Wall clock time and date at job start Mon Mar 30 2020 02:21:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30907 * 1 3 3 Si 1.86805 * 119.99744 * 2 1 4 4 H 1.48498 * 109.47305 * 275.41203 * 3 2 1 5 5 H 1.48506 * 109.46834 * 35.41314 * 3 2 1 6 6 H 1.48496 * 109.46731 * 155.41070 * 3 2 1 7 7 C 1.39861 * 120.00159 * 180.02562 * 2 1 3 8 8 H 1.08002 * 120.00420 * 341.75595 * 7 2 1 9 9 C 1.41247 * 120.00275 * 161.76139 * 7 2 1 10 10 C 1.40402 * 120.09342 * 330.07499 * 9 7 2 11 11 C 1.38944 * 119.33300 * 179.97438 * 10 9 7 12 12 C 1.46702 * 133.85292 * 179.97438 * 11 10 9 13 13 C 1.34130 * 106.91872 * 180.02562 * 12 11 10 14 14 N 1.36975 * 110.01471 * 0.24440 * 13 12 11 15 15 H 0.96998 * 125.00280 * 179.76005 * 14 13 12 16 16 C 1.37411 * 109.99840 * 359.59111 * 14 13 12 17 17 C 1.39565 * 133.08627 * 180.02562 * 16 14 13 18 18 C 1.36289 * 120.36180 * 180.35597 * 17 16 14 19 19 F 1.35101 * 119.74724 * 179.97438 * 18 17 16 20 20 H 0.97001 * 120.00283 * 359.97438 * 1 2 3 21 21 H 1.07998 * 120.33348 * 359.95074 * 10 9 7 22 22 H 1.08003 * 126.53837 * 0.02562 * 12 11 10 23 23 H 1.08008 * 124.99255 * 179.97438 * 13 12 11 24 24 H 1.07998 * 119.82200 * 0.38422 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3091 0.0000 0.0000 3 14 2.2430 1.6178 0.0000 4 1 2.3762 2.1126 -1.3938 5 1 1.5022 2.6170 0.8113 6 1 3.5930 1.4099 0.5826 7 6 2.0084 -1.2112 -0.0005 8 1 1.5092 -2.1232 0.2919 9 6 3.3677 -1.2418 -0.3834 10 6 3.8580 -0.3120 -1.3141 11 6 5.1979 -0.3560 -1.6790 12 6 6.0285 0.4339 -2.5946 13 6 7.2675 -0.0766 -2.5366 14 7 7.2993 -1.1319 -1.6639 15 1 8.0859 -1.6615 -1.4597 16 6 6.0538 -1.3275 -1.1174 17 6 5.5512 -2.2457 -0.1943 18 6 4.2381 -2.2091 0.1688 19 9 3.7647 -3.1043 1.0630 20 1 -0.4850 0.8400 0.0004 21 1 3.2002 0.4298 -1.7423 22 1 5.7041 1.2675 -3.1999 23 1 8.1145 0.2879 -3.0990 24 1 6.2065 -2.9892 0.2349 RHF calculation, no. of doubly occupied orbitals= 36 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259893419.mol2 24 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:21:05 Heat of formation + Delta-G solvation = -17.390119 kcal Electronic energy + Delta-G solvation = -12620.173224 eV Core-core repulsion = 10219.173153 eV Total energy + Delta-G solvation = -2401.000071 eV No. of doubly occupied orbitals = 36 Molecular weight (most abundant/longest-lived isotopes) = 205.060 amu Computer time = 0.17 seconds Orbital eigenvalues (eV) -49.44669 -41.69052 -37.72366 -35.14745 -32.67546 -31.31452 -29.10692 -26.67425 -23.91886 -22.12537 -21.27142 -19.50438 -18.93951 -17.76331 -16.97953 -16.35902 -16.23129 -15.58098 -14.90741 -14.73141 -14.58610 -14.18021 -14.03767 -13.46068 -13.23359 -12.64177 -12.39230 -12.03769 -11.68736 -11.52542 -10.96548 -10.40041 -9.06516 -8.89333 -8.48730 -6.42645 0.31954 0.76358 1.27046 1.37167 1.49364 2.00690 2.14007 2.46307 2.56578 3.34234 3.85901 3.98509 4.21575 4.54473 4.56277 4.75986 4.90678 5.10317 5.22145 5.32490 5.52618 5.73929 5.88208 6.05732 6.15398 6.35784 6.65428 6.77201 7.01792 8.20235 Molecular weight = 205.06amu Principal moments of inertia in cm(-1) A = 0.034006 B = 0.014640 C = 0.010848 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 823.185289 B = 1912.082738 C = 2580.452491 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.852 5.852 2 C 0.050 3.950 3 Si 0.967 3.033 4 H -0.255 1.255 5 H -0.275 1.275 6 H -0.258 1.258 7 C -0.484 4.484 8 H 0.052 0.948 9 C 0.028 3.972 10 C -0.212 4.212 11 C -0.089 4.089 12 C -0.262 4.262 13 C 0.084 3.916 14 N -0.583 5.583 15 H 0.428 0.572 16 C 0.020 3.980 17 C -0.125 4.125 18 C 0.015 3.985 19 F -0.159 7.159 20 H 0.294 0.706 21 H 0.103 0.897 22 H 0.150 0.850 23 H 0.219 0.781 24 H 0.144 0.856 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.528 2.446 -4.176 15.313 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.479 5.479 2 C -0.164 4.164 3 Si 0.790 3.210 4 H -0.180 1.180 5 H -0.202 1.202 6 H -0.182 1.182 7 C -0.514 4.514 8 H 0.070 0.930 9 C 0.025 3.975 10 C -0.232 4.232 11 C -0.094 4.094 12 C -0.287 4.287 13 C -0.044 4.044 14 N -0.189 5.189 15 H 0.267 0.733 16 C -0.086 4.086 17 C -0.147 4.147 18 C -0.005 4.005 19 F -0.138 7.138 20 H 0.105 0.895 21 H 0.121 0.879 22 H 0.168 0.832 23 H 0.236 0.764 24 H 0.162 0.838 Dipole moment (debyes) X Y Z Total from point charges 14.332 2.406 -4.094 15.098 hybrid contribution -0.431 -0.095 0.513 0.676 sum 13.901 2.311 -3.581 14.540 Atomic orbital electron populations 1.69748 1.09042 1.31410 1.37698 1.26746 0.95375 1.03912 0.90395 0.85441 0.79290 0.76546 0.79690 1.17969 1.20176 1.18190 1.19189 0.94225 0.95828 1.42195 0.92967 1.17679 0.93036 0.93328 0.93471 1.20207 0.94912 1.04689 1.03421 1.19467 0.92938 0.97653 0.99323 1.21904 0.93624 1.05926 1.07278 1.22377 0.99101 0.88858 0.94073 1.41458 1.08346 1.30396 1.38695 0.73324 1.17583 0.87235 1.00933 1.02805 1.19379 0.93397 1.01180 1.00697 1.17442 0.92714 0.94679 0.95707 1.91308 1.89517 1.66531 1.66488 0.89546 0.87891 0.83196 0.76420 0.83835 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.85 -48.97 13.93 21.82 0.30 -48.67 14 2 C 0.05 2.81 5.40 85.22 0.46 3.27 14 3 Si 0.97 45.18 24.52 68.60 1.68 46.87 14 4 H -0.25 -11.16 6.71 99.48 0.67 -10.49 14 5 H -0.28 -11.92 7.11 99.48 0.71 -11.22 14 6 H -0.26 -12.46 6.86 99.48 0.68 -11.77 14 7 C -0.48 -29.17 9.23 23.40 0.22 -28.96 14 8 H 0.05 3.42 7.96 -2.91 -0.02 3.40 14 9 C 0.03 1.56 5.11 -21.24 -0.11 1.45 14 10 C -0.21 -10.65 7.22 22.97 0.17 -10.48 14 11 C -0.09 -3.85 6.36 -20.19 -0.13 -3.98 14 12 C -0.26 -8.57 11.09 23.55 0.26 -8.31 14 13 C 0.08 1.98 11.81 82.95 0.98 2.96 14 14 N -0.58 -15.39 6.06 -187.07 -1.13 -16.52 14 15 H 0.43 7.60 8.96 -92.71 -0.83 6.77 14 16 C 0.02 0.76 7.28 39.30 0.29 1.05 14 17 C -0.13 -5.12 9.96 22.14 0.22 -4.90 14 18 C 0.02 0.75 7.24 22.58 0.16 0.92 14 19 F -0.16 -8.09 16.72 44.97 0.75 -7.34 14 20 H 0.29 15.09 8.30 -92.71 -0.77 14.32 14 21 H 0.10 5.20 4.74 -2.91 -0.01 5.18 14 22 H 0.15 4.32 8.06 -2.91 -0.02 4.30 14 23 H 0.22 2.57 8.06 -2.91 -0.02 2.55 14 24 H 0.14 4.73 8.06 -2.91 -0.02 4.71 14 Total: -1.00 -69.37 216.72 4.47 -64.90 By element: Atomic # 1 Polarization: 7.40 SS G_CDS: 0.35 Total: 7.75 kcal Atomic # 6 Polarization: -49.50 SS G_CDS: 2.52 Total: -46.98 kcal Atomic # 7 Polarization: -64.36 SS G_CDS: -0.83 Total: -65.19 kcal Atomic # 9 Polarization: -8.09 SS G_CDS: 0.75 Total: -7.34 kcal Atomic # 14 Polarization: 45.18 SS G_CDS: 1.68 Total: 46.87 kcal Total: -69.37 4.47 -64.90 kcal The number of atoms in the molecule is 24 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259893419.mol2 24 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 47.506 kcal (2) G-P(sol) polarization free energy of solvation -69.366 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -21.860 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.470 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.896 kcal (6) G-S(sol) free energy of system = (1) + (5) -17.390 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.17 seconds