Wall clock time and date at job start Mon Mar 30 2020 02:21:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.37575 * 119.95059 * 2 1 4 4 C 1.38702 * 120.38994 * 180.02562 * 3 2 1 5 5 F 1.35096 * 119.86310 * 180.02562 * 4 3 2 6 6 C 1.40297 * 120.27390 * 0.29559 * 4 3 2 7 7 C 1.43199 * 120.05222 * 179.70178 * 6 4 3 8 8 N 4.81467 * 137.46944 * 0.31725 * 3 1 2 9 9 C 1.39023 * 119.89353 * 359.45041 * 6 4 3 10 10 C 1.40495 * 119.61855 * 0.52771 * 9 6 4 11 11 C 1.41366 * 120.13797 * 179.76705 * 10 9 6 12 12 H 1.08007 * 119.99918 * 149.20004 * 11 10 9 13 13 C 1.39900 * 120.00049 * 329.19633 * 11 10 9 14 14 N 1.30863 * 120.00114 * 162.47106 * 13 11 10 15 15 Si 1.86797 * 119.99700 * 342.46860 * 13 11 10 16 16 H 1.48506 * 109.46960 * 95.37028 * 15 13 11 17 17 H 1.48500 * 109.46844 * 215.36415 * 15 13 11 18 18 H 1.48492 * 109.47533 * 335.36828 * 15 13 11 19 19 H 1.09000 * 109.47694 * 89.99724 * 1 2 3 20 20 H 1.09003 * 109.47052 * 209.99895 * 1 2 3 21 21 H 1.08997 * 109.47065 * 329.99497 * 1 2 3 22 22 H 1.08004 * 119.80408 * 0.02814 * 3 2 1 23 23 H 1.07998 * 120.19158 * 180.29037 * 9 6 4 24 24 H 0.96999 * 119.99988 * 180.02562 * 14 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1939 1.1920 0.0000 4 6 3.5809 1.2027 -0.0005 5 9 4.2445 2.3794 0.0000 6 6 4.2974 -0.0035 -0.0073 7 6 5.7293 0.0130 -0.0143 8 7 6.8652 0.0262 -0.0180 9 6 3.6151 -1.2148 -0.0020 10 6 2.2102 -1.2204 -0.0011 11 6 1.5053 -2.4457 -0.0006 12 1 0.5399 -2.5132 0.4790 13 6 2.0581 -3.5710 -0.6215 14 7 1.5996 -4.7642 -0.3415 15 14 3.4507 -3.3700 -1.8501 16 1 4.7515 -3.5608 -1.1595 17 1 3.3096 -4.3817 -2.9280 18 1 3.3983 -2.0081 -2.4395 19 1 -0.3634 0.0000 -1.0276 20 1 -0.3633 -0.8900 0.5138 21 1 -0.3633 0.8899 0.5139 22 1 1.6499 2.1250 0.0005 23 1 4.1619 -2.1461 -0.0025 24 1 1.9831 -5.5444 -0.7717 RHF calculation, no. of doubly occupied orbitals= 36 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259971013.mol2 24 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:21:43 Heat of formation + Delta-G solvation = -24.969274 kcal Electronic energy + Delta-G solvation = -12425.733388 eV Core-core repulsion = 10024.404660 eV Total energy + Delta-G solvation = -2401.328728 eV No. of doubly occupied orbitals = 36 Molecular weight (most abundant/longest-lived isotopes) = 205.060 amu Computer time = 0.18 seconds Orbital eigenvalues (eV) -49.60755 -40.01771 -37.69259 -35.50586 -33.61216 -32.18435 -28.64349 -26.70965 -23.68024 -22.86675 -20.17624 -18.92673 -17.47239 -17.33802 -16.69696 -16.44323 -15.29522 -15.05654 -14.79161 -14.62095 -14.32645 -14.14308 -14.00077 -13.76180 -13.17412 -12.77663 -12.68206 -12.43937 -11.89535 -11.88718 -11.57745 -11.09805 -9.64926 -9.45978 -8.93392 -6.49590 -0.11336 0.53694 1.24174 1.33383 1.44906 1.48400 1.89663 2.06191 2.53842 2.85804 3.29669 3.51127 4.02982 4.37139 4.58723 4.69706 4.90872 5.02379 5.12311 5.21976 5.30206 5.48219 5.53292 5.80214 6.05078 6.25144 6.35752 6.55498 6.74953 8.12316 Molecular weight = 205.06amu Principal moments of inertia in cm(-1) A = 0.028878 B = 0.015268 C = 0.010669 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 969.368777 B = 1833.404970 C = 2623.785446 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.094 4.094 2 C -0.116 4.116 3 C -0.104 4.104 4 C 0.020 3.980 5 F -0.154 7.154 6 C -0.040 4.040 7 C 0.277 3.723 8 N -0.461 5.461 9 C -0.180 4.180 10 C 0.068 3.932 11 C -0.452 4.452 12 H 0.090 0.910 13 C 0.061 3.939 14 N -0.831 5.831 15 Si 0.930 3.070 16 H -0.272 1.272 17 H -0.273 1.273 18 H -0.243 1.243 19 H 0.072 0.928 20 H 0.059 0.941 21 H 0.081 0.919 22 H 0.159 0.841 23 H 0.110 0.890 24 H 0.295 0.705 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.714 6.151 -1.423 6.872 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.118 4.118 3 C -0.123 4.123 4 C -0.003 4.003 5 F -0.133 7.133 6 C -0.045 4.045 7 C -0.036 4.036 8 N -0.137 5.137 9 C -0.202 4.202 10 C 0.065 3.935 11 C -0.481 4.481 12 H 0.108 0.892 13 C -0.157 4.157 14 N -0.456 5.456 15 Si 0.754 3.246 16 H -0.198 1.198 17 H -0.200 1.200 18 H -0.166 1.166 19 H 0.091 0.909 20 H 0.078 0.922 21 H 0.099 0.901 22 H 0.176 0.824 23 H 0.127 0.873 24 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges -0.990 5.909 -1.442 6.162 hybrid contribution 0.517 -0.368 -0.386 0.743 sum -0.473 5.541 -1.828 5.854 Atomic orbital electron populations 1.20618 0.89282 1.02652 1.02473 1.20250 0.97336 0.90893 1.03338 1.20768 0.90282 0.99630 1.01596 1.17304 0.90485 0.78379 1.14127 1.91380 1.81376 1.45527 1.95022 1.15836 0.83159 0.94551 1.10937 1.26006 0.93035 0.92234 0.92365 1.81078 1.12556 1.08974 1.11136 1.20975 0.94770 0.94393 1.10093 1.17642 0.90390 0.94020 0.91462 1.19506 1.05735 0.91811 1.31018 0.89249 1.26549 0.97785 0.94128 0.97191 1.69690 1.39593 0.99927 1.36354 0.85994 0.78770 0.80415 0.79407 1.19809 1.19955 1.16619 0.90904 0.92184 0.90056 0.82363 0.87270 0.89388 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -2.77 9.61 71.24 0.68 -2.08 14 2 C -0.12 -4.20 5.94 -19.38 -0.12 -4.31 14 3 C -0.10 -3.43 9.63 22.22 0.21 -3.22 14 4 C 0.02 0.73 7.30 22.88 0.17 0.90 14 5 F -0.15 -5.65 16.79 44.97 0.76 -4.89 14 6 C -0.04 -1.65 5.73 -21.34 -0.12 -1.77 14 7 C 0.28 11.51 14.95 88.33 1.32 12.83 14 8 N -0.46 -19.59 18.54 19.00 0.35 -19.24 14 9 C -0.18 -7.76 6.85 23.01 0.16 -7.60 14 10 C 0.07 2.91 5.08 -21.32 -0.11 2.80 14 11 C -0.45 -21.15 8.89 23.44 0.21 -20.94 14 12 H 0.09 4.33 6.53 -2.91 -0.02 4.31 14 13 C 0.06 2.88 5.41 85.24 0.46 3.34 14 14 N -0.83 -40.70 13.93 21.82 0.30 -40.40 14 15 Si 0.93 38.82 24.52 68.60 1.68 40.50 14 16 H -0.27 -11.44 6.72 99.48 0.67 -10.77 14 17 H -0.27 -10.85 7.11 99.48 0.71 -10.14 14 18 H -0.24 -10.15 6.85 99.48 0.68 -9.47 14 19 H 0.07 2.00 8.14 -2.39 -0.02 1.98 14 20 H 0.06 1.93 6.29 -2.39 -0.02 1.92 14 21 H 0.08 1.87 8.08 -2.39 -0.02 1.85 14 22 H 0.16 4.03 8.06 -2.91 -0.02 4.01 14 23 H 0.11 4.84 4.81 -2.91 -0.01 4.82 14 24 H 0.30 13.20 8.30 -92.71 -0.77 12.43 14 Total: -1.00 -50.29 224.07 7.14 -43.15 By element: Atomic # 1 Polarization: -0.24 SS G_CDS: 1.18 Total: 0.93 kcal Atomic # 6 Polarization: -22.93 SS G_CDS: 2.87 Total: -20.06 kcal Atomic # 7 Polarization: -60.29 SS G_CDS: 0.66 Total: -59.64 kcal Atomic # 9 Polarization: -5.65 SS G_CDS: 0.76 Total: -4.89 kcal Atomic # 14 Polarization: 38.82 SS G_CDS: 1.68 Total: 40.50 kcal Total: -50.29 7.14 -43.15 kcal The number of atoms in the molecule is 24 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259971013.mol2 24 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 18.185 kcal (2) G-P(sol) polarization free energy of solvation -50.294 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -32.109 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.139 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.155 kcal (6) G-S(sol) free energy of system = (1) + (5) -24.969 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.18 seconds