Wall clock time and date at job start Mon Mar 30 2020 01:59:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08998 * 109.47533 * 2 1 4 4 C 1.50706 * 109.47238 * 240.00493 * 2 1 3 5 5 H 1.07998 * 119.99629 * 239.99904 * 4 2 1 6 6 C 1.37875 * 119.99955 * 59.99333 * 4 2 1 7 7 N 1.31510 * 120.00308 * 0.02562 * 6 4 2 8 8 Si 1.86800 * 119.99908 * 180.02562 * 6 4 2 9 9 H 1.48500 * 109.47233 * 0.02562 * 8 6 4 10 10 H 1.48500 * 109.46997 * 120.00173 * 8 6 4 11 11 H 1.48501 * 109.47364 * 240.00497 * 8 6 4 12 12 C 1.52992 * 109.47482 * 120.00154 * 2 1 3 13 13 H 1.09001 * 109.47066 * 60.00169 * 12 2 1 14 14 C 1.52997 * 109.47482 * 179.97438 * 12 2 1 15 15 C 1.50696 * 109.47490 * 300.00187 * 12 2 1 16 16 C 1.38243 * 119.99902 * 299.72831 * 15 12 2 17 17 C 1.38227 * 120.00077 * 179.80474 * 16 15 12 18 18 C 1.38240 * 119.99875 * 0.39731 * 17 16 15 19 19 C 1.38234 * 120.00078 * 359.85634 * 18 17 16 20 20 C 1.38230 * 120.00343 * 119.99253 * 15 12 2 21 21 H 1.09002 * 109.47153 * 299.99629 * 1 2 3 22 22 H 1.09001 * 109.46832 * 179.97438 * 1 2 3 23 23 H 1.09004 * 109.47261 * 59.99801 * 1 2 3 24 24 H 0.96998 * 120.00365 * 179.97438 * 7 6 4 25 25 H 1.09004 * 109.47261 * 180.02562 * 14 12 2 26 26 H 1.09002 * 109.47153 * 300.00216 * 14 12 2 27 27 H 1.09001 * 109.47289 * 60.00300 * 14 12 2 28 28 H 1.07996 * 119.99670 * 359.97438 * 16 15 12 29 29 H 1.07997 * 120.00234 * 180.22740 * 17 16 15 30 30 H 1.08002 * 119.99674 * 179.83073 * 18 17 16 31 31 H 1.08000 * 120.00021 * 179.97438 * 19 18 17 32 32 H 1.08000 * 120.00372 * 359.97438 * 20 15 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0324 -0.7103 -1.2306 5 1 2.6533 -1.5884 -1.1315 6 6 1.6992 -0.2392 -2.4828 7 7 0.9434 0.8302 -2.6034 8 14 2.3213 -1.1201 -4.0080 9 1 3.1455 -2.2874 -3.6040 10 1 1.1660 -1.5865 -4.8161 11 1 3.1465 -0.1871 -4.8166 12 6 2.0400 -0.7212 1.2491 13 1 1.6768 -1.7489 1.2491 14 6 3.5700 -0.7218 1.2488 15 6 1.5378 -0.0110 2.4797 16 6 1.8763 1.3109 2.7013 17 6 1.4123 1.9636 3.8280 18 6 0.6165 1.2921 4.7372 19 6 0.2822 -0.0312 4.5183 20 6 0.7430 -0.6828 3.3895 21 1 -0.3633 0.5138 0.8900 22 1 -0.3633 -1.0277 -0.0005 23 1 -0.3634 0.5139 -0.8900 24 1 0.7093 1.1619 -3.4844 25 1 3.9334 -1.2361 2.1386 26 1 3.9330 -1.2358 0.3588 27 1 3.9338 0.3057 1.2487 28 1 2.5011 1.8344 1.9928 29 1 1.6738 2.9974 3.9993 30 1 0.2562 1.8013 5.6189 31 1 -0.3392 -0.5560 5.2288 32 1 0.4817 -1.7166 3.2184 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260022848.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:59:29 Heat of formation + Delta-G solvation = -12.356290 kcal Electronic energy + Delta-G solvation = -13064.332794 eV Core-core repulsion = 10988.270317 eV Total energy + Delta-G solvation = -2076.062477 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 204.121 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -40.36817 -37.26003 -34.33859 -31.67675 -31.21823 -29.96453 -27.04908 -24.65735 -23.45260 -22.73491 -20.42744 -18.41889 -17.45342 -16.64469 -16.05355 -15.59443 -14.91528 -14.81287 -14.22528 -14.06790 -13.84415 -13.66323 -13.01907 -12.89654 -12.69779 -12.61490 -12.26907 -12.08167 -11.95986 -11.65900 -11.42226 -10.99314 -10.69203 -10.39109 -9.69703 -9.37271 -8.05175 -6.17914 0.62119 0.63213 1.40569 1.42784 1.53597 2.45112 3.03696 3.22450 4.02562 4.09245 4.27510 4.38909 4.43392 4.67163 4.73640 4.79910 4.81252 4.93988 5.04208 5.20774 5.27768 5.31921 5.35444 5.45672 5.49063 5.66873 5.70837 5.73358 5.87681 6.07949 6.16607 6.26712 6.42886 6.93952 7.49715 8.99897 Molecular weight = 204.12amu Principal moments of inertia in cm(-1) A = 0.055928 B = 0.008506 C = 0.008223 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 500.525528 B = 3291.103783 C = 3404.219481 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 C 0.056 3.944 3 H -0.004 1.004 4 C -0.521 4.521 5 H 0.058 0.942 6 C 0.008 3.992 7 N -0.921 5.921 8 Si 0.951 3.049 9 H -0.265 1.265 10 H -0.283 1.283 11 H -0.283 1.283 12 C -0.045 4.045 13 H 0.059 0.941 14 C -0.123 4.123 15 C -0.068 4.068 16 C -0.135 4.135 17 C -0.125 4.125 18 C -0.137 4.137 19 C -0.121 4.121 20 C -0.138 4.138 21 H 0.020 0.980 22 H 0.022 0.978 23 H 0.050 0.950 24 H 0.258 0.742 25 H 0.056 0.944 26 H 0.052 0.948 27 H 0.043 0.957 28 H 0.105 0.895 29 H 0.137 0.863 30 H 0.147 0.853 31 H 0.145 0.855 32 H 0.123 0.877 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.553 -0.898 12.135 12.181 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C 0.038 3.962 3 H 0.014 0.986 4 C -0.560 4.560 5 H 0.076 0.924 6 C -0.190 4.190 7 N -0.561 5.561 8 Si 0.777 3.223 9 H -0.189 1.189 10 H -0.209 1.209 11 H -0.209 1.209 12 C -0.064 4.064 13 H 0.077 0.923 14 C -0.180 4.180 15 C -0.068 4.068 16 C -0.153 4.153 17 C -0.143 4.143 18 C -0.155 4.155 19 C -0.139 4.139 20 C -0.156 4.156 21 H 0.039 0.961 22 H 0.042 0.958 23 H 0.069 0.931 24 H 0.067 0.933 25 H 0.075 0.925 26 H 0.071 0.929 27 H 0.062 0.938 28 H 0.123 0.877 29 H 0.155 0.845 30 H 0.165 0.835 31 H 0.163 0.837 32 H 0.141 0.859 Dipole moment (debyes) X Y Z Total from point charges 0.486 -0.797 12.002 12.038 hybrid contribution 0.173 -0.200 -1.331 1.357 sum 0.659 -0.997 10.671 10.738 Atomic orbital electron populations 1.21605 0.99055 0.98284 0.99007 1.18604 0.92222 0.94063 0.91314 0.98554 1.21618 1.30472 1.12236 0.91629 0.92383 1.25746 0.95506 0.95782 1.01917 1.70047 1.38101 1.24382 1.23582 0.85612 0.78095 0.78807 0.79790 1.18933 1.20921 1.20864 1.20213 0.95970 0.98055 0.92154 0.92269 1.21647 0.94528 1.01036 1.00815 1.20128 0.96618 0.94640 0.95446 1.21100 1.01328 0.94744 0.98131 1.21378 0.98197 1.00544 0.94182 1.21405 0.98920 0.94966 1.00162 1.21412 0.99827 0.95347 0.97278 1.21268 0.98792 1.00472 0.95101 0.96150 0.95850 0.93108 0.93272 0.92518 0.92889 0.93782 0.87678 0.84500 0.83489 0.83695 0.85865 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -6.18 8.72 71.98 0.63 -5.55 16 2 C 0.06 2.86 1.72 -11.54 -0.02 2.84 16 3 H 0.00 -0.21 7.41 -2.39 -0.02 -0.22 16 4 C -0.52 -28.66 7.83 25.60 0.20 -28.46 16 5 H 0.06 3.11 6.71 -2.91 -0.02 3.09 16 6 C 0.01 0.46 5.30 84.65 0.45 0.91 16 7 N -0.92 -54.28 11.32 21.45 0.24 -54.04 16 8 Si 0.95 44.04 29.54 68.60 2.03 46.07 16 9 H -0.27 -11.81 7.11 99.48 0.71 -11.10 16 10 H -0.28 -12.94 7.11 99.48 0.71 -12.24 16 11 H -0.28 -12.90 7.11 99.48 0.71 -12.19 16 12 C -0.05 -1.90 2.11 -11.54 -0.02 -1.92 16 13 H 0.06 2.47 7.88 -2.39 -0.02 2.45 16 14 C -0.12 -4.72 8.75 71.98 0.63 -4.09 16 15 C -0.07 -2.54 3.52 -19.87 -0.07 -2.61 16 16 C -0.13 -4.81 8.71 22.27 0.19 -4.62 16 17 C -0.13 -3.62 10.05 22.27 0.22 -3.40 16 18 C -0.14 -3.46 10.05 22.27 0.22 -3.23 16 19 C -0.12 -3.19 10.05 22.27 0.22 -2.96 16 20 C -0.14 -4.43 9.67 22.27 0.22 -4.22 16 21 H 0.02 0.94 7.22 -2.39 -0.02 0.92 16 22 H 0.02 1.12 8.14 -2.39 -0.02 1.10 16 23 H 0.05 2.86 6.07 -2.38 -0.01 2.84 16 24 H 0.26 14.48 8.31 -92.71 -0.77 13.71 16 25 H 0.06 1.86 8.14 -2.38 -0.02 1.84 16 26 H 0.05 2.13 6.62 -2.39 -0.02 2.12 16 27 H 0.04 1.68 7.38 -2.39 -0.02 1.66 16 28 H 0.11 3.97 7.11 -2.91 -0.02 3.95 16 29 H 0.14 3.23 8.06 -2.91 -0.02 3.21 16 30 H 0.15 2.68 8.06 -2.91 -0.02 2.66 16 31 H 0.15 2.86 8.06 -2.91 -0.02 2.83 16 32 H 0.12 3.64 7.95 -2.91 -0.02 3.62 16 Total: -1.00 -61.25 261.75 6.22 -55.03 By element: Atomic # 1 Polarization: 9.16 SS G_CDS: 1.08 Total: 10.24 kcal Atomic # 6 Polarization: -60.18 SS G_CDS: 2.87 Total: -57.31 kcal Atomic # 7 Polarization: -54.28 SS G_CDS: 0.24 Total: -54.04 kcal Atomic # 14 Polarization: 44.04 SS G_CDS: 2.03 Total: 46.07 kcal Total: -61.25 6.22 -55.03 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260022848.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 42.678 kcal (2) G-P(sol) polarization free energy of solvation -61.253 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -18.575 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.219 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -55.035 kcal (6) G-S(sol) free energy of system = (1) + (5) -12.356 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds