Wall clock time and date at job start Mon Mar 30 2020 02:00:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31462 * 1 3 3 Si 1.86805 * 120.00177 * 2 1 4 4 H 1.48503 * 109.46520 * 269.99681 * 3 2 1 5 5 H 1.48494 * 109.47122 * 29.99540 * 3 2 1 6 6 H 1.48503 * 109.47091 * 149.99976 * 3 2 1 7 7 C 1.38882 * 119.99796 * 179.97438 * 2 1 3 8 8 H 1.08009 * 120.00100 * 186.92943 * 7 2 1 9 9 N 1.37191 * 120.00144 * 6.92819 * 7 2 1 10 10 C 1.47094 * 125.55759 * 354.22119 * 9 7 2 11 11 C 1.54093 * 103.78425 * 180.02562 * 10 9 7 12 12 H 1.08997 * 110.52314 * 241.37233 * 11 10 9 13 13 C 1.53005 * 110.52043 * 118.77150 * 11 10 9 14 14 Cl 1.80300 * 109.46804 * 175.00267 * 13 11 10 15 15 O 1.45704 * 104.00667 * 359.77073 * 11 10 9 16 16 C 1.33798 * 109.47723 * 0.39337 * 15 11 10 17 17 O 1.21501 * 123.08047 * 179.83051 * 16 15 11 18 18 H 0.97006 * 119.99326 * 0.02562 * 1 2 3 19 19 H 1.08998 * 110.56761 * 298.59946 * 10 9 7 20 20 H 1.09004 * 110.56057 * 61.30239 * 10 9 7 21 21 H 1.09000 * 109.46872 * 295.00056 * 13 11 10 22 22 H 1.09000 * 109.46995 * 55.00183 * 13 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3146 0.0000 0.0000 3 14 2.2487 1.6177 0.0000 4 1 2.4962 2.0463 -1.4002 5 1 1.4462 2.6527 0.6999 6 1 3.5463 1.4401 0.7001 7 6 2.0090 -1.2028 0.0005 8 1 3.0832 -1.2062 0.1134 9 7 1.3305 -2.3866 -0.1422 10 6 -0.1324 -2.5345 -0.1837 11 6 -0.3433 -4.0513 -0.3547 12 1 -0.8647 -4.2617 -1.2885 13 6 -1.1214 -4.6218 0.8328 14 17 -1.4795 -6.3637 0.5356 15 8 1.0087 -4.5929 -0.3969 16 6 1.8925 -3.5969 -0.2661 17 8 3.0946 -3.7730 -0.2647 18 1 -0.4849 0.8402 -0.0004 19 1 -0.5788 -2.1886 0.7485 20 1 -0.5483 -1.9898 -1.0314 21 1 -0.5243 -4.5232 1.7394 22 1 -2.0560 -4.0738 0.9518 RHF calculation, no. of doubly occupied orbitals= 34 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260054813.mol2 22 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:00:41 Heat of formation + Delta-G solvation = -99.390798 kcal Electronic energy + Delta-G solvation = -11657.278127 eV Core-core repulsion = 9237.916601 eV Total energy + Delta-G solvation = -2419.361526 eV No. of doubly occupied orbitals = 34 Molecular weight (most abundant/longest-lived isotopes) = 205.029 amu Computer time = 0.12 seconds Orbital eigenvalues (eV) -42.30324 -38.05164 -36.88550 -36.81616 -33.70062 -32.51406 -28.17407 -26.33694 -23.49202 -22.35188 -19.77063 -18.13216 -17.44262 -17.33197 -16.34917 -15.75089 -15.46465 -14.87789 -14.66060 -14.31507 -13.98147 -13.49613 -12.90691 -12.75734 -12.45205 -12.13001 -11.96237 -11.42198 -11.38922 -11.25946 -11.11533 -10.07370 -8.47515 -6.04803 1.18492 1.39510 1.44543 1.55670 1.94558 2.01146 2.36810 2.99389 3.08567 3.45076 3.58857 3.84311 4.34828 4.43102 4.53459 4.95539 5.18344 5.34530 6.06914 6.39244 6.91835 7.20547 7.76176 8.61662 Molecular weight = 205.03amu Principal moments of inertia in cm(-1) A = 0.058541 B = 0.009920 C = 0.008686 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 478.182910 B = 2821.794622 C = 3222.699322 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.897 5.897 2 C 0.004 3.996 3 Si 1.001 2.999 4 H -0.271 1.271 5 H -0.267 1.267 6 H -0.273 1.273 7 C -0.333 4.333 8 H 0.085 0.915 9 N -0.467 5.467 10 C 0.116 3.884 11 C 0.049 3.951 12 H 0.138 0.862 13 C -0.026 4.026 14 Cl -0.183 7.183 15 O -0.341 6.341 16 C 0.566 3.434 17 O -0.618 6.618 18 H 0.281 0.719 19 H 0.093 0.907 20 H 0.094 0.906 21 H 0.096 0.904 22 H 0.152 0.848 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.350 -2.114 1.025 8.675 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.536 5.536 2 C -0.197 4.197 3 Si 0.824 3.176 4 H -0.196 1.196 5 H -0.191 1.191 6 H -0.198 1.198 7 C -0.459 4.459 8 H 0.103 0.897 9 N -0.200 5.200 10 C -0.008 4.008 11 C -0.008 4.008 12 H 0.155 0.845 13 C -0.088 4.088 14 Cl -0.157 7.157 15 O -0.252 6.252 16 C 0.321 3.679 17 O -0.513 6.513 18 H 0.091 0.909 19 H 0.111 0.889 20 H 0.112 0.888 21 H 0.115 0.885 22 H 0.170 0.830 Dipole moment (debyes) X Y Z Total from point charges -7.950 -2.404 0.994 8.364 hybrid contribution 0.442 0.649 -0.011 0.785 sum -7.508 -1.755 0.984 7.772 Atomic orbital electron populations 1.69870 1.06294 1.29271 1.48149 1.26008 0.96911 1.01850 0.94981 0.84803 0.77882 0.76182 0.78721 1.19645 1.19114 1.19786 1.19514 0.92603 0.81679 1.52070 0.89726 1.43828 1.06678 1.04734 1.64714 1.22635 0.81563 0.91066 1.05501 1.24603 0.81043 0.93111 1.01996 0.84466 1.24796 1.03712 0.81978 0.98337 1.98713 1.95763 1.24109 1.97090 1.87193 1.17870 1.32792 1.87308 1.18526 0.85416 0.80887 0.83097 1.90778 1.12265 1.85135 1.63137 0.90909 0.88867 0.88827 0.88514 0.82984 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -42.57 10.42 21.65 0.23 -42.35 14 2 C 0.00 0.21 5.48 84.90 0.47 0.68 14 3 Si 1.00 39.56 29.56 68.60 2.03 41.59 14 4 H -0.27 -10.52 7.11 99.48 0.71 -9.81 14 5 H -0.27 -9.85 7.11 99.48 0.71 -9.14 14 6 H -0.27 -10.97 7.11 99.48 0.71 -10.26 14 7 C -0.33 -18.19 9.93 84.01 0.83 -17.35 14 8 H 0.08 4.90 7.69 -2.91 -0.02 4.88 14 9 N -0.47 -23.99 3.08 -764.06 -2.35 -26.34 14 10 C 0.12 4.64 5.31 86.64 0.46 5.10 14 11 C 0.05 1.60 3.90 30.97 0.12 1.73 14 12 H 0.14 3.77 8.14 -2.39 -0.02 3.75 14 13 C -0.03 -0.65 6.21 71.98 0.45 -0.21 14 14 Cl -0.18 -4.88 29.14 -2.72 -0.08 -4.96 14 15 O -0.34 -15.11 10.80 -47.57 -0.51 -15.62 14 16 C 0.57 30.23 8.80 129.91 1.14 31.37 14 17 O -0.62 -37.94 17.54 19.68 0.35 -37.59 14 18 H 0.28 12.38 8.31 -92.70 -0.77 11.61 14 19 H 0.09 3.66 7.23 -2.39 -0.02 3.64 14 20 H 0.09 3.83 7.38 -2.38 -0.02 3.81 14 21 H 0.10 2.62 8.14 -2.39 -0.02 2.60 14 22 H 0.15 2.77 8.14 -2.39 -0.02 2.75 14 Total: -1.00 -64.49 216.52 4.36 -60.13 By element: Atomic # 1 Polarization: 2.60 SS G_CDS: 1.23 Total: 3.83 kcal Atomic # 6 Polarization: 17.84 SS G_CDS: 3.47 Total: 21.31 kcal Atomic # 7 Polarization: -66.56 SS G_CDS: -2.13 Total: -68.69 kcal Atomic # 8 Polarization: -53.04 SS G_CDS: -0.17 Total: -53.21 kcal Atomic # 14 Polarization: 39.56 SS G_CDS: 2.03 Total: 41.59 kcal Atomic # 17 Polarization: -4.88 SS G_CDS: -0.08 Total: -4.96 kcal Total: -64.49 4.36 -60.13 kcal The number of atoms in the molecule is 22 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260054813.mol2 22 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -39.262 kcal (2) G-P(sol) polarization free energy of solvation -64.487 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -103.749 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.358 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.129 kcal (6) G-S(sol) free energy of system = (1) + (5) -99.391 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.12 seconds