Wall clock time and date at job start Mon Mar 30 2020 02:10:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31079 * 1 3 3 Si 1.86799 * 119.99873 * 2 1 4 4 H 1.48496 * 109.46945 * 239.99829 * 3 2 1 5 5 H 1.48497 * 109.47272 * 0.02562 * 3 2 1 6 6 H 1.48507 * 109.47008 * 120.00258 * 3 2 1 7 7 C 1.39659 * 119.99598 * 179.97438 * 2 1 3 8 8 H 1.08008 * 119.99304 * 197.43086 * 7 2 1 9 9 C 1.41104 * 120.00574 * 17.43306 * 7 2 1 10 10 C 1.41723 * 120.76095 * 24.09942 * 9 7 2 11 11 N 1.30886 * 120.14533 * 180.30510 * 10 9 7 12 12 C 1.34300 * 121.73598 * 359.72318 * 11 10 9 13 13 N 1.32527 * 131.40451 * 180.02562 * 12 11 10 14 14 C 1.33691 * 109.41128 * 180.02562 * 13 12 11 15 15 C 1.34880 * 108.65916 * 359.97438 * 14 13 12 16 16 N 1.37117 * 120.83846 * 359.97438 * 12 11 10 17 17 C 1.36383 * 120.31725 * 359.97438 * 16 12 11 18 18 O 1.34760 * 120.75652 * 180.02562 * 17 16 12 19 19 H 0.96998 * 119.99815 * 359.97438 * 1 2 3 20 20 H 1.07995 * 119.92599 * 0.02562 * 10 9 7 21 21 H 1.08002 * 125.67311 * 180.02562 * 14 13 12 22 22 H 1.07996 * 126.50962 * 180.02562 * 15 14 13 23 23 H 0.96697 * 116.99749 * 90.00011 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3108 0.0000 0.0000 3 14 2.2448 1.6178 0.0000 4 1 3.0985 1.6964 -1.2125 5 1 1.2798 2.7465 0.0006 6 1 3.0986 1.6964 1.2125 7 6 2.0090 -1.2095 0.0005 8 1 3.0519 -1.2308 0.2808 9 6 1.3521 -2.4036 -0.3650 10 6 0.2031 -2.3743 -1.1941 11 7 -0.4004 -3.4889 -1.5208 12 6 0.0423 -4.6830 -1.0946 13 7 -0.4100 -5.9110 -1.3037 14 6 0.3715 -6.7873 -0.6644 15 6 1.3498 -6.1098 -0.0294 16 7 1.1524 -4.7767 -0.2953 17 6 1.8273 -3.6526 0.0802 18 8 2.9196 -3.7345 0.8651 19 1 -0.4850 0.8400 0.0004 20 1 -0.1781 -1.4299 -1.5533 21 1 0.2417 -7.8595 -0.6582 22 1 2.1391 -6.5348 0.5729 23 1 3.7735 -3.8264 0.4208 RHF calculation, no. of doubly occupied orbitals= 36 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260001355.mol2 23 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:10:45 Heat of formation + Delta-G solvation = 31.482044 kcal Electronic energy + Delta-G solvation = -12781.897954 eV Core-core repulsion = 10402.937101 eV Total energy + Delta-G solvation = -2378.960853 eV No. of doubly occupied orbitals = 36 Molecular weight (most abundant/longest-lived isotopes) = 205.059 amu Computer time = 0.17 seconds Orbital eigenvalues (eV) -43.30634 -39.32038 -37.92237 -35.83580 -34.00331 -31.81304 -29.71628 -27.27547 -24.80803 -23.62475 -22.27748 -19.92219 -19.66926 -18.47147 -17.71272 -17.02524 -16.69042 -15.77444 -15.18111 -14.82709 -14.61302 -14.27302 -13.70465 -13.24349 -13.01852 -12.72795 -12.22481 -12.07676 -11.85819 -11.24630 -11.12474 -10.61450 -9.76792 -9.03945 -8.73418 -6.58194 -0.02662 0.56056 1.42437 1.50437 1.58715 1.90914 2.02364 2.16537 2.56480 3.03928 3.13474 3.48023 3.99194 4.28810 4.54989 4.70876 4.76737 5.00169 5.14649 5.64162 5.68564 5.97640 6.04623 6.30139 6.50152 6.83835 7.14443 7.35863 8.01120 Molecular weight = 205.06amu Principal moments of inertia in cm(-1) A = 0.060080 B = 0.010731 C = 0.009320 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 465.930337 B = 2608.568076 C = 3003.582002 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.804 5.804 2 C 0.035 3.965 3 Si 1.005 2.995 4 H -0.252 1.252 5 H -0.264 1.264 6 H -0.258 1.258 7 C -0.418 4.418 8 H 0.103 0.897 9 C 0.012 3.988 10 C 0.182 3.818 11 N -0.488 5.488 12 C 0.295 3.705 13 N -0.530 5.530 14 C 0.016 3.984 15 C -0.137 4.137 16 N -0.354 5.354 17 C 0.037 3.963 18 O -0.463 6.463 19 H 0.308 0.692 20 H 0.187 0.813 21 H 0.214 0.786 22 H 0.197 0.803 23 H 0.376 0.624 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.283 1.426 0.515 6.463 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.428 5.428 2 C -0.184 4.184 3 Si 0.823 3.177 4 H -0.175 1.175 5 H -0.188 1.188 6 H -0.182 1.182 7 C -0.446 4.446 8 H 0.121 0.879 9 C 0.005 3.995 10 C -0.007 4.007 11 N -0.201 5.201 12 C -0.050 4.050 13 N -0.255 5.255 14 C -0.140 4.140 15 C -0.272 4.272 16 N -0.036 5.036 17 C -0.117 4.117 18 O -0.267 6.267 19 H 0.119 0.881 20 H 0.204 0.796 21 H 0.231 0.769 22 H 0.214 0.786 23 H 0.233 0.767 Dipole moment (debyes) X Y Z Total from point charges 4.297 1.267 0.037 4.480 hybrid contribution 1.899 0.492 0.707 2.085 sum 6.196 1.759 0.744 6.483 Atomic orbital electron populations 1.69802 1.09273 1.33039 1.30710 1.27064 0.95666 1.05313 0.90395 0.84872 0.78548 0.73702 0.80560 1.17541 1.18753 1.18242 1.19627 0.98956 0.89995 1.36021 0.87911 1.18688 0.94966 0.91929 0.93957 1.24000 0.90600 0.94647 0.91468 1.67389 1.30888 0.96079 1.25767 1.21848 0.89497 0.93611 1.00061 1.70393 1.30624 0.96469 1.28063 1.22861 0.92796 1.00472 0.97836 1.22921 1.08857 0.80938 1.14487 1.44407 1.20998 1.07455 1.30723 1.18791 0.97288 0.83649 1.11991 1.84331 1.14454 1.93891 1.34048 0.88061 0.79628 0.76908 0.78598 0.76680 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.80 -35.39 10.94 21.79 0.24 -35.15 14 2 C 0.03 1.44 5.17 85.15 0.44 1.88 14 3 Si 1.00 30.86 29.59 68.60 2.03 32.89 14 4 H -0.25 -7.45 7.11 99.48 0.71 -6.74 14 5 H -0.26 -7.68 7.11 99.48 0.71 -6.97 14 6 H -0.26 -7.85 7.11 99.48 0.71 -7.14 14 7 C -0.42 -19.07 8.75 23.32 0.20 -18.86 14 8 H 0.10 4.38 7.68 -2.91 -0.02 4.36 14 9 C 0.01 0.62 5.60 -21.08 -0.12 0.50 14 10 C 0.18 9.21 9.93 85.70 0.85 10.07 14 11 N -0.49 -26.34 10.42 -196.06 -2.04 -28.39 14 12 C 0.30 15.84 8.91 261.29 2.33 18.16 14 13 N -0.53 -26.62 11.30 -199.54 -2.26 -28.88 14 14 C 0.02 0.65 11.82 83.64 0.99 1.64 14 15 C -0.14 -5.63 11.69 83.06 0.97 -4.66 14 16 N -0.35 -17.49 2.95 -465.64 -1.38 -18.87 14 17 C 0.04 1.82 7.85 84.63 0.66 2.49 14 18 O -0.46 -19.47 12.64 -80.26 -1.01 -20.49 14 19 H 0.31 11.93 8.30 -92.71 -0.77 11.16 14 20 H 0.19 8.93 6.17 -2.91 -0.02 8.91 14 21 H 0.21 6.19 8.06 -2.91 -0.02 6.16 14 22 H 0.20 6.42 8.06 -2.91 -0.02 6.40 14 23 H 0.38 11.86 9.15 -74.06 -0.68 11.18 14 Total: -1.00 -62.85 216.31 2.49 -60.36 By element: Atomic # 1 Polarization: 26.72 SS G_CDS: 0.59 Total: 27.31 kcal Atomic # 6 Polarization: 4.89 SS G_CDS: 6.33 Total: 11.22 kcal Atomic # 7 Polarization: -105.85 SS G_CDS: -5.44 Total: -111.29 kcal Atomic # 8 Polarization: -19.47 SS G_CDS: -1.01 Total: -20.49 kcal Atomic # 14 Polarization: 30.86 SS G_CDS: 2.03 Total: 32.89 kcal Total: -62.85 2.49 -60.36 kcal The number of atoms in the molecule is 23 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260001355.mol2 23 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 91.838 kcal (2) G-P(sol) polarization free energy of solvation -62.849 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 28.989 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.493 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.356 kcal (6) G-S(sol) free energy of system = (1) + (5) 31.482 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.17 seconds