Wall clock time and date at job start Mon Mar 30 2020 01:57:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53002 * 109.46763 * 2 1 4 4 C 1.50694 * 109.47234 * 180.02562 * 3 2 1 5 5 C 1.37638 * 120.13130 * 89.99690 * 4 3 2 6 6 C 1.50709 * 119.87261 * 359.97438 * 5 4 3 7 7 C 1.38613 * 120.25354 * 179.97438 * 5 4 3 8 8 C 1.38656 * 120.49552 * 0.02755 * 7 5 4 9 9 C 1.37594 * 120.25333 * 0.24844 * 8 7 5 10 10 C 1.40698 * 120.13017 * 269.97889 * 4 3 2 11 11 C 1.41400 * 120.23971 * 0.02562 * 10 4 3 12 12 H 1.07997 * 120.00390 * 25.26394 * 11 10 4 13 13 C 1.39947 * 119.99832 * 205.26598 * 11 10 4 14 14 N 1.30815 * 120.00321 * 15.12639 * 13 11 10 15 15 Si 1.86808 * 119.99652 * 195.12744 * 13 11 10 16 16 H 1.48492 * 109.47086 * 60.00114 * 15 13 11 17 17 H 1.48503 * 109.46523 * 179.97438 * 15 13 11 18 18 H 1.48501 * 109.46904 * 299.99485 * 15 13 11 19 19 H 1.09002 * 109.46939 * 180.02562 * 1 2 3 20 20 H 1.08997 * 109.47448 * 299.99488 * 1 2 3 21 21 H 1.08993 * 109.47518 * 60.00357 * 1 2 3 22 22 H 1.08994 * 109.46954 * 240.00420 * 2 1 3 23 23 H 1.08993 * 109.47518 * 119.99643 * 2 1 3 24 24 H 1.09003 * 109.47101 * 59.99864 * 3 2 1 25 25 H 1.09006 * 109.47086 * 300.00095 * 3 2 1 26 26 H 1.09006 * 109.46592 * 269.97693 * 6 5 4 27 27 H 1.08995 * 109.47317 * 29.97573 * 6 5 4 28 28 H 1.08996 * 109.46825 * 149.98058 * 6 5 4 29 29 H 1.07996 * 119.75318 * 180.02562 * 7 5 4 30 30 H 1.08007 * 119.87475 * 179.97438 * 8 7 5 31 31 H 1.08001 * 120.13167 * 179.72342 * 9 8 7 32 32 H 0.96997 * 120.00295 * 180.02562 * 14 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 6 3.5468 1.4427 -0.0006 5 6 4.2373 1.4428 -1.1913 6 6 3.4833 1.4423 -2.4962 7 6 5.6234 1.4435 -1.1949 8 6 6.3301 1.4434 -0.0019 9 6 5.6608 1.4375 1.2003 10 6 4.2536 1.4430 1.2160 11 6 3.5551 1.4427 2.4453 12 1 2.5531 1.0430 2.4970 13 6 4.1621 1.9603 3.5952 14 7 5.2337 2.7033 3.4911 15 14 3.4420 1.5900 5.2787 16 1 3.4395 0.1223 5.5040 17 1 4.2645 2.2496 6.3246 18 1 2.0503 2.1037 5.3456 19 1 -0.3633 -1.0277 0.0005 20 1 -0.3634 0.5137 0.8900 21 1 -0.3634 0.5137 -0.8899 22 1 1.8933 -0.5137 -0.8900 23 1 1.8934 -0.5137 0.8899 24 1 1.6765 1.9564 0.8900 25 1 1.6765 1.9564 -0.8900 26 1 3.3024 0.4144 -2.8108 27 1 2.5305 1.9553 -2.3656 28 1 4.0717 1.9566 -3.2560 29 1 6.1569 1.4440 -2.1338 30 1 7.4101 1.4435 -0.0164 31 1 6.2133 1.4330 2.1283 32 1 5.6547 3.0617 4.2881 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259861232.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:57:15 Heat of formation + Delta-G solvation = -25.174101 kcal Electronic energy + Delta-G solvation = -13107.443939 eV Core-core repulsion = 11030.825640 eV Total energy + Delta-G solvation = -2076.618299 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 204.121 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -39.89740 -35.85252 -35.54951 -32.79313 -31.73908 -28.25357 -26.93740 -26.31533 -22.65117 -22.11809 -20.77992 -18.71550 -17.22728 -16.43469 -16.13345 -15.30742 -14.94086 -14.59852 -14.32811 -13.98241 -13.54626 -13.35293 -13.21313 -12.79992 -12.67912 -12.59329 -12.41335 -12.12121 -12.06589 -11.73924 -11.49615 -11.08302 -11.00543 -10.86036 -9.16368 -8.94636 -8.55488 -6.26992 1.02836 1.15770 1.37125 1.47917 1.54825 2.21532 2.78616 3.74796 4.24965 4.29945 4.41699 4.44809 4.59684 4.74121 4.76375 4.86766 4.94822 5.07784 5.12618 5.17555 5.21015 5.23977 5.34009 5.39010 5.52157 5.63740 5.67195 5.87312 6.12012 6.26373 6.26793 6.48820 6.78411 7.03001 7.14844 8.39598 Molecular weight = 204.12amu Principal moments of inertia in cm(-1) A = 0.026047 B = 0.013683 C = 0.009385 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1074.736826 B = 2045.825476 C = 2982.684197 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.110 4.110 3 C -0.052 4.052 4 C -0.200 4.200 5 C -0.076 4.076 6 C -0.100 4.100 7 C -0.242 4.242 8 C -0.120 4.120 9 C -0.199 4.199 10 C 0.082 3.918 11 C -0.487 4.487 12 H 0.080 0.920 13 C 0.031 3.969 14 N -0.833 5.833 15 Si 0.975 3.025 16 H -0.262 1.262 17 H -0.271 1.271 18 H -0.258 1.258 19 H 0.062 0.938 20 H 0.048 0.952 21 H 0.064 0.936 22 H 0.057 0.943 23 H 0.038 0.962 24 H 0.046 0.954 25 H 0.068 0.932 26 H 0.070 0.930 27 H 0.069 0.931 28 H 0.065 0.935 29 H 0.112 0.888 30 H 0.102 0.898 31 H 0.097 0.903 32 H 0.284 0.716 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.727 -2.841 -4.191 7.644 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.148 4.148 3 C -0.089 4.089 4 C -0.201 4.201 5 C -0.076 4.076 6 C -0.156 4.156 7 C -0.261 4.261 8 C -0.138 4.138 9 C -0.219 4.219 10 C 0.080 3.920 11 C -0.516 4.516 12 H 0.098 0.902 13 C -0.182 4.182 14 N -0.460 5.460 15 Si 0.797 3.203 16 H -0.186 1.186 17 H -0.196 1.196 18 H -0.182 1.182 19 H 0.082 0.918 20 H 0.067 0.933 21 H 0.083 0.917 22 H 0.076 0.924 23 H 0.057 0.943 24 H 0.064 0.936 25 H 0.087 0.913 26 H 0.089 0.911 27 H 0.087 0.913 28 H 0.084 0.916 29 H 0.130 0.870 30 H 0.120 0.880 31 H 0.115 0.885 32 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges -5.570 -2.693 -4.055 7.398 hybrid contribution 0.421 0.087 1.064 1.147 sum -5.149 -2.606 -2.991 6.500 Atomic orbital electron populations 1.21737 0.94363 1.01970 1.01926 1.21387 0.96360 0.96267 1.00767 1.20246 0.91078 0.96878 1.00672 1.20001 0.95662 1.12205 0.92215 1.19732 0.93661 0.99070 0.95110 1.20747 0.99630 1.02051 0.93221 1.20623 0.93869 1.15001 0.96593 1.20928 0.98321 1.01137 0.93420 1.21323 0.95249 1.08779 0.96536 1.17855 0.92123 0.88930 0.93114 1.19758 1.01877 1.36751 0.93250 0.90230 1.26747 0.94584 0.92071 1.04811 1.69893 1.19046 1.24391 1.32648 0.85352 0.79279 0.79562 0.76143 1.18626 1.19553 1.18213 0.91847 0.93275 0.91707 0.92411 0.94331 0.93557 0.91316 0.91107 0.91253 0.91569 0.87018 0.87991 0.88511 0.90564 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.86 9.91 71.98 0.71 -3.15 16 2 C -0.11 -3.85 5.90 30.59 0.18 -3.67 16 3 C -0.05 -2.08 4.32 29.85 0.13 -1.95 16 4 C -0.20 -9.60 5.19 -19.41 -0.10 -9.70 16 5 C -0.08 -3.32 5.87 -19.91 -0.12 -3.44 16 6 C -0.10 -3.29 9.60 71.24 0.68 -2.60 16 7 C -0.24 -10.90 9.70 22.46 0.22 -10.68 16 8 C -0.12 -5.90 10.02 22.22 0.22 -5.68 16 9 C -0.20 -11.04 8.69 22.73 0.20 -10.84 16 10 C 0.08 4.50 5.57 -21.29 -0.12 4.38 16 11 C -0.49 -26.40 8.15 23.46 0.19 -26.21 16 12 H 0.08 4.14 6.58 -2.91 -0.02 4.12 16 13 C 0.03 1.62 5.19 85.26 0.44 2.07 16 14 N -0.83 -45.22 10.87 21.83 0.24 -44.99 16 15 Si 0.98 39.30 29.59 68.60 2.03 41.33 16 16 H -0.26 -10.33 7.11 99.48 0.71 -9.62 16 17 H -0.27 -10.43 7.11 99.48 0.71 -9.72 16 18 H -0.26 -9.97 7.11 99.48 0.71 -9.27 16 19 H 0.06 1.49 8.14 -2.39 -0.02 1.47 16 20 H 0.05 1.35 8.14 -2.39 -0.02 1.33 16 21 H 0.06 1.53 8.14 -2.39 -0.02 1.52 16 22 H 0.06 1.92 8.14 -2.39 -0.02 1.91 16 23 H 0.04 1.51 7.89 -2.39 -0.02 1.49 16 24 H 0.05 2.02 6.77 -2.39 -0.02 2.00 16 25 H 0.07 2.44 5.93 -2.38 -0.01 2.42 16 26 H 0.07 2.09 8.14 -2.38 -0.02 2.07 16 27 H 0.07 2.12 5.93 -2.39 -0.01 2.11 16 28 H 0.07 1.93 8.08 -2.39 -0.02 1.91 16 29 H 0.11 4.34 8.06 -2.91 -0.02 4.32 16 30 H 0.10 4.50 8.06 -2.91 -0.02 4.47 16 31 H 0.10 5.63 6.14 -2.91 -0.02 5.61 16 32 H 0.28 14.07 8.30 -92.71 -0.77 13.30 16 Total: -1.00 -59.69 262.34 6.00 -53.69 By element: Atomic # 1 Polarization: 20.34 SS G_CDS: 1.09 Total: 21.43 kcal Atomic # 6 Polarization: -74.11 SS G_CDS: 2.64 Total: -71.47 kcal Atomic # 7 Polarization: -45.22 SS G_CDS: 0.24 Total: -44.99 kcal Atomic # 14 Polarization: 39.30 SS G_CDS: 2.03 Total: 41.33 kcal Total: -59.69 6.00 -53.69 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259861232.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 28.516 kcal (2) G-P(sol) polarization free energy of solvation -59.687 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -31.171 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.997 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -53.690 kcal (6) G-S(sol) free energy of system = (1) + (5) -25.174 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds