Wall clock time and date at job start Mon Mar 30 2020 02:04:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30679 * 1 3 3 Si 1.86796 * 120.00044 * 2 1 4 4 H 1.48501 * 109.47231 * 270.00038 * 3 2 1 5 5 H 1.48500 * 109.47102 * 29.99859 * 3 2 1 6 6 H 1.48491 * 109.47446 * 150.00036 * 3 2 1 7 7 C 1.40143 * 119.99803 * 180.02562 * 2 1 3 8 8 H 1.07999 * 119.99546 * 179.97438 * 7 2 1 9 9 C 1.41155 * 120.00277 * 359.97438 * 7 2 1 10 10 N 1.31925 * 126.53909 * 0.02562 * 9 7 2 11 11 O 1.41317 * 109.35617 * 179.97438 * 10 9 7 12 12 C 1.34965 * 109.70306 * 0.02562 * 11 10 9 13 13 C 1.40074 * 107.55894 * 359.97438 * 12 11 10 14 14 C 1.39297 * 120.04487 * 180.02562 * 13 12 11 15 15 C 1.37883 * 119.83911 * 0.02562 * 14 13 12 16 16 C 1.38587 * 120.34142 * 359.97174 * 15 14 13 17 17 C 1.38338 * 120.47845 * 0.28788 * 16 15 14 18 18 O 1.35933 * 120.07633 * 179.74627 * 17 16 15 19 19 H 0.96993 * 120.00534 * 0.02562 * 1 2 3 20 20 H 1.08002 * 120.08328 * 179.97438 * 14 13 12 21 21 H 1.07997 * 119.82650 * 180.02562 * 15 14 13 22 22 H 1.08002 * 119.75682 * 179.97438 * 16 15 14 23 23 H 0.96699 * 114.00479 * 89.99494 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3068 0.0000 0.0000 3 14 2.2408 1.6177 0.0000 4 1 2.4883 2.0464 -1.4001 5 1 1.4382 2.6526 0.7000 6 1 3.5383 1.4402 0.7000 7 6 2.0075 -1.2137 -0.0005 8 1 3.0875 -1.2136 -0.0010 9 6 1.3017 -2.4361 -0.0005 10 7 -0.0090 -2.5864 -0.0005 11 8 -0.3224 -3.9644 -0.0011 12 6 0.8156 -4.6899 -0.0010 13 6 1.8899 -3.7910 -0.0008 14 6 3.1985 -4.2682 -0.0012 15 6 3.4334 -5.6269 -0.0021 16 6 2.3740 -6.5204 -0.0022 17 6 1.0690 -6.0615 -0.0073 18 8 0.0361 -6.9452 -0.0125 19 1 -0.4850 0.8399 -0.0004 20 1 4.0273 -3.5757 -0.0015 21 1 4.4481 -5.9966 -0.0020 22 1 2.5688 -7.5827 -0.0034 23 1 -0.2665 -7.2019 0.8693 RHF calculation, no. of doubly occupied orbitals= 36 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259970573.mol2 23 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:04:45 Heat of formation + Delta-G solvation = 1.685732 kcal Electronic energy + Delta-G solvation = -12536.956498 eV Core-core repulsion = 10124.410828 eV Total energy + Delta-G solvation = -2412.545669 eV No. of doubly occupied orbitals = 36 Molecular weight (most abundant/longest-lived isotopes) = 205.053 amu Computer time = 0.15 seconds Orbital eigenvalues (eV) -40.14933 -37.56154 -35.64647 -34.13350 -31.33651 -28.84398 -28.56984 -26.37280 -22.19209 -21.74188 -20.42243 -17.94505 -17.14421 -15.77613 -15.51140 -15.12894 -14.82848 -14.35407 -13.63911 -13.13965 -12.79500 -11.97691 -11.53683 -11.44405 -11.20746 -11.00912 -10.74858 -10.43326 -10.12114 -10.09069 -9.22092 -8.92328 -7.85334 -7.55077 -6.84105 -4.92991 1.59711 2.04659 2.91122 3.00833 3.05060 3.68929 3.81922 4.24844 4.27667 4.72065 5.17026 5.40276 5.67464 5.75530 5.90917 5.93407 6.49814 6.64984 6.81615 6.89333 7.01700 7.07199 7.38979 7.91458 8.14288 8.34458 8.57443 9.40751 10.11770 Molecular weight = 205.05amu Principal moments of inertia in cm(-1) A = 0.056281 B = 0.009959 C = 0.008494 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 497.387648 B = 2810.785656 C = 3295.822269 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.745 5.745 2 C 0.065 3.935 3 Si 0.924 3.076 4 H -0.267 1.267 5 H -0.274 1.274 6 H -0.259 1.259 7 C -0.419 4.419 8 H 0.094 0.906 9 C 0.211 3.789 10 N -0.355 5.355 11 O -0.154 6.154 12 C 0.067 3.933 13 C -0.164 4.164 14 C -0.053 4.053 15 C -0.169 4.169 16 C -0.108 4.108 17 C 0.062 3.938 18 O -0.493 6.493 19 H 0.285 0.715 20 H 0.125 0.875 21 H 0.123 0.877 22 H 0.127 0.873 23 H 0.377 0.623 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.162 -5.080 1.613 8.147 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.371 5.371 2 C -0.159 4.159 3 Si 0.748 3.252 4 H -0.192 1.192 5 H -0.199 1.199 6 H -0.183 1.183 7 C -0.458 4.458 8 H 0.112 0.888 9 C 0.055 3.945 10 N -0.130 5.130 11 O -0.147 6.147 12 C 0.010 3.990 13 C -0.168 4.168 14 C -0.073 4.073 15 C -0.188 4.188 16 C -0.128 4.128 17 C 0.016 3.984 18 O -0.301 6.301 19 H 0.096 0.904 20 H 0.143 0.857 21 H 0.141 0.859 22 H 0.145 0.855 23 H 0.231 0.769 Dipole moment (debyes) X Y Z Total from point charges 4.744 -4.575 0.998 6.665 hybrid contribution 1.019 0.362 0.501 1.192 sum 5.763 -4.213 1.498 7.294 Atomic orbital electron populations 1.69807 1.07447 1.29589 1.30249 1.26050 0.95047 1.01613 0.93240 0.86035 0.80117 0.79672 0.79394 1.19162 1.19930 1.18299 1.18857 0.94387 0.87373 1.45213 0.88827 1.21122 0.90530 0.90668 0.92197 1.81395 1.12119 0.79403 1.40078 1.89111 1.26033 1.18607 1.80937 1.20852 0.89536 0.92707 0.95867 1.21263 0.93936 0.93333 1.08252 1.20655 0.95250 0.95003 0.96346 1.20637 0.98210 0.92563 1.07353 1.20982 0.90724 0.99746 1.01337 1.17340 0.87277 0.83775 1.10028 1.84873 1.50292 1.62049 1.32868 0.90419 0.85742 0.85915 0.85477 0.76885 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.75 -20.23 11.97 55.56 0.66 -19.56 14 2 C 0.06 1.63 5.50 -17.33 -0.10 1.54 14 3 Si 0.92 18.15 29.56 -169.99 -5.02 13.13 14 4 H -0.27 -5.15 7.11 56.52 0.40 -4.75 14 5 H -0.27 -5.29 7.11 56.52 0.40 -4.89 14 6 H -0.26 -4.90 7.11 56.52 0.40 -4.49 14 7 C -0.42 -10.98 9.44 -37.76 -0.36 -11.34 14 8 H 0.09 2.20 7.85 -52.49 -0.41 1.78 14 9 C 0.21 5.89 6.95 -82.86 -0.58 5.32 14 10 N -0.35 -10.70 11.13 33.37 0.37 -10.33 14 11 O -0.15 -4.35 12.05 7.29 0.09 -4.27 14 12 C 0.07 1.66 7.39 -38.43 -0.28 1.38 14 13 C -0.16 -4.02 6.30 -104.95 -0.66 -4.68 14 14 C -0.05 -1.04 10.09 -39.32 -0.40 -1.44 14 15 C -0.17 -2.82 10.03 -39.58 -0.40 -3.21 14 16 C -0.11 -1.84 9.96 -39.42 -0.39 -2.24 14 17 C 0.06 1.26 6.72 -39.08 -0.26 1.00 14 18 O -0.49 -9.00 13.51 -19.53 -0.26 -9.26 14 19 H 0.28 6.93 8.29 -40.82 -0.34 6.59 14 20 H 0.12 2.16 8.06 -52.49 -0.42 1.74 14 21 H 0.12 1.58 8.06 -52.49 -0.42 1.16 14 22 H 0.13 1.72 8.06 -52.49 -0.42 1.30 14 23 H 0.38 4.94 9.06 45.56 0.41 5.35 14 LS Contribution 221.28 15.07 3.33 3.33 Total: -1.00 -32.18 221.28 -4.65 -36.83 By element: Atomic # 1 Polarization: 4.19 SS G_CDS: -0.40 Total: 3.79 kcal Atomic # 6 Polarization: -10.25 SS G_CDS: -3.42 Total: -13.67 kcal Atomic # 7 Polarization: -30.92 SS G_CDS: 1.04 Total: -29.89 kcal Atomic # 8 Polarization: -13.35 SS G_CDS: -0.18 Total: -13.53 kcal Atomic # 14 Polarization: 18.15 SS G_CDS: -5.02 Total: 13.13 kcal Total LS contribution 3.33 Total: 3.33 kcal Total: -32.18 -4.65 -36.83 kcal The number of atoms in the molecule is 23 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259970573.mol2 23 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 38.514 kcal (2) G-P(sol) polarization free energy of solvation -32.176 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 6.338 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.652 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.829 kcal (6) G-S(sol) free energy of system = (1) + (5) 1.686 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.15 seconds