Wall clock time and date at job start Mon Mar 30 2020 02:04:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31565 * 1 3 3 Si 1.86803 * 119.99784 * 2 1 4 4 H 1.48499 * 109.46937 * 269.99779 * 3 2 1 5 5 H 1.48506 * 109.47261 * 29.99824 * 3 2 1 6 6 H 1.48495 * 109.47305 * 149.99684 * 3 2 1 7 7 C 1.38639 * 120.00326 * 179.97438 * 2 1 3 8 8 H 1.07999 * 120.00121 * 0.02562 * 7 2 1 9 9 O 1.34823 * 120.00028 * 179.97438 * 7 2 1 10 10 C 1.35806 * 117.00012 * 185.05800 * 9 7 2 11 11 C 1.39384 * 119.88834 * 174.72419 * 10 9 7 12 12 C 1.37652 * 120.53763 * 180.28045 * 11 10 9 13 13 C 1.39025 * 120.03832 * 359.72433 * 12 11 10 14 14 O 1.34914 * 133.28361 * 179.97438 * 13 12 11 15 15 N 1.41341 * 109.33503 * 180.02562 * 14 13 12 16 16 C 1.29729 * 109.75387 * 0.02562 * 15 14 13 17 17 C 1.40454 * 119.64469 * 359.97438 * 13 12 11 18 18 C 1.38243 * 119.88961 * 354.45040 * 10 9 7 19 19 H 0.96997 * 120.00568 * 0.02562 * 1 2 3 20 20 H 1.07995 * 119.73102 * 0.02562 * 11 10 9 21 21 H 1.08001 * 119.98445 * 179.70115 * 12 11 10 22 22 H 1.07997 * 126.29467 * 180.02562 * 16 15 14 23 23 H 1.08001 * 120.18752 * 359.97438 * 18 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3156 0.0000 0.0000 3 14 2.2496 1.6178 0.0000 4 1 2.4971 2.0464 -1.4001 5 1 1.4470 2.6528 0.7000 6 1 3.5471 1.4404 0.7001 7 6 2.0089 -1.2006 0.0005 8 1 1.4690 -2.1359 0.0005 9 8 3.3571 -1.2005 0.0000 10 6 3.9737 -2.4059 -0.1061 11 6 5.3612 -2.4684 -0.2237 12 6 5.9995 -3.6826 -0.3378 13 6 5.2609 -4.8605 -0.3308 14 8 5.5972 -6.1637 -0.4235 15 7 4.4274 -6.9545 -0.3606 16 6 3.3874 -6.1896 -0.2337 17 6 3.8631 -4.8032 -0.2062 18 6 3.2236 -3.5671 -0.0914 19 1 -0.4851 0.8400 -0.0004 20 1 5.9398 -1.5565 -0.2294 21 1 7.0746 -3.7204 -0.4333 22 1 2.3600 -6.5144 -0.1602 23 1 2.1490 -3.5182 0.0046 RHF calculation, no. of doubly occupied orbitals= 36 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259980927.mol2 23 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:04:00 Heat of formation + Delta-G solvation = 40.140713 kcal Electronic energy + Delta-G solvation = -12368.540298 eV Core-core repulsion = 9957.662162 eV Total energy + Delta-G solvation = -2410.878136 eV No. of doubly occupied orbitals = 36 Molecular weight (most abundant/longest-lived isotopes) = 205.053 amu Computer time = 0.16 seconds Orbital eigenvalues (eV) -41.16359 -38.76687 -35.78252 -33.29745 -32.47284 -29.94485 -28.70652 -25.45196 -22.90715 -21.67647 -21.56044 -18.26277 -17.66222 -16.85268 -15.70660 -15.45419 -14.33561 -14.08266 -13.88855 -13.74810 -13.31902 -12.71162 -12.43050 -12.00793 -11.30082 -11.20547 -10.94544 -10.92067 -10.74437 -10.33911 -9.60290 -8.96926 -8.49302 -7.40510 -6.53220 -4.20927 1.03852 1.93755 2.48742 2.98122 3.14834 3.18953 3.32061 4.13154 4.14121 4.54664 4.66670 4.80424 4.96439 5.12748 5.62738 5.81201 5.87411 6.01556 6.38002 6.52970 6.67858 6.76852 7.10373 7.56941 7.65681 7.87781 8.80913 9.38940 10.53900 Molecular weight = 205.05amu Principal moments of inertia in cm(-1) A = 0.061960 B = 0.008774 C = 0.007711 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 451.795686 B = 3190.459833 C = 3630.310681 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.875 5.875 2 C 0.066 3.934 3 Si 0.906 3.094 4 H -0.272 1.272 5 H -0.281 1.281 6 H -0.259 1.259 7 C -0.393 4.393 8 H 0.107 0.893 9 O -0.211 6.211 10 C 0.131 3.869 11 C -0.115 4.115 12 C -0.088 4.088 13 C 0.003 3.997 14 O -0.104 6.104 15 N -0.305 5.305 16 C 0.102 3.898 17 C -0.151 4.151 18 C -0.161 4.161 19 H 0.281 0.719 20 H 0.137 0.863 21 H 0.133 0.867 22 H 0.204 0.796 23 H 0.146 0.854 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.450 -4.353 -0.252 7.786 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.512 5.512 2 C -0.139 4.139 3 Si 0.732 3.268 4 H -0.198 1.198 5 H -0.207 1.207 6 H -0.183 1.183 7 C -0.469 4.469 8 H 0.124 0.876 9 O -0.117 6.117 10 C 0.079 3.921 11 C -0.136 4.136 12 C -0.108 4.108 13 C -0.050 4.050 14 O -0.117 6.117 15 N -0.046 5.046 16 C -0.099 4.099 17 C -0.155 4.155 18 C -0.183 4.183 19 H 0.091 0.909 20 H 0.155 0.845 21 H 0.151 0.849 22 H 0.220 0.780 23 H 0.163 0.837 Dipole moment (debyes) X Y Z Total from point charges 6.876 -5.224 -0.335 8.642 hybrid contribution -0.372 1.356 0.059 1.407 sum 6.504 -3.869 -0.276 7.572 Atomic orbital electron populations 1.69639 1.05611 1.28744 1.47211 1.24468 0.95032 0.98944 0.95417 0.86168 0.80339 0.81281 0.79051 1.19785 1.20678 1.18269 1.20741 0.76712 0.96707 1.52702 0.87564 1.83606 1.22737 1.24721 1.80614 1.18801 0.91455 0.85642 0.96198 1.20270 0.92046 0.97317 1.03951 1.19510 0.99129 0.87417 1.04704 1.19946 0.93749 0.85984 1.05297 1.89008 1.26864 1.13462 1.82364 1.79632 0.91838 1.14376 1.18799 1.25995 0.99670 0.90813 0.93374 1.20572 0.92162 0.93445 1.09271 1.20721 1.01481 0.89219 1.06835 0.90856 0.84496 0.84940 0.77955 0.83693 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -24.18 13.96 55.48 0.77 -23.40 14 2 C 0.07 1.75 5.49 -17.52 -0.10 1.65 14 3 Si 0.91 20.54 28.62 -169.99 -4.86 15.68 14 4 H -0.27 -6.08 7.11 56.52 0.40 -5.68 14 5 H -0.28 -6.18 7.11 56.52 0.40 -5.78 14 6 H -0.26 -5.83 7.11 56.52 0.40 -5.43 14 7 C -0.39 -10.42 9.94 30.88 0.31 -10.11 14 8 H 0.11 2.85 5.43 -52.49 -0.28 2.57 14 9 O -0.21 -5.17 8.58 -0.11 0.00 -5.17 14 10 C 0.13 2.78 6.64 -39.15 -0.26 2.52 14 11 C -0.12 -2.05 9.96 -39.37 -0.39 -2.44 14 12 C -0.09 -1.44 10.05 -39.50 -0.40 -1.84 14 13 C 0.00 0.06 7.48 -38.46 -0.29 -0.23 14 14 O -0.10 -1.93 12.07 7.42 0.09 -1.84 14 15 N -0.31 -5.32 12.81 31.94 0.41 -4.91 14 16 C 0.10 1.60 12.32 -15.07 -0.19 1.41 14 17 C -0.15 -2.78 6.34 -105.17 -0.67 -3.45 14 18 C -0.16 -3.26 9.21 -39.05 -0.36 -3.62 14 19 H 0.28 7.18 8.31 -40.82 -0.34 6.84 14 20 H 0.14 2.10 8.06 -52.49 -0.42 1.68 14 21 H 0.13 1.73 8.06 -52.49 -0.42 1.30 14 22 H 0.20 2.26 8.06 -52.49 -0.42 1.84 14 23 H 0.15 2.99 5.62 -52.49 -0.29 2.70 14 LS Contribution 218.34 15.07 3.29 3.29 Total: -1.00 -28.81 218.34 -3.62 -32.43 By element: Atomic # 1 Polarization: 1.01 SS G_CDS: -0.98 Total: 0.03 kcal Atomic # 6 Polarization: -13.76 SS G_CDS: -2.34 Total: -16.10 kcal Atomic # 7 Polarization: -29.49 SS G_CDS: 1.18 Total: -28.31 kcal Atomic # 8 Polarization: -7.10 SS G_CDS: 0.09 Total: -7.01 kcal Atomic # 14 Polarization: 20.54 SS G_CDS: -4.86 Total: 15.68 kcal Total LS contribution 3.29 Total: 3.29 kcal Total: -28.81 -3.62 -32.43 kcal The number of atoms in the molecule is 23 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259980927.mol2 23 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 72.570 kcal (2) G-P(sol) polarization free energy of solvation -28.806 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 43.764 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.623 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -32.429 kcal (6) G-S(sol) free energy of system = (1) + (5) 40.141 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.17 seconds