Wall clock time and date at job start Mon Mar 30 2020 01:57:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53002 * 109.46763 * 2 1 4 4 C 1.50694 * 109.47234 * 180.02562 * 3 2 1 5 5 C 1.37638 * 120.13130 * 89.99690 * 4 3 2 6 6 C 1.50709 * 119.87261 * 359.97438 * 5 4 3 7 7 C 1.38613 * 120.25354 * 179.97438 * 5 4 3 8 8 C 1.38656 * 120.49552 * 0.02755 * 7 5 4 9 9 C 1.37594 * 120.25333 * 0.24844 * 8 7 5 10 10 C 1.40698 * 120.13017 * 269.97889 * 4 3 2 11 11 C 1.41400 * 120.23971 * 0.02562 * 10 4 3 12 12 H 1.07997 * 120.00390 * 25.26394 * 11 10 4 13 13 C 1.39947 * 119.99832 * 205.26598 * 11 10 4 14 14 N 1.30815 * 120.00321 * 15.12639 * 13 11 10 15 15 Si 1.86808 * 119.99652 * 195.12744 * 13 11 10 16 16 H 1.48492 * 109.47086 * 60.00114 * 15 13 11 17 17 H 1.48503 * 109.46523 * 179.97438 * 15 13 11 18 18 H 1.48501 * 109.46904 * 299.99485 * 15 13 11 19 19 H 1.09002 * 109.46939 * 180.02562 * 1 2 3 20 20 H 1.08997 * 109.47448 * 299.99488 * 1 2 3 21 21 H 1.08993 * 109.47518 * 60.00357 * 1 2 3 22 22 H 1.08994 * 109.46954 * 240.00420 * 2 1 3 23 23 H 1.08993 * 109.47518 * 119.99643 * 2 1 3 24 24 H 1.09003 * 109.47101 * 59.99864 * 3 2 1 25 25 H 1.09006 * 109.47086 * 300.00095 * 3 2 1 26 26 H 1.09006 * 109.46592 * 269.97693 * 6 5 4 27 27 H 1.08995 * 109.47317 * 29.97573 * 6 5 4 28 28 H 1.08996 * 109.46825 * 149.98058 * 6 5 4 29 29 H 1.07996 * 119.75318 * 180.02562 * 7 5 4 30 30 H 1.08007 * 119.87475 * 179.97438 * 8 7 5 31 31 H 1.08001 * 120.13167 * 179.72342 * 9 8 7 32 32 H 0.96997 * 120.00295 * 180.02562 * 14 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 6 3.5468 1.4427 -0.0006 5 6 4.2373 1.4428 -1.1913 6 6 3.4833 1.4423 -2.4962 7 6 5.6234 1.4435 -1.1949 8 6 6.3301 1.4434 -0.0019 9 6 5.6608 1.4375 1.2003 10 6 4.2536 1.4430 1.2160 11 6 3.5551 1.4427 2.4453 12 1 2.5531 1.0430 2.4970 13 6 4.1621 1.9603 3.5952 14 7 5.2337 2.7033 3.4911 15 14 3.4420 1.5900 5.2787 16 1 3.4395 0.1223 5.5040 17 1 4.2645 2.2496 6.3246 18 1 2.0503 2.1037 5.3456 19 1 -0.3633 -1.0277 0.0005 20 1 -0.3634 0.5137 0.8900 21 1 -0.3634 0.5137 -0.8899 22 1 1.8933 -0.5137 -0.8900 23 1 1.8934 -0.5137 0.8899 24 1 1.6765 1.9564 0.8900 25 1 1.6765 1.9564 -0.8900 26 1 3.3024 0.4144 -2.8108 27 1 2.5305 1.9553 -2.3656 28 1 4.0717 1.9566 -3.2560 29 1 6.1569 1.4440 -2.1338 30 1 7.4101 1.4435 -0.0164 31 1 6.2133 1.4330 2.1283 32 1 5.6547 3.0617 4.2881 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259861232.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:57:16 Heat of formation + Delta-G solvation = -12.539119 kcal Electronic energy + Delta-G solvation = -13106.896045 eV Core-core repulsion = 11030.825640 eV Total energy + Delta-G solvation = -2076.070405 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 204.121 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -38.08404 -34.16985 -33.78044 -31.06115 -30.00490 -26.59125 -25.14448 -24.62101 -21.11329 -20.29159 -18.99119 -16.80301 -15.40768 -14.72473 -14.41492 -13.57967 -13.41255 -13.08124 -12.70354 -12.33642 -12.01232 -11.65793 -11.48283 -11.26345 -10.99994 -10.96391 -10.85438 -10.49825 -10.41653 -10.10214 -9.89370 -9.31840 -9.15193 -9.04241 -7.23798 -7.09407 -6.66885 -4.29042 2.84654 3.04057 3.08782 3.11570 3.27937 3.96894 4.68393 5.57242 5.65925 5.79051 5.82127 6.02022 6.06812 6.25904 6.33201 6.37786 6.46008 6.56886 6.62489 6.64562 6.67786 6.85910 7.04910 7.08796 7.22115 7.37809 7.52547 7.73122 8.01693 8.15002 8.18761 8.38328 8.71211 8.97522 9.06751 10.26376 Molecular weight = 204.12amu Principal moments of inertia in cm(-1) A = 0.026047 B = 0.013683 C = 0.009385 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1074.736826 B = 2045.825476 C = 2982.684197 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.116 4.116 3 C -0.056 4.056 4 C -0.187 4.187 5 C -0.067 4.067 6 C -0.105 4.105 7 C -0.237 4.237 8 C -0.110 4.110 9 C -0.166 4.166 10 C 0.115 3.885 11 C -0.459 4.459 12 H 0.079 0.921 13 C 0.075 3.925 14 N -0.798 5.798 15 Si 0.905 3.095 16 H -0.265 1.265 17 H -0.279 1.279 18 H -0.266 1.266 19 H 0.044 0.956 20 H 0.051 0.949 21 H 0.046 0.954 22 H 0.051 0.949 23 H 0.062 0.938 24 H 0.065 0.935 25 H 0.047 0.953 26 H 0.052 0.948 27 H 0.058 0.942 28 H 0.047 0.953 29 H 0.084 0.916 30 H 0.085 0.915 31 H 0.118 0.882 32 H 0.279 0.721 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.302 -2.436 -3.036 5.802 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.154 4.154 3 C -0.093 4.093 4 C -0.188 4.188 5 C -0.067 4.067 6 C -0.162 4.162 7 C -0.257 4.257 8 C -0.128 4.128 9 C -0.185 4.185 10 C 0.113 3.887 11 C -0.489 4.489 12 H 0.097 0.903 13 C -0.142 4.142 14 N -0.424 5.424 15 Si 0.729 3.271 16 H -0.189 1.189 17 H -0.205 1.205 18 H -0.191 1.191 19 H 0.063 0.937 20 H 0.070 0.930 21 H 0.065 0.935 22 H 0.070 0.930 23 H 0.081 0.919 24 H 0.083 0.917 25 H 0.066 0.934 26 H 0.070 0.930 27 H 0.076 0.924 28 H 0.066 0.934 29 H 0.102 0.898 30 H 0.103 0.897 31 H 0.136 0.864 32 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges -4.144 -2.288 -2.884 5.543 hybrid contribution -0.073 -0.046 0.831 0.836 sum -4.218 -2.335 -2.053 5.240 Atomic orbital electron populations 1.21797 0.97251 1.00452 1.01166 1.21478 0.93881 0.98345 1.01677 1.20243 0.93251 0.95184 1.00652 1.19524 0.93644 1.13228 0.92444 1.19173 0.93334 1.00778 0.93404 1.20727 0.99527 1.00442 0.95492 1.20213 0.93172 1.16230 0.96065 1.20658 0.97185 1.01485 0.93482 1.21344 0.94761 1.06025 0.96379 1.17443 0.91704 0.87945 0.91599 1.19538 1.01502 1.35571 0.92273 0.90282 1.25897 0.94320 0.92775 1.01190 1.69812 1.17700 1.23478 1.31424 0.86429 0.79821 0.79789 0.81031 1.18926 1.20454 1.19059 0.93704 0.93019 0.93464 0.93033 0.91885 0.91670 0.93432 0.92955 0.92354 0.93430 0.89819 0.89712 0.86439 0.91028 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.23 9.91 37.16 0.37 -1.86 16 2 C -0.12 -2.12 5.90 -26.73 -0.16 -2.27 16 3 C -0.06 -1.16 4.32 -27.88 -0.12 -1.28 16 4 C -0.19 -4.51 5.19 -103.92 -0.54 -5.05 16 5 C -0.07 -1.52 5.87 -104.70 -0.61 -2.14 16 6 C -0.11 -1.92 9.60 36.01 0.35 -1.58 16 7 C -0.24 -5.52 9.70 -39.29 -0.38 -5.90 16 8 C -0.11 -2.68 10.02 -39.66 -0.40 -3.07 16 9 C -0.17 -4.42 8.69 -38.88 -0.34 -4.75 16 10 C 0.12 3.08 5.57 -106.82 -0.60 2.48 16 11 C -0.46 -12.05 8.15 -37.74 -0.31 -12.36 16 12 H 0.08 1.99 6.58 -52.49 -0.35 1.64 16 13 C 0.08 1.90 5.19 -17.34 -0.09 1.81 16 14 N -0.80 -20.91 10.87 55.55 0.60 -20.31 16 15 Si 0.90 18.87 29.59 -169.99 -5.03 13.84 16 16 H -0.26 -5.48 7.11 56.52 0.40 -5.08 16 17 H -0.28 -5.70 7.11 56.52 0.40 -5.30 16 18 H -0.27 -5.47 7.11 56.52 0.40 -5.07 16 19 H 0.04 0.59 8.14 -51.93 -0.42 0.17 16 20 H 0.05 0.76 8.14 -51.93 -0.42 0.34 16 21 H 0.05 0.64 8.14 -51.93 -0.42 0.22 16 22 H 0.05 0.92 8.14 -51.93 -0.42 0.49 16 23 H 0.06 1.24 7.89 -51.93 -0.41 0.83 16 24 H 0.06 1.42 6.77 -51.93 -0.35 1.06 16 25 H 0.05 0.90 5.93 -51.93 -0.31 0.59 16 26 H 0.05 0.88 8.14 -51.93 -0.42 0.46 16 27 H 0.06 1.00 5.93 -51.93 -0.31 0.70 16 28 H 0.05 0.79 8.08 -51.93 -0.42 0.37 16 29 H 0.08 1.75 8.06 -52.49 -0.42 1.32 16 30 H 0.08 1.86 8.06 -52.48 -0.42 1.44 16 31 H 0.12 3.23 6.14 -52.49 -0.32 2.90 16 32 H 0.28 6.70 8.30 -40.82 -0.34 6.36 16 LS Contribution 262.34 15.07 3.95 3.95 Total: -1.00 -27.17 262.34 -7.86 -35.02 By element: Atomic # 1 Polarization: 8.02 SS G_CDS: -4.56 Total: 3.46 kcal Atomic # 6 Polarization: -33.14 SS G_CDS: -2.83 Total: -35.97 kcal Atomic # 7 Polarization: -20.91 SS G_CDS: 0.60 Total: -20.31 kcal Atomic # 14 Polarization: 18.87 SS G_CDS: -5.03 Total: 13.84 kcal Total LS contribution 3.95 Total: 3.95 kcal Total: -27.17 -7.86 -35.02 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259861232.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 22.485 kcal (2) G-P(sol) polarization free energy of solvation -27.166 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -4.681 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.858 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.025 kcal (6) G-S(sol) free energy of system = (1) + (5) -12.539 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds