Wall clock time and date at job start Mon Mar 30 2020 02:10:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31079 * 1 3 3 Si 1.86799 * 119.99873 * 2 1 4 4 H 1.48496 * 109.46945 * 239.99829 * 3 2 1 5 5 H 1.48497 * 109.47272 * 0.02562 * 3 2 1 6 6 H 1.48507 * 109.47008 * 120.00258 * 3 2 1 7 7 C 1.39659 * 119.99598 * 179.97438 * 2 1 3 8 8 H 1.08008 * 119.99304 * 197.43086 * 7 2 1 9 9 C 1.41104 * 120.00574 * 17.43306 * 7 2 1 10 10 C 1.41723 * 120.76095 * 24.09942 * 9 7 2 11 11 N 1.30886 * 120.14533 * 180.30510 * 10 9 7 12 12 C 1.34300 * 121.73598 * 359.72318 * 11 10 9 13 13 N 1.32527 * 131.40451 * 180.02562 * 12 11 10 14 14 C 1.33691 * 109.41128 * 180.02562 * 13 12 11 15 15 C 1.34880 * 108.65916 * 359.97438 * 14 13 12 16 16 N 1.37117 * 120.83846 * 359.97438 * 12 11 10 17 17 C 1.36383 * 120.31725 * 359.97438 * 16 12 11 18 18 O 1.34760 * 120.75652 * 180.02562 * 17 16 12 19 19 H 0.96998 * 119.99815 * 359.97438 * 1 2 3 20 20 H 1.07995 * 119.92599 * 0.02562 * 10 9 7 21 21 H 1.08002 * 125.67311 * 180.02562 * 14 13 12 22 22 H 1.07996 * 126.50962 * 180.02562 * 15 14 13 23 23 H 0.96697 * 116.99749 * 90.00011 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3108 0.0000 0.0000 3 14 2.2448 1.6178 0.0000 4 1 3.0985 1.6964 -1.2125 5 1 1.2798 2.7465 0.0006 6 1 3.0986 1.6964 1.2125 7 6 2.0090 -1.2095 0.0005 8 1 3.0519 -1.2308 0.2808 9 6 1.3521 -2.4036 -0.3650 10 6 0.2031 -2.3743 -1.1941 11 7 -0.4004 -3.4889 -1.5208 12 6 0.0423 -4.6830 -1.0946 13 7 -0.4100 -5.9110 -1.3037 14 6 0.3715 -6.7873 -0.6644 15 6 1.3498 -6.1098 -0.0294 16 7 1.1524 -4.7767 -0.2953 17 6 1.8273 -3.6526 0.0802 18 8 2.9196 -3.7345 0.8651 19 1 -0.4850 0.8400 0.0004 20 1 -0.1781 -1.4299 -1.5533 21 1 0.2417 -7.8595 -0.6582 22 1 2.1391 -6.5348 0.5729 23 1 3.7735 -3.8264 0.4208 RHF calculation, no. of doubly occupied orbitals= 36 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260001355.mol2 23 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:10:46 Heat of formation + Delta-G solvation = 50.547131 kcal Electronic energy + Delta-G solvation = -12781.071230 eV Core-core repulsion = 10402.937101 eV Total energy + Delta-G solvation = -2378.134129 eV No. of doubly occupied orbitals = 36 Molecular weight (most abundant/longest-lived isotopes) = 205.059 amu Computer time = 0.16 seconds Orbital eigenvalues (eV) -41.52083 -37.56751 -36.15683 -34.10995 -32.19921 -30.02978 -27.95714 -25.51112 -22.99831 -21.82132 -20.54668 -18.15750 -17.91790 -16.74300 -15.91905 -15.27422 -15.00802 -14.07199 -13.52523 -13.13409 -13.04155 -12.50527 -12.07663 -11.59065 -11.39251 -11.02016 -10.79903 -10.36484 -10.15795 -9.63745 -9.30359 -8.75531 -7.96969 -7.38157 -6.96918 -4.81162 1.78140 2.34336 2.82874 2.85944 2.89093 3.53959 3.66013 3.72770 4.30285 4.80125 4.90753 5.19130 5.70030 5.97358 6.21298 6.39123 6.53350 6.67109 6.86971 7.38778 7.43613 7.68424 7.79742 8.04386 8.24911 8.52892 8.89171 9.17534 9.62483 Molecular weight = 205.06amu Principal moments of inertia in cm(-1) A = 0.060080 B = 0.010731 C = 0.009320 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 465.930337 B = 2608.568076 C = 3003.582002 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.780 5.780 2 C 0.068 3.932 3 Si 0.930 3.070 4 H -0.258 1.258 5 H -0.272 1.272 6 H -0.260 1.260 7 C -0.405 4.405 8 H 0.094 0.906 9 C 0.036 3.964 10 C 0.190 3.810 11 N -0.466 5.466 12 C 0.338 3.662 13 N -0.503 5.503 14 C 0.012 3.988 15 C -0.135 4.135 16 N -0.348 5.348 17 C 0.060 3.940 18 O -0.460 6.460 19 H 0.296 0.704 20 H 0.183 0.817 21 H 0.167 0.833 22 H 0.162 0.838 23 H 0.352 0.648 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.010 0.968 -0.061 5.103 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.404 5.404 2 C -0.153 4.153 3 Si 0.753 3.247 4 H -0.183 1.183 5 H -0.197 1.197 6 H -0.185 1.185 7 C -0.435 4.435 8 H 0.112 0.888 9 C 0.028 3.972 10 C 0.000 4.000 11 N -0.178 5.178 12 C -0.008 4.008 13 N -0.227 5.227 14 C -0.145 4.145 15 C -0.271 4.271 16 N -0.029 5.029 17 C -0.094 4.094 18 O -0.263 6.263 19 H 0.108 0.892 20 H 0.200 0.800 21 H 0.184 0.816 22 H 0.179 0.821 23 H 0.207 0.793 Dipole moment (debyes) X Y Z Total from point charges 3.022 0.826 -0.536 3.179 hybrid contribution 2.280 0.678 0.836 2.521 sum 5.302 1.503 0.301 5.520 Atomic orbital electron populations 1.69784 1.07757 1.31321 1.31543 1.26132 0.95062 1.02375 0.91701 0.85969 0.79932 0.78328 0.80499 1.18256 1.19682 1.18452 1.19285 0.98457 0.89620 1.36104 0.88798 1.18393 0.94648 0.90882 0.93271 1.23915 0.90179 0.94812 0.91078 1.67469 1.29967 0.95462 1.24910 1.21645 0.87947 0.93244 0.98002 1.70410 1.29267 0.96165 1.26827 1.22027 0.94084 0.98782 0.99577 1.22170 1.08089 0.82087 1.14746 1.44271 1.21378 1.06306 1.30994 1.18719 0.95960 0.83534 1.11223 1.84441 1.13935 1.93958 1.33932 0.89240 0.80027 0.81554 0.82071 0.79348 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.78 -17.35 10.94 55.53 0.61 -16.74 14 2 C 0.07 1.46 5.17 -17.34 -0.09 1.37 14 3 Si 0.93 15.89 29.59 -169.99 -5.03 10.86 14 4 H -0.26 -4.35 7.11 56.52 0.40 -3.94 14 5 H -0.27 -4.54 7.11 56.52 0.40 -4.14 14 6 H -0.26 -4.48 7.11 56.52 0.40 -4.08 14 7 C -0.41 -9.36 8.75 -37.97 -0.33 -9.69 14 8 H 0.09 2.05 7.68 -52.48 -0.40 1.65 14 9 C 0.04 0.89 5.60 -106.49 -0.60 0.29 14 10 C 0.19 4.68 9.93 -16.62 -0.17 4.52 14 11 N -0.47 -12.20 10.42 -13.32 -0.14 -12.34 14 12 C 0.34 8.94 8.91 -322.25 -2.87 6.07 14 13 N -0.50 -12.67 11.30 -14.42 -0.16 -12.83 14 14 C 0.01 0.25 11.82 -17.93 -0.21 0.04 14 15 C -0.13 -2.90 11.69 -16.27 -0.19 -3.09 14 16 N -0.35 -8.65 2.95 -63.39 -0.19 -8.83 14 17 C 0.06 1.47 7.85 -14.54 -0.11 1.36 14 18 O -0.46 -9.96 12.64 -16.03 -0.20 -10.17 14 19 H 0.30 5.88 8.30 -40.82 -0.34 5.54 14 20 H 0.18 4.24 6.17 -52.49 -0.32 3.91 14 21 H 0.17 2.72 8.06 -52.49 -0.42 2.30 14 22 H 0.16 2.90 8.06 -52.49 -0.42 2.48 14 23 H 0.35 5.85 9.15 45.56 0.42 6.27 14 LS Contribution 216.31 15.07 3.26 3.26 Total: -1.00 -29.21 216.31 -6.71 -35.93 By element: Atomic # 1 Polarization: 10.28 SS G_CDS: -0.29 Total: 9.99 kcal Atomic # 6 Polarization: 5.44 SS G_CDS: -4.57 Total: 0.87 kcal Atomic # 7 Polarization: -50.86 SS G_CDS: 0.12 Total: -50.74 kcal Atomic # 8 Polarization: -9.96 SS G_CDS: -0.20 Total: -10.17 kcal Atomic # 14 Polarization: 15.89 SS G_CDS: -5.03 Total: 10.86 kcal Total LS contribution 3.26 Total: 3.26 kcal Total: -29.21 -6.71 -35.93 kcal The number of atoms in the molecule is 23 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260001355.mol2 23 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 86.474 kcal (2) G-P(sol) polarization free energy of solvation -29.212 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 57.262 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.715 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.927 kcal (6) G-S(sol) free energy of system = (1) + (5) 50.547 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.16 seconds