Wall clock time and date at job start Mon Mar 30 2020 01:59:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08998 * 109.47533 * 2 1 4 4 C 1.50706 * 109.47238 * 240.00493 * 2 1 3 5 5 H 1.07998 * 119.99629 * 239.99904 * 4 2 1 6 6 C 1.37875 * 119.99955 * 59.99333 * 4 2 1 7 7 N 1.31510 * 120.00308 * 0.02562 * 6 4 2 8 8 Si 1.86800 * 119.99908 * 180.02562 * 6 4 2 9 9 H 1.48500 * 109.47233 * 0.02562 * 8 6 4 10 10 H 1.48500 * 109.46997 * 120.00173 * 8 6 4 11 11 H 1.48501 * 109.47364 * 240.00497 * 8 6 4 12 12 C 1.52992 * 109.47482 * 120.00154 * 2 1 3 13 13 H 1.09001 * 109.47066 * 60.00169 * 12 2 1 14 14 C 1.52997 * 109.47482 * 179.97438 * 12 2 1 15 15 C 1.50696 * 109.47490 * 300.00187 * 12 2 1 16 16 C 1.38243 * 119.99902 * 299.72831 * 15 12 2 17 17 C 1.38227 * 120.00077 * 179.80474 * 16 15 12 18 18 C 1.38240 * 119.99875 * 0.39731 * 17 16 15 19 19 C 1.38234 * 120.00078 * 359.85634 * 18 17 16 20 20 C 1.38230 * 120.00343 * 119.99253 * 15 12 2 21 21 H 1.09002 * 109.47153 * 299.99629 * 1 2 3 22 22 H 1.09001 * 109.46832 * 179.97438 * 1 2 3 23 23 H 1.09004 * 109.47261 * 59.99801 * 1 2 3 24 24 H 0.96998 * 120.00365 * 179.97438 * 7 6 4 25 25 H 1.09004 * 109.47261 * 180.02562 * 14 12 2 26 26 H 1.09002 * 109.47153 * 300.00216 * 14 12 2 27 27 H 1.09001 * 109.47289 * 60.00300 * 14 12 2 28 28 H 1.07996 * 119.99670 * 359.97438 * 16 15 12 29 29 H 1.07997 * 120.00234 * 180.22740 * 17 16 15 30 30 H 1.08002 * 119.99674 * 179.83073 * 18 17 16 31 31 H 1.08000 * 120.00021 * 179.97438 * 19 18 17 32 32 H 1.08000 * 120.00372 * 359.97438 * 20 15 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0324 -0.7103 -1.2306 5 1 2.6533 -1.5884 -1.1315 6 6 1.6992 -0.2392 -2.4828 7 7 0.9434 0.8302 -2.6034 8 14 2.3213 -1.1201 -4.0080 9 1 3.1455 -2.2874 -3.6040 10 1 1.1660 -1.5865 -4.8161 11 1 3.1465 -0.1871 -4.8166 12 6 2.0400 -0.7212 1.2491 13 1 1.6768 -1.7489 1.2491 14 6 3.5700 -0.7218 1.2488 15 6 1.5378 -0.0110 2.4797 16 6 1.8763 1.3109 2.7013 17 6 1.4123 1.9636 3.8280 18 6 0.6165 1.2921 4.7372 19 6 0.2822 -0.0312 4.5183 20 6 0.7430 -0.6828 3.3895 21 1 -0.3633 0.5138 0.8900 22 1 -0.3633 -1.0277 -0.0005 23 1 -0.3634 0.5139 -0.8900 24 1 0.7093 1.1619 -3.4844 25 1 3.9334 -1.2361 2.1386 26 1 3.9330 -1.2358 0.3588 27 1 3.9338 0.3057 1.2487 28 1 2.5011 1.8344 1.9928 29 1 1.6738 2.9974 3.9993 30 1 0.2562 1.8013 5.6189 31 1 -0.3392 -0.5560 5.2288 32 1 0.4817 -1.7166 3.2184 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260022848.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:59:29 Heat of formation + Delta-G solvation = 1.541010 kcal Electronic energy + Delta-G solvation = -13063.730162 eV Core-core repulsion = 10988.270317 eV Total energy + Delta-G solvation = -2075.459845 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 204.121 amu Computer time = 0.19 seconds Orbital eigenvalues (eV) -39.01969 -35.56686 -32.42444 -30.43925 -29.50241 -28.37112 -24.96926 -23.11413 -22.12518 -21.11792 -18.78722 -16.56537 -15.99377 -14.72821 -14.65841 -14.22263 -13.26673 -13.14320 -12.88504 -12.43075 -12.16188 -12.07265 -11.48778 -11.04408 -10.97618 -10.81561 -10.65287 -10.36975 -10.12937 -10.04161 -9.63349 -9.21412 -8.69339 -8.45288 -8.27921 -8.01734 -5.93983 -3.99931 1.86812 1.89857 3.31160 3.39422 3.42725 4.29889 4.46976 5.31172 5.33019 5.36993 5.44630 5.63161 5.93514 6.02161 6.07078 6.27609 6.29027 6.50379 6.61675 6.78057 6.89338 6.91372 6.93491 7.05010 7.08813 7.21018 7.39761 7.45712 7.52873 7.78829 8.04592 8.21395 8.50487 9.03557 9.64296 11.11851 Molecular weight = 204.12amu Principal moments of inertia in cm(-1) A = 0.055928 B = 0.008506 C = 0.008223 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 500.525528 B = 3291.103783 C = 3404.219481 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C 0.055 3.945 3 H 0.027 0.973 4 C -0.509 4.509 5 H 0.057 0.943 6 C 0.060 3.940 7 N -0.890 5.890 8 Si 0.887 3.113 9 H -0.274 1.274 10 H -0.285 1.285 11 H -0.285 1.285 12 C -0.052 4.052 13 H 0.063 0.937 14 C -0.129 4.129 15 C -0.044 4.044 16 C -0.114 4.114 17 C -0.122 4.122 18 C -0.143 4.143 19 C -0.124 4.124 20 C -0.127 4.127 21 H 0.008 0.992 22 H 0.021 0.979 23 H 0.079 0.921 24 H 0.258 0.742 25 H 0.031 0.969 26 H 0.066 0.934 27 H 0.047 0.953 28 H 0.121 0.879 29 H 0.114 0.886 30 H 0.111 0.889 31 H 0.112 0.888 32 H 0.115 0.885 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.715 -0.407 10.488 10.520 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C 0.037 3.963 3 H 0.045 0.955 4 C -0.547 4.547 5 H 0.075 0.925 6 C -0.141 4.141 7 N -0.529 5.529 8 Si 0.716 3.284 9 H -0.198 1.198 10 H -0.212 1.212 11 H -0.211 1.211 12 C -0.071 4.071 13 H 0.081 0.919 14 C -0.186 4.186 15 C -0.044 4.044 16 C -0.132 4.132 17 C -0.140 4.140 18 C -0.161 4.161 19 C -0.142 4.142 20 C -0.145 4.145 21 H 0.027 0.973 22 H 0.041 0.959 23 H 0.098 0.902 24 H 0.068 0.932 25 H 0.050 0.950 26 H 0.085 0.915 27 H 0.066 0.934 28 H 0.139 0.861 29 H 0.132 0.868 30 H 0.129 0.871 31 H 0.130 0.870 32 H 0.133 0.867 Dipole moment (debyes) X Y Z Total from point charges 0.640 -0.297 10.346 10.370 hybrid contribution 0.150 -0.396 -0.906 1.000 sum 0.791 -0.693 9.441 9.499 Atomic orbital electron populations 1.21791 0.98874 0.98676 0.99981 1.18698 0.92428 0.95465 0.89715 0.95501 1.21259 1.30703 1.12208 0.90510 0.92469 1.24963 0.95206 0.95040 0.98898 1.69908 1.36976 1.23040 1.23018 0.86609 0.78616 0.79738 0.83459 1.19835 1.21159 1.21139 1.20424 0.95121 0.98738 0.92810 0.91896 1.21723 0.95399 1.01131 1.00368 1.20275 0.94653 0.94088 0.95397 1.21078 1.00363 0.94679 0.97031 1.21075 0.98566 0.99379 0.95018 1.20953 1.00439 0.95056 0.99671 1.21018 1.00435 0.95012 0.97739 1.21083 0.98957 0.99861 0.94582 0.97295 0.95934 0.90209 0.93211 0.94991 0.91488 0.93406 0.86075 0.86817 0.87054 0.86956 0.86661 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.37 8.72 37.16 0.32 -3.05 16 2 C 0.06 1.37 1.72 -91.77 -0.16 1.21 16 3 H 0.03 0.72 7.41 -51.93 -0.38 0.34 16 4 C -0.51 -13.74 7.83 -34.44 -0.27 -14.01 16 5 H 0.06 1.52 6.71 -52.49 -0.35 1.17 16 6 C 0.06 1.65 5.30 -17.82 -0.09 1.56 16 7 N -0.89 -25.64 11.32 55.43 0.63 -25.01 16 8 Si 0.89 21.28 29.54 -169.99 -5.02 16.26 16 9 H -0.27 -6.45 7.11 56.52 0.40 -6.05 16 10 H -0.29 -6.84 7.11 56.52 0.40 -6.44 16 11 H -0.29 -6.82 7.11 56.52 0.40 -6.41 16 12 C -0.05 -1.09 2.11 -91.78 -0.19 -1.28 16 13 H 0.06 1.31 7.88 -51.93 -0.41 0.90 16 14 C -0.13 -2.46 8.75 37.16 0.33 -2.14 16 15 C -0.04 -0.83 3.52 -104.62 -0.37 -1.20 16 16 C -0.11 -2.04 8.71 -39.58 -0.34 -2.39 16 17 C -0.12 -1.91 10.05 -39.58 -0.40 -2.31 16 18 C -0.14 -2.08 10.05 -39.58 -0.40 -2.48 16 19 C -0.12 -1.86 10.05 -39.58 -0.40 -2.25 16 20 C -0.13 -2.15 9.67 -39.59 -0.38 -2.53 16 21 H 0.01 0.19 7.22 -51.93 -0.37 -0.18 16 22 H 0.02 0.53 8.14 -51.93 -0.42 0.11 16 23 H 0.08 2.19 6.07 -51.93 -0.32 1.87 16 24 H 0.26 7.09 8.31 -40.82 -0.34 6.75 16 25 H 0.03 0.53 8.14 -51.93 -0.42 0.11 16 26 H 0.07 1.34 6.62 -51.93 -0.34 1.00 16 27 H 0.05 0.89 7.38 -51.93 -0.38 0.51 16 28 H 0.12 2.20 7.11 -52.49 -0.37 1.83 16 29 H 0.11 1.49 8.06 -52.49 -0.42 1.07 16 30 H 0.11 1.31 8.06 -52.49 -0.42 0.89 16 31 H 0.11 1.37 8.06 -52.49 -0.42 0.95 16 32 H 0.12 1.81 7.95 -52.49 -0.42 1.39 16 LS Contribution 261.75 15.07 3.94 3.94 Total: -1.00 -28.48 261.75 -7.41 -35.88 By element: Atomic # 1 Polarization: 4.40 SS G_CDS: -4.60 Total: -0.20 kcal Atomic # 6 Polarization: -28.52 SS G_CDS: -2.36 Total: -30.88 kcal Atomic # 7 Polarization: -25.64 SS G_CDS: 0.63 Total: -25.01 kcal Atomic # 14 Polarization: 21.28 SS G_CDS: -5.02 Total: 16.26 kcal Total LS contribution 3.94 Total: 3.94 kcal Total: -28.48 -7.41 -35.88 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260022848.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 37.422 kcal (2) G-P(sol) polarization free energy of solvation -28.476 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 8.947 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.406 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.881 kcal (6) G-S(sol) free energy of system = (1) + (5) 1.541 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.19 seconds