Wall clock time and date at job start Mon Mar 30 2020 02:02:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31012 * 1 3 3 Si 1.86798 * 119.99896 * 2 1 4 4 H 1.48496 * 109.47422 * 273.94804 * 3 2 1 5 5 H 1.48504 * 109.47187 * 33.95354 * 3 2 1 6 6 H 1.48501 * 109.46990 * 153.94867 * 3 2 1 7 7 C 1.39759 * 119.99927 * 180.02562 * 2 1 3 8 8 H 1.08007 * 120.00103 * 190.52707 * 7 2 1 9 9 C 1.40931 * 120.00165 * 10.52580 * 7 2 1 10 10 C 1.38721 * 127.30703 * 7.04211 * 9 7 2 11 11 O 1.34076 * 109.37440 * 180.02562 * 10 9 7 12 12 C 1.34560 * 111.55412 * 0.02562 * 11 10 9 13 13 C 1.38985 * 133.85325 * 180.28726 * 12 11 10 14 14 C 1.38602 * 118.91873 * 180.09930 * 13 12 11 15 15 O 1.35694 * 119.33904 * 179.80576 * 14 13 12 16 16 N 1.32536 * 121.32213 * 359.57700 * 14 13 12 17 17 C 1.31947 * 121.91318 * 0.22657 * 16 14 13 18 18 C 1.38676 * 120.24899 * 359.97438 * 17 16 14 19 19 H 0.97001 * 120.00252 * 359.97438 * 1 2 3 20 20 H 1.07997 * 125.30961 * 0.05134 * 10 9 7 21 21 H 1.08003 * 120.54369 * 359.97438 * 13 12 11 22 22 H 0.96702 * 113.99920 * 269.77409 * 15 14 13 23 23 H 1.07997 * 119.87183 * 179.97438 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3101 0.0000 0.0000 3 14 2.2441 1.6177 0.0000 4 1 2.4081 2.0947 -1.3967 5 1 1.4858 2.6271 0.7820 6 1 3.5809 1.4175 0.6149 7 6 2.0089 -1.2104 -0.0005 8 1 3.0753 -1.2183 0.1703 9 6 1.3220 -2.4205 -0.2240 10 6 -0.0067 -2.5779 -0.5901 11 8 -0.2847 -3.8845 -0.7048 12 6 0.7921 -4.6446 -0.4341 13 6 1.0237 -6.0149 -0.4170 14 6 2.2869 -6.4770 -0.0825 15 8 2.5214 -7.8133 -0.0593 16 7 3.2716 -5.6397 0.2107 17 6 3.1000 -4.3315 0.2037 18 6 1.8639 -3.7907 -0.1167 19 1 -0.4850 0.8400 0.0004 20 1 -0.7076 -1.7734 -0.7572 21 1 0.2318 -6.7085 -0.6584 22 1 2.3577 -8.2265 0.7995 23 1 3.9254 -3.6794 0.4484 RHF calculation, no. of doubly occupied orbitals= 36 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259885273.mol2 23 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:02:45 Heat of formation + Delta-G solvation = -38.270261 kcal Electronic energy + Delta-G solvation = -12480.775560 eV Core-core repulsion = 10066.497269 eV Total energy + Delta-G solvation = -2414.278291 eV No. of doubly occupied orbitals = 36 Molecular weight (most abundant/longest-lived isotopes) = 205.053 amu Computer time = 0.17 seconds Orbital eigenvalues (eV) -42.85817 -40.28555 -37.55489 -36.02933 -32.86435 -32.45013 -29.62331 -27.44126 -24.93284 -23.47822 -22.10643 -20.07634 -18.73993 -18.10780 -17.34881 -17.04626 -16.67673 -16.15598 -15.57517 -15.33036 -14.36579 -14.21454 -13.64472 -13.35564 -13.05058 -12.71232 -12.60621 -11.85221 -11.79576 -11.53493 -10.57267 -10.52492 -10.18024 -8.95690 -8.68570 -6.37950 -0.10150 0.38117 1.32386 1.43346 1.57292 1.92827 2.11375 2.24981 2.65304 2.95772 3.30411 3.78582 3.96049 4.09614 4.33018 4.61489 4.77207 5.05369 5.26927 5.36111 5.59909 5.80423 6.27159 6.50737 6.69281 6.82104 6.92523 7.01909 8.35048 Molecular weight = 205.05amu Principal moments of inertia in cm(-1) A = 0.062002 B = 0.009227 C = 0.008090 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 451.487261 B = 3033.771883 C = 3460.270245 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.840 5.840 2 C 0.019 3.981 3 Si 0.999 3.001 4 H -0.265 1.265 5 H -0.269 1.269 6 H -0.255 1.255 7 C -0.452 4.452 8 H 0.088 0.912 9 C 0.004 3.996 10 C -0.202 4.202 11 O -0.207 6.207 12 C 0.072 3.928 13 C -0.192 4.192 14 C 0.306 3.694 15 O -0.478 6.478 16 N -0.537 5.537 17 C 0.180 3.820 18 C -0.227 4.227 19 H 0.291 0.709 20 H 0.213 0.787 21 H 0.161 0.839 22 H 0.418 0.582 23 H 0.176 0.824 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.297 -4.108 1.387 4.907 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.469 5.469 2 C -0.192 4.192 3 Si 0.819 3.181 4 H -0.190 1.190 5 H -0.194 1.194 6 H -0.179 1.179 7 C -0.482 4.482 8 H 0.106 0.894 9 C 0.000 4.000 10 C -0.267 4.267 11 O -0.107 6.107 12 C 0.016 3.984 13 C -0.214 4.214 14 C 0.133 3.867 15 O -0.288 6.288 16 N -0.260 5.260 17 C 0.019 3.981 18 C -0.231 4.231 19 H 0.102 0.898 20 H 0.228 0.772 21 H 0.178 0.822 22 H 0.279 0.721 23 H 0.193 0.807 Dipole moment (debyes) X Y Z Total from point charges 2.728 -4.430 0.944 5.288 hybrid contribution -0.870 1.032 0.236 1.370 sum 1.858 -3.399 1.180 4.049 Atomic orbital electron populations 1.69535 1.08904 1.30626 1.37823 1.26771 0.95739 1.04635 0.92070 0.84910 0.78835 0.75124 0.79193 1.19009 1.19391 1.17897 1.19144 0.96203 0.89824 1.42995 0.89429 1.19048 0.92448 0.90545 0.97993 1.25107 1.00229 0.79141 1.22213 1.83578 1.34766 1.18967 1.73392 1.19959 0.86643 0.93219 0.98613 1.20794 0.98975 0.90571 1.11096 1.18570 0.86838 0.85060 0.96278 1.84717 1.90631 1.14181 1.39280 1.67329 1.34517 1.04023 1.20101 1.21993 0.94654 0.89442 0.91963 1.21372 0.96799 0.95800 1.09124 0.89817 0.77160 0.82159 0.72114 0.80723 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.84 -42.26 10.61 21.80 0.23 -42.03 14 2 C 0.02 0.93 5.45 85.18 0.46 1.40 14 3 Si 1.00 36.79 29.57 68.60 2.03 38.82 14 4 H -0.27 -9.54 7.11 99.48 0.71 -8.83 14 5 H -0.27 -9.49 7.11 99.48 0.71 -8.78 14 6 H -0.26 -9.05 7.11 99.48 0.71 -8.35 14 7 C -0.45 -23.43 9.42 23.30 0.22 -23.21 14 8 H 0.09 4.24 7.87 -2.91 -0.02 4.22 14 9 C 0.00 0.19 6.09 -19.99 -0.12 0.07 14 10 C -0.20 -10.92 11.04 67.94 0.75 -10.17 14 11 O -0.21 -10.54 10.51 -2.83 -0.03 -10.57 14 12 C 0.07 3.38 7.43 23.04 0.17 3.56 14 13 C -0.19 -7.35 10.06 22.54 0.23 -7.12 14 14 C 0.31 11.13 7.72 84.67 0.65 11.79 14 15 O -0.48 -13.59 13.55 -90.14 -1.22 -14.81 14 16 N -0.54 -21.33 10.38 -308.35 -3.20 -24.53 14 17 C 0.18 7.57 11.24 84.78 0.95 8.52 14 18 C -0.23 -11.02 6.40 -20.07 -0.13 -11.15 14 19 H 0.29 13.16 8.30 -92.71 -0.77 12.39 14 20 H 0.21 11.51 5.99 -2.91 -0.02 11.49 14 21 H 0.16 5.07 8.06 -2.91 -0.02 5.05 14 22 H 0.42 7.02 9.06 -74.06 -0.67 6.35 14 23 H 0.18 6.46 8.06 -2.91 -0.02 6.44 14 Total: -1.00 -61.07 218.12 1.59 -59.48 By element: Atomic # 1 Polarization: 19.38 SS G_CDS: 0.59 Total: 19.97 kcal Atomic # 6 Polarization: -29.52 SS G_CDS: 3.19 Total: -26.33 kcal Atomic # 7 Polarization: -63.59 SS G_CDS: -2.97 Total: -66.56 kcal Atomic # 8 Polarization: -24.13 SS G_CDS: -1.25 Total: -25.38 kcal Atomic # 14 Polarization: 36.79 SS G_CDS: 2.03 Total: 38.82 kcal Total: -61.07 1.59 -59.48 kcal The number of atoms in the molecule is 23 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259885273.mol2 23 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 21.213 kcal (2) G-P(sol) polarization free energy of solvation -61.072 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -39.859 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.589 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.483 kcal (6) G-S(sol) free energy of system = (1) + (5) -38.270 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.17 seconds