8.06 -52.49 -0.42 2.00 14 23 H 0.20 2.15 8.06 -52.49 -0.42 1.72 14 LS Contribution 219.92 15.07 3.31 3.31 Total: -1.00 -30.42 219.92 -3.19 -33.61 By element: Atomic # 1 Polarization: 5.61 SS G_CDS: -1.05 Total: 4.56 kcal Atomic # 6 Polarization: -14.55 SS G_CDS: -1.01 Total: -15.55 kcal Atomic # 7 Polarization: -32.98 SS G_CDS: 0.46 Total: -32.52 kcal Atomic # 8 Polarization: -8.65 SS G_CDS: 0.12 Total: -8.53 kcal Atomic # 14 Polarization: 20.15 SS G_CDS: -5.02 Total: 15.12 kcal Total LS contribution 3.31 Total: 3.31 kcal Total: -30.42 -3.19 -33.61 kcal The number of atoms in the molecule is 23 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259835755.mol2 23 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 62.184 kcal (2) G-P(sol) polarization free energy of solvation -30.419 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 31.766 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.191 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.610 kcal (6) G-S(sol) free energy of system = (1) + (5) 28.575 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.16 seconds