Wall clock time and date at job start Mon Mar 30 2020 02:04:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31561 * 1 3 3 Si 1.86802 * 120.00105 * 2 1 4 4 H 1.48495 * 109.47256 * 270.27632 * 3 2 1 5 5 H 1.48501 * 109.46982 * 30.27419 * 3 2 1 6 6 H 1.48497 * 109.47162 * 150.27612 * 3 2 1 7 7 C 1.38645 * 119.99937 * 180.27883 * 2 1 3 8 8 H 1.08001 * 120.00098 * 359.72407 * 7 2 1 9 9 O 1.34807 * 119.99808 * 179.72835 * 7 2 1 10 10 C 1.35767 * 116.99847 * 174.93420 * 9 7 2 11 11 C 1.38452 * 120.09989 * 5.60736 * 10 9 7 12 12 C 1.38647 * 120.52678 * 179.74742 * 11 10 9 13 13 C 1.37691 * 120.44255 * 0.51718 * 12 11 10 14 14 C 1.39789 * 119.81422 * 359.74642 * 13 12 11 15 15 C 1.46576 * 133.65756 * 180.02562 * 14 13 12 16 16 N 1.29750 * 107.41693 * 179.97438 * 15 14 13 17 17 O 1.41357 * 109.70942 * 0.02562 * 16 15 14 18 18 C 1.34851 * 109.31857 * 359.97438 * 17 16 15 19 19 H 0.97000 * 119.99850 * 359.72567 * 1 2 3 20 20 H 1.08002 * 119.73562 * 359.97438 * 11 10 9 21 21 H 1.08000 * 119.78366 * 180.26546 * 12 11 10 22 22 H 1.07992 * 120.08889 * 179.77260 * 13 12 11 23 23 H 1.07999 * 126.28841 * 359.97438 * 15 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3156 0.0000 0.0000 3 14 2.2497 1.6177 0.0000 4 1 2.4913 2.0498 -1.4000 5 1 1.4500 2.6510 0.7058 6 1 3.5501 1.4385 0.6942 7 6 2.0088 -1.2007 -0.0058 8 1 1.4688 -2.1360 -0.0059 9 8 3.3569 -1.2006 -0.0114 10 6 3.9737 -2.4059 0.0899 11 6 3.2267 -3.5715 0.0759 12 6 3.8478 -4.8072 0.1735 13 6 5.2166 -4.8922 0.2965 14 6 5.9863 -3.7255 0.3179 15 6 7.4239 -3.4637 0.4328 16 7 7.5885 -2.1772 0.3963 17 8 6.3339 -1.5397 0.2624 18 6 5.3620 -2.4733 0.2144 19 1 -0.4850 0.8401 0.0040 20 1 2.1519 -3.5179 -0.0155 21 1 3.2538 -5.7090 0.1570 22 1 5.6941 -5.8576 0.3758 23 1 8.2029 -4.2053 0.5300 RHF calculation, no. of doubly occupied orbitals= 36 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260074807.mol2 23 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:04:47 Heat of formation + Delta-G solvation = 41.748136 kcal Electronic energy + Delta-G solvation = -12538.255258 eV Core-core repulsion = 10127.446824 eV Total energy + Delta-G solvation = -2410.808433 eV No. of doubly occupied orbitals = 36 Molecular weight (most abundant/longest-lived isotopes) = 205.053 amu Computer time = 0.16 seconds Orbital eigenvalues (eV) -41.16564 -38.59981 -36.10891 -33.10163 -32.44652 -29.57612 -28.98436 -25.47492 -22.64875 -22.23293 -21.17796 -18.39446 -17.63544 -16.56046 -15.60306 -15.51304 -14.73934 -14.23015 -13.70311 -13.58927 -13.22664 -12.63093 -12.39300 -11.58442 -11.39941 -11.13725 -11.01965 -11.00146 -10.62698 -10.31282 -9.65997 -8.98025 -8.35662 -7.40114 -6.56241 -4.20740 1.14598 1.89171 2.54334 2.95969 3.19288 3.22509 3.40358 4.16451 4.17199 4.34758 4.73570 4.80004 4.95324 5.40759 5.60251 5.74364 5.91240 5.97505 6.29707 6.59465 6.80539 7.00821 7.20946 7.46935 7.67995 7.87130 8.77293 9.35150 10.49721 Molecular weight = 205.05amu Principal moments of inertia in cm(-1) A = 0.042797 B = 0.011261 C = 0.008949 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 654.101995 B = 2485.960785 C = 3128.152606 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.868 5.868 2 C 0.068 3.932 3 Si 0.903 3.097 4 H -0.270 1.270 5 H -0.280 1.280 6 H -0.255 1.255 7 C -0.389 4.389 8 H 0.111 0.889 9 O -0.204 6.204 10 C 0.157 3.843 11 C -0.195 4.195 12 C -0.088 4.088 13 C -0.144 4.144 14 C -0.161 4.161 15 C 0.095 3.905 16 N -0.304 5.304 17 O -0.086 6.086 18 C 0.030 3.970 19 H 0.283 0.717 20 H 0.148 0.852 21 H 0.123 0.877 22 H 0.121 0.879 23 H 0.203 0.797 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.159 -7.749 0.574 11.267 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.504 5.504 2 C -0.137 4.137 3 Si 0.728 3.272 4 H -0.196 1.196 5 H -0.205 1.205 6 H -0.179 1.179 7 C -0.463 4.463 8 H 0.128 0.872 9 O -0.108 6.108 10 C 0.103 3.897 11 C -0.216 4.216 12 C -0.106 4.106 13 C -0.164 4.164 14 C -0.165 4.165 15 C -0.105 4.105 16 N -0.045 5.045 17 O -0.100 6.100 18 C -0.024 4.024 19 H 0.093 0.907 20 H 0.166 0.834 21 H 0.141 0.859 22 H 0.139 0.861 23 H 0.220 0.780 Dipole moment (debyes) X Y Z Total from point charges 8.836 -6.254 0.580 10.841 hybrid contribution -0.356 -0.041 -0.035 0.360 sum 8.480 -6.295 0.546 10.575 Atomic orbital electron populations 1.69637 1.05606 1.28959 1.46239 1.24482 0.95049 0.99076 0.95130 0.86197 0.80611 0.81073 0.79367 1.19573 1.20506 1.17904 1.20821 0.76422 0.96918 1.52177 0.87154 1.83629 1.22969 1.24815 1.79388 1.17792 0.86192 0.87135 0.98561 1.21091 1.01267 0.90427 1.08799 1.20698 0.93729 0.97047 0.99133 1.20132 0.93226 0.95604 1.07476 1.20440 0.90969 0.94079 1.10975 1.25892 0.95604 0.94494 0.94485 1.79663 0.98505 1.08231 1.18107 1.89136 1.11266 1.28491 1.81059 1.19392 0.89344 0.88650 1.05035 0.90690 0.83443 0.85892 0.86142 0.78004 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -24.33 13.96 55.48 0.77 -23.56 14 2 C 0.07 1.86 5.49 -17.52 -0.10 1.77 14 3 Si 0.90 21.71 28.62 -169.99 -4.86 16.84 14 4 H -0.27 -6.40 7.11 56.52 0.40 -6.00 14 5 H -0.28 -6.41 7.11 56.52 0.40 -6.01 14 6 H -0.26 -6.35 7.11 56.52 0.40 -5.95 14 7 C -0.39 -10.67 9.94 30.88 0.31 -10.36 14 8 H 0.11 3.00 5.43 -52.49 -0.29 2.72 14 9 O -0.20 -5.43 8.59 0.06 0.00 -5.42 14 10 C 0.16 3.67 6.66 -39.01 -0.26 3.41 14 11 C -0.19 -3.95 9.16 -39.35 -0.36 -4.31 14 12 C -0.09 -1.43 10.02 -39.63 -0.40 -1.83 14 13 C -0.14 -2.21 10.10 -39.20 -0.40 -2.61 14 14 C -0.16 -2.83 6.35 -105.18 -0.67 -3.50 14 15 C 0.10 1.41 12.32 -15.07 -0.19 1.23 14 16 N -0.30 -5.65 12.81 31.94 0.41 -5.24 14 17 O -0.09 -1.92 12.07 7.59 0.09 -1.83 14 18 C 0.03 0.66 7.43 -38.31 -0.28 0.37 14 19 H 0.28 7.31 8.31 -40.82 -0.34 6.97 14 20 H 0.15 3.04 5.61 -52.49 -0.29 2.74 14 21 H 0.12 1.60 8.06 -52.49 -0.42 1.18 14 22 H 0.12 1.40 8.06 -52.49 -0.42 0.98 14 23 H 0.20 1.84 8.06 -52.49 -0.42 1.41 14 LS Contribution 218.35 15.07 3.29 3.29 Total: -1.00 -30.09 218.35 -3.62 -33.71 By element: Atomic # 1 Polarization: -0.96 SS G_CDS: -0.98 Total: -1.95 kcal Atomic # 6 Polarization: -13.50 SS G_CDS: -2.34 Total: -15.84 kcal Atomic # 7 Polarization: -29.99 SS G_CDS: 1.18 Total: -28.80 kcal Atomic # 8 Polarization: -7.35 SS G_CDS: 0.09 Total: -7.26 kcal Atomic # 14 Polarization: 21.71 SS G_CDS: -4.86 Total: 16.84 kcal Total LS contribution 3.29 Total: 3.29 kcal Total: -30.09 -3.62 -33.71 kcal The number of atoms in the molecule is 23 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260074807.mol2 23 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 75.456 kcal (2) G-P(sol) polarization free energy of solvation -30.088 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 45.368 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.620 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.708 kcal (6) G-S(sol) free energy of system = (1) + (5) 41.748 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.16 seconds