Wall clock time and date at job start Mon Mar 30 2020 02:17:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81398 * 1 3 3 O 1.42108 * 110.54069 * 2 1 4 4 O 1.42093 * 110.54343 * 223.24801 * 2 1 3 5 5 N 1.65598 * 104.44967 * 111.62131 * 2 1 3 6 6 C 1.47584 * 134.48943 * 90.00139 * 5 2 1 7 7 C 1.53947 * 86.11565 * 155.35821 * 6 5 2 8 8 C 1.47576 * 134.49559 * 270.00185 * 5 2 1 9 9 H 1.09001 * 113.87212 * 90.32783 * 8 5 2 10 10 C 1.50699 * 113.77030 * 318.93829 * 8 5 2 11 11 H 1.08000 * 119.99826 * 4.00618 * 10 8 5 12 12 C 1.37879 * 120.00248 * 183.99921 * 10 8 5 13 13 N 1.31507 * 120.00032 * 180.02562 * 12 10 8 14 14 Si 1.86798 * 119.99833 * 0.02562 * 12 10 8 15 15 H 1.48493 * 109.47148 * 89.99754 * 14 12 10 16 16 H 1.48501 * 109.46870 * 210.00182 * 14 12 10 17 17 H 1.48501 * 109.47112 * 329.99614 * 14 12 10 18 18 H 1.09003 * 109.47277 * 308.37505 * 1 2 3 19 19 H 1.09003 * 109.47503 * 68.37367 * 1 2 3 20 20 H 1.08998 * 109.47240 * 188.37519 * 1 2 3 21 21 H 1.09001 * 113.76908 * 41.05740 * 6 5 2 22 22 H 1.08997 * 113.76763 * 269.66003 * 6 5 2 23 23 H 1.08997 * 113.73645 * 137.95305 * 7 6 5 24 24 H 1.08999 * 113.74195 * 269.25717 * 7 6 5 25 25 H 0.97006 * 120.00151 * 180.02562 * 13 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8140 0.0000 0.0000 3 8 2.3126 1.3307 0.0000 4 8 2.3126 -0.9692 -0.9117 5 7 2.2272 -0.5909 1.4908 6 6 2.4853 -1.9387 2.0339 7 6 3.3357 -1.2304 3.1040 8 6 2.4853 0.0187 2.8098 9 1 1.5982 0.1040 3.4374 10 6 3.2836 1.2951 2.7433 11 1 3.5538 1.7137 1.7851 12 6 3.6691 1.9285 3.9058 13 7 4.3653 3.0426 3.8477 14 14 3.2023 1.2040 5.5631 15 1 4.2660 0.2705 6.0125 16 1 3.0511 2.2976 6.5563 17 1 1.9184 0.4683 5.4378 18 1 -0.3634 0.6380 0.8057 19 1 -0.3634 0.3787 -0.9553 20 1 -0.3633 -1.0167 0.1497 21 1 3.0627 -2.5782 1.3663 22 1 1.5972 -2.4292 2.4322 23 1 3.1971 -1.6289 4.1090 24 1 4.3849 -1.1216 2.8295 25 1 4.6369 3.4881 4.6656 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259880103.mol2 25 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:17:55 Heat of formation + Delta-G solvation = -59.627081 kcal Electronic energy + Delta-G solvation = -12086.680579 eV Core-core repulsion = 9806.920137 eV Total energy + Delta-G solvation = -2279.760441 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 205.056 amu Computer time = 0.16 seconds Orbital eigenvalues (eV) -39.71582 -37.94866 -36.80150 -34.48929 -30.32873 -29.58626 -28.82008 -24.40623 -21.84200 -19.46788 -19.18125 -18.18694 -17.13879 -16.91770 -16.31801 -15.23004 -15.06636 -14.37665 -14.20400 -13.89424 -13.87837 -13.29689 -13.02930 -12.93345 -12.71762 -12.48039 -12.19134 -11.96025 -11.77275 -11.37978 -11.01442 -10.61135 -9.62678 -8.18750 -6.26974 -0.51938 1.43365 1.47723 1.55973 1.84579 2.43323 3.10887 3.16952 3.29920 3.88793 4.07366 4.16515 4.33259 4.52623 4.73974 4.86177 4.89746 5.15453 5.27507 5.36092 5.71822 6.02328 6.44731 6.92451 7.37463 8.98536 Molecular weight = 205.06amu Principal moments of inertia in cm(-1) A = 0.046660 B = 0.013450 C = 0.011915 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 599.938238 B = 2081.257831 C = 2349.512647 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.650 4.650 2 S 2.616 3.384 3 O -0.997 6.997 4 O -1.004 7.004 5 N -1.036 6.036 6 C 0.130 3.870 7 C -0.155 4.155 8 C 0.245 3.755 9 H 0.074 0.926 10 C -0.540 4.540 11 H 0.046 0.954 12 C 0.008 3.992 13 N -0.955 5.955 14 Si 0.945 3.055 15 H -0.259 1.259 16 H -0.294 1.294 17 H -0.222 1.222 18 H 0.135 0.865 19 H 0.142 0.858 20 H 0.153 0.847 21 H 0.081 0.919 22 H 0.118 0.882 23 H 0.090 0.910 24 H 0.065 0.935 25 H 0.265 0.735 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.351 -11.759 -0.478 15.673 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.803 4.803 2 S 2.716 3.284 3 O -0.988 6.988 4 O -0.994 6.994 5 N -0.876 5.876 6 C 0.005 3.995 7 C -0.196 4.196 8 C 0.140 3.860 9 H 0.092 0.908 10 C -0.579 4.579 11 H 0.064 0.936 12 C -0.189 4.189 13 N -0.595 5.595 14 Si 0.767 3.233 15 H -0.184 1.184 16 H -0.220 1.220 17 H -0.145 1.145 18 H 0.154 0.846 19 H 0.161 0.839 20 H 0.171 0.829 21 H 0.099 0.901 22 H 0.136 0.864 23 H 0.109 0.891 24 H 0.084 0.916 25 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -9.724 -11.284 -1.305 14.953 hybrid contribution -0.239 0.516 0.631 0.849 sum -9.963 -10.768 -0.674 14.685 Atomic orbital electron populations 1.30372 1.24246 1.13222 1.12498 1.04352 0.79435 0.72484 0.72173 1.93593 1.79368 1.39932 1.85950 1.93474 1.80021 1.62735 1.63219 1.60144 1.84609 1.18361 1.24486 1.22860 0.99341 0.83614 0.93672 1.23788 0.99404 0.97066 0.99366 1.20451 0.94462 0.92075 0.79033 0.90822 1.21745 1.33551 1.08032 0.94570 0.93555 1.25945 0.94475 0.94597 1.03907 1.70121 1.39978 1.19769 1.29610 0.85778 0.81457 0.78563 0.77491 1.18358 1.22022 1.14469 0.84647 0.83924 0.82911 0.90093 0.86430 0.89134 0.91643 0.92598 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.65 -14.51 10.99 113.37 1.25 -13.26 15 2 S 2.62 96.23 6.57 -56.49 -0.37 95.86 15 3 O -1.00 -49.74 15.70 -127.65 -2.00 -51.74 15 4 O -1.00 -40.34 18.02 -127.65 -2.30 -42.64 15 5 N -1.04 -38.70 3.86 -512.30 -1.98 -40.68 15 6 C 0.13 3.65 8.91 86.48 0.77 4.43 15 7 C -0.16 -5.46 6.90 31.25 0.22 -5.24 15 8 C 0.25 10.48 3.33 44.35 0.15 10.62 15 9 H 0.07 2.81 6.82 -2.39 -0.02 2.80 15 10 C -0.54 -31.09 9.11 25.60 0.23 -30.86 15 11 H 0.05 3.16 6.20 -2.91 -0.02 3.14 15 12 C 0.01 0.44 5.47 84.66 0.46 0.91 15 13 N -0.95 -60.95 13.96 21.45 0.30 -60.65 15 14 Si 0.95 40.72 26.79 68.60 1.84 42.56 15 15 H -0.26 -10.52 7.11 99.48 0.71 -9.81 15 16 H -0.29 -12.90 7.11 99.48 0.71 -12.19 15 17 H -0.22 -8.02 6.34 99.48 0.63 -7.39 15 18 H 0.13 2.94 8.14 -2.39 -0.02 2.92 15 19 H 0.14 2.57 8.14 -2.39 -0.02 2.55 15 20 H 0.15 2.44 8.14 -2.39 -0.02 2.42 15 21 H 0.08 2.16 8.14 -2.39 -0.02 2.14 15 22 H 0.12 2.22 8.14 -2.39 -0.02 2.20 15 23 H 0.09 2.59 7.87 -2.39 -0.02 2.57 15 24 H 0.06 2.60 8.09 -2.39 -0.02 2.58 15 25 H 0.27 15.70 8.31 -92.70 -0.77 14.93 15 Total: -1.00 -81.50 228.17 -0.34 -81.84 By element: Atomic # 1 Polarization: 7.76 SS G_CDS: 1.10 Total: 8.86 kcal Atomic # 6 Polarization: -36.48 SS G_CDS: 3.08 Total: -33.40 kcal Atomic # 7 Polarization: -99.65 SS G_CDS: -1.68 Total: -101.33 kcal Atomic # 8 Polarization: -90.08 SS G_CDS: -4.30 Total: -94.38 kcal Atomic # 14 Polarization: 40.72 SS G_CDS: 1.84 Total: 42.56 kcal Atomic # 16 Polarization: 96.23 SS G_CDS: -0.37 Total: 95.86 kcal Total: -81.50 -0.34 -81.84 kcal The number of atoms in the molecule is 25 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259880103.mol2 25 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 22.208 kcal (2) G-P(sol) polarization free energy of solvation -81.499 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -59.291 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.336 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.835 kcal (6) G-S(sol) free energy of system = (1) + (5) -59.627 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.16 seconds