Wall clock time and date at job start Mon Mar 30 2020 02:04:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31561 * 1 3 3 Si 1.86802 * 120.00105 * 2 1 4 4 H 1.48495 * 109.47256 * 270.27632 * 3 2 1 5 5 H 1.48501 * 109.46982 * 30.27419 * 3 2 1 6 6 H 1.48497 * 109.47162 * 150.27612 * 3 2 1 7 7 C 1.38645 * 119.99937 * 180.27883 * 2 1 3 8 8 H 1.08001 * 120.00098 * 359.72407 * 7 2 1 9 9 O 1.34807 * 119.99808 * 179.72835 * 7 2 1 10 10 C 1.35767 * 116.99847 * 174.93420 * 9 7 2 11 11 C 1.38452 * 120.09989 * 5.60736 * 10 9 7 12 12 C 1.38647 * 120.52678 * 179.74742 * 11 10 9 13 13 C 1.37691 * 120.44255 * 0.51718 * 12 11 10 14 14 C 1.39789 * 119.81422 * 359.74642 * 13 12 11 15 15 C 1.46576 * 133.65756 * 180.02562 * 14 13 12 16 16 N 1.29750 * 107.41693 * 179.97438 * 15 14 13 17 17 O 1.41357 * 109.70942 * 0.02562 * 16 15 14 18 18 C 1.34851 * 109.31857 * 359.97438 * 17 16 15 19 19 H 0.97000 * 119.99850 * 359.72567 * 1 2 3 20 20 H 1.08002 * 119.73562 * 359.97438 * 11 10 9 21 21 H 1.08000 * 119.78366 * 180.26546 * 12 11 10 22 22 H 1.07992 * 120.08889 * 179.77260 * 13 12 11 23 23 H 1.07999 * 126.28841 * 359.97438 * 15 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3156 0.0000 0.0000 3 14 2.2497 1.6177 0.0000 4 1 2.4913 2.0498 -1.4000 5 1 1.4500 2.6510 0.7058 6 1 3.5501 1.4385 0.6942 7 6 2.0088 -1.2007 -0.0058 8 1 1.4688 -2.1360 -0.0059 9 8 3.3569 -1.2006 -0.0114 10 6 3.9737 -2.4059 0.0899 11 6 3.2267 -3.5715 0.0759 12 6 3.8478 -4.8072 0.1735 13 6 5.2166 -4.8922 0.2965 14 6 5.9863 -3.7255 0.3179 15 6 7.4239 -3.4637 0.4328 16 7 7.5885 -2.1772 0.3963 17 8 6.3339 -1.5397 0.2624 18 6 5.3620 -2.4733 0.2144 19 1 -0.4850 0.8401 0.0040 20 1 2.1519 -3.5179 -0.0155 21 1 3.2538 -5.7090 0.1570 22 1 5.6941 -5.8576 0.3758 23 1 8.2029 -4.2053 0.5300 RHF calculation, no. of doubly occupied orbitals= 36 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260074807.mol2 23 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:04:47 Heat of formation + Delta-G solvation = 20.635801 kcal Electronic energy + Delta-G solvation = -12539.170757 eV Core-core repulsion = 10127.446824 eV Total energy + Delta-G solvation = -2411.723933 eV No. of doubly occupied orbitals = 36 Molecular weight (most abundant/longest-lived isotopes) = 205.053 amu Computer time = 0.15 seconds Orbital eigenvalues (eV) -42.62519 -40.30660 -37.66712 -34.71103 -34.24934 -31.06155 -30.56253 -27.36170 -24.14823 -23.69899 -22.62484 -20.20405 -19.29106 -18.12124 -17.28395 -17.04662 -16.28780 -15.92127 -15.46613 -15.01376 -14.78803 -14.35280 -14.13282 -13.26661 -13.04813 -12.67449 -12.52964 -12.40857 -12.19007 -12.14383 -11.57967 -10.95957 -9.84033 -9.03332 -8.57150 -6.27603 -0.28951 0.40953 1.17342 1.25835 1.30862 1.44968 1.47110 2.22606 2.62330 2.79259 2.97447 3.38220 3.46767 4.03122 4.18143 4.37711 4.45393 4.56942 4.95286 5.17479 5.30868 5.49228 5.58094 5.76706 5.91731 6.23936 6.77076 7.48244 8.53483 Molecular weight = 205.05amu Principal moments of inertia in cm(-1) A = 0.042797 B = 0.011261 C = 0.008949 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 654.101995 B = 2485.960785 C = 3128.152606 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.911 5.911 2 C 0.020 3.980 3 Si 0.957 3.043 4 H -0.266 1.266 5 H -0.260 1.260 6 H -0.277 1.277 7 C -0.399 4.399 8 H 0.097 0.903 9 O -0.248 6.248 10 C 0.108 3.892 11 C -0.184 4.184 12 C -0.094 4.094 13 C -0.091 4.091 14 C -0.167 4.167 15 C 0.139 3.861 16 N -0.325 5.325 17 O -0.144 6.144 18 C -0.004 4.004 19 H 0.287 0.713 20 H 0.134 0.866 21 H 0.169 0.831 22 H 0.185 0.815 23 H 0.273 0.727 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.836 -11.221 0.857 15.622 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.551 5.551 2 C -0.180 4.180 3 Si 0.780 3.220 4 H -0.191 1.191 5 H -0.184 1.184 6 H -0.202 1.202 7 C -0.475 4.475 8 H 0.114 0.886 9 O -0.156 6.156 10 C 0.058 3.942 11 C -0.205 4.205 12 C -0.112 4.112 13 C -0.111 4.111 14 C -0.170 4.170 15 C -0.061 4.061 16 N -0.071 5.071 17 O -0.152 6.152 18 C -0.057 4.057 19 H 0.097 0.903 20 H 0.152 0.848 21 H 0.187 0.813 22 H 0.202 0.798 23 H 0.289 0.711 Dipole moment (debyes) X Y Z Total from point charges 11.496 -9.730 0.858 15.086 hybrid contribution -0.848 0.533 -0.086 1.006 sum 10.648 -9.198 0.771 14.091 Atomic orbital electron populations 1.69690 1.06382 1.29668 1.49400 1.25093 0.95771 1.01549 0.95543 0.85414 0.78582 0.78640 0.79329 1.19099 1.18443 1.20185 1.20796 0.77410 0.96651 1.52607 0.88555 1.83589 1.22007 1.26814 1.83163 1.18434 0.87524 0.87224 1.01030 1.21355 1.00853 0.91562 1.06698 1.21232 0.94994 0.96644 0.98324 1.20928 0.92474 0.97233 1.00478 1.21004 0.92457 0.93144 1.10429 1.26957 0.95392 0.94127 0.89651 1.79680 0.96705 1.10228 1.20508 1.89106 1.12783 1.30534 1.82782 1.19751 0.88999 0.90786 1.06156 0.90337 0.84830 0.81326 0.79817 0.71141 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -53.70 13.96 21.61 0.30 -53.40 14 2 C 0.02 1.18 5.49 84.83 0.47 1.65 14 3 Si 0.96 47.31 28.62 68.60 1.96 49.27 14 4 H -0.27 -12.72 7.11 99.48 0.71 -12.01 14 5 H -0.26 -11.80 7.11 99.48 0.71 -11.09 14 6 H -0.28 -14.43 7.11 99.48 0.71 -13.73 14 7 C -0.40 -23.40 9.94 67.92 0.68 -22.72 14 8 H 0.10 5.65 5.43 -2.91 -0.02 5.63 14 9 O -0.25 -14.11 8.59 -22.69 -0.19 -14.30 14 10 C 0.11 5.22 6.66 22.64 0.15 5.37 14 11 C -0.18 -7.41 9.16 22.42 0.21 -7.20 14 12 C -0.09 -2.64 10.02 22.24 0.22 -2.42 14 13 C -0.09 -2.18 10.10 22.52 0.23 -1.95 14 14 C -0.17 -5.15 6.35 -20.22 -0.13 -5.28 14 15 C 0.14 3.37 12.32 87.18 1.07 4.45 14 16 N -0.32 -11.36 12.81 -52.85 -0.68 -12.04 14 17 O -0.14 -6.64 12.07 29.55 0.36 -6.28 14 18 C 0.00 -0.16 7.43 23.09 0.17 0.01 14 19 H 0.29 15.52 8.31 -92.71 -0.77 14.75 14 20 H 0.13 5.71 5.61 -2.91 -0.02 5.69 14 21 H 0.17 3.29 8.06 -2.91 -0.02 3.27 14 22 H 0.18 2.32 8.06 -2.91 -0.02 2.29 14 23 H 0.27 2.47 8.06 -2.91 -0.02 2.45 14 Total: -1.00 -73.65 218.35 6.06 -67.59 By element: Atomic # 1 Polarization: -3.99 SS G_CDS: 1.25 Total: -2.74 kcal Atomic # 6 Polarization: -31.17 SS G_CDS: 3.06 Total: -28.10 kcal Atomic # 7 Polarization: -65.06 SS G_CDS: -0.38 Total: -65.44 kcal Atomic # 8 Polarization: -20.74 SS G_CDS: 0.16 Total: -20.58 kcal Atomic # 14 Polarization: 47.31 SS G_CDS: 1.96 Total: 49.27 kcal Total: -73.65 6.06 -67.59 kcal The number of atoms in the molecule is 23 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260074807.mol2 23 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 88.228 kcal (2) G-P(sol) polarization free energy of solvation -73.654 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 14.574 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.062 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.592 kcal (6) G-S(sol) free energy of system = (1) + (5) 20.636 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.15 seconds