Wall clock time and date at job start Mon Mar 30 2020 02:05:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31341 * 1 3 3 Si 1.86796 * 119.99971 * 2 1 4 4 H 1.48505 * 109.46689 * 239.99830 * 3 2 1 5 5 H 1.48496 * 109.47238 * 359.97438 * 3 2 1 6 6 H 1.48498 * 109.47437 * 120.00441 * 3 2 1 7 7 C 1.39095 * 119.99681 * 179.97438 * 2 1 3 8 8 H 1.07996 * 119.99475 * 180.02562 * 7 2 1 9 9 N 1.36407 * 120.00084 * 359.97438 * 7 2 1 10 10 O 1.41345 * 125.58440 * 0.03100 * 9 7 2 11 11 C 1.34932 * 109.80782 * 179.97438 * 10 9 7 12 12 C 1.39013 * 132.59854 * 179.97438 * 11 10 9 13 13 C 1.37870 * 120.01451 * 180.02562 * 12 11 10 14 14 C 1.38726 * 120.61167 * 0.02562 * 13 12 11 15 15 C 1.37707 * 120.29047 * 359.90906 * 14 13 12 16 16 C 1.39641 * 119.70893 * 0.15036 * 15 14 13 17 17 C 1.34958 * 125.58682 * 179.97438 * 9 7 2 18 18 O 1.21806 * 126.68032 * 0.02562 * 17 9 7 19 19 H 0.97003 * 119.99906 * 359.97438 * 1 2 3 20 20 H 1.08002 * 119.99426 * 0.02713 * 12 11 10 21 21 H 1.08004 * 119.68972 * 179.97438 * 13 12 11 22 22 H 1.07997 * 119.85019 * 179.97438 * 14 13 12 23 23 H 1.07998 * 120.14454 * 180.02562 * 15 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3134 0.0000 0.0000 3 14 2.2474 1.6177 0.0000 4 1 3.1011 1.6963 -1.2125 5 1 1.2824 2.7464 -0.0006 6 1 3.1012 1.6964 1.2124 7 6 2.0088 -1.2046 0.0005 8 1 3.0888 -1.2046 0.0010 9 7 1.3267 -2.3859 0.0016 10 8 -0.0800 -2.5234 0.0016 11 6 -0.4116 -3.8314 0.0022 12 6 -1.6347 -4.4920 0.0030 13 6 -1.6742 -5.8701 0.0041 14 6 -0.5010 -6.6104 0.0050 15 6 0.7209 -5.9755 0.0029 16 6 0.7758 -4.5802 0.0031 17 6 1.8845 -3.6149 0.0017 18 8 3.0747 -3.8737 0.0013 19 1 -0.4850 0.8401 0.0004 20 1 -2.5543 -3.9255 0.0027 21 1 -2.6274 -6.3779 0.0051 22 1 -0.5463 -7.6894 0.0062 23 1 1.6328 -6.5542 0.0032 RHF calculation, no. of doubly occupied orbitals= 36 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260081820.mol2 23 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:05:19 Heat of formation + Delta-G solvation = 30.607001 kcal Electronic energy + Delta-G solvation = -12727.416750 eV Core-core repulsion = 10316.125201 eV Total energy + Delta-G solvation = -2411.291549 eV No. of doubly occupied orbitals = 36 Molecular weight (most abundant/longest-lived isotopes) = 205.053 amu Computer time = 0.15 seconds Orbital eigenvalues (eV) -40.74431 -37.24860 -36.30167 -33.71007 -31.27008 -30.33706 -29.35362 -25.87793 -22.64278 -22.03093 -20.02516 -18.62699 -16.75711 -16.16160 -15.35564 -15.33971 -14.63186 -13.88670 -13.70684 -13.36980 -12.96789 -12.55264 -11.89835 -11.79815 -11.66385 -11.23782 -11.05922 -10.66162 -10.55832 -9.81337 -8.70031 -8.63514 -8.39981 -7.60580 -6.71990 -4.21346 1.44024 1.87556 2.70381 3.03024 3.07819 3.13589 3.63141 3.91005 4.35195 4.70476 4.94766 5.20140 5.35414 5.55075 5.70297 5.95647 6.06778 6.48039 6.71651 6.79353 6.88034 7.08725 7.20490 7.62054 8.08476 8.63197 8.89611 9.52814 10.35284 Molecular weight = 205.05amu Principal moments of inertia in cm(-1) A = 0.057576 B = 0.010668 C = 0.009029 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 486.194236 B = 2624.059735 C = 3100.412798 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.835 5.835 2 C 0.036 3.964 3 Si 0.943 3.057 4 H -0.265 1.265 5 H -0.277 1.277 6 H -0.265 1.265 7 C -0.311 4.311 8 H 0.144 0.856 9 N -0.268 5.268 10 O -0.012 6.012 11 C 0.079 3.921 12 C -0.133 4.133 13 C -0.081 4.081 14 C -0.172 4.172 15 C -0.030 4.030 16 C -0.220 4.220 17 C 0.456 3.544 18 O -0.572 6.572 19 H 0.280 0.720 20 H 0.128 0.872 21 H 0.128 0.872 22 H 0.123 0.877 23 H 0.125 0.875 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.385 -5.327 0.008 6.900 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.468 5.468 2 C -0.174 4.174 3 Si 0.767 3.233 4 H -0.190 1.190 5 H -0.202 1.202 6 H -0.190 1.190 7 C -0.435 4.435 8 H 0.161 0.839 9 N -0.028 5.028 10 O -0.004 6.004 11 C 0.025 3.975 12 C -0.153 4.153 13 C -0.100 4.100 14 C -0.190 4.190 15 C -0.049 4.049 16 C -0.225 4.225 17 C 0.250 3.750 18 O -0.460 6.460 19 H 0.090 0.910 20 H 0.146 0.854 21 H 0.146 0.854 22 H 0.141 0.859 23 H 0.143 0.857 Dipole moment (debyes) X Y Z Total from point charges -4.065 -4.876 0.007 6.349 hybrid contribution 0.004 0.785 -0.001 0.785 sum -4.062 -4.091 0.006 5.765 Atomic orbital electron populations 1.69906 1.06112 1.28995 1.41814 1.25581 0.95877 1.00392 0.95541 0.85728 0.78931 0.78925 0.79750 1.19024 1.20191 1.19019 1.20038 0.91534 0.79313 1.52591 0.83949 1.46144 0.89456 1.07078 1.60116 1.89355 1.08045 1.18168 1.84786 1.20177 0.95259 0.85423 0.96653 1.19849 0.94006 0.93681 1.07743 1.20832 0.98308 0.92382 0.98515 1.20827 0.92001 0.99480 1.06727 1.20510 0.97986 0.91554 0.94873 1.20835 0.94454 0.95330 1.11890 1.17682 0.88263 0.81621 0.87421 1.90715 1.14793 1.80334 1.60152 0.90999 0.85370 0.85426 0.85891 0.85677 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.83 -22.62 11.87 55.50 0.66 -21.96 14 2 C 0.04 0.94 5.50 -17.44 -0.10 0.84 14 3 Si 0.94 19.51 29.55 -169.99 -5.02 14.49 14 4 H -0.27 -5.38 7.11 56.52 0.40 -4.98 14 5 H -0.28 -5.57 7.11 56.52 0.40 -5.17 14 6 H -0.27 -5.38 7.11 56.52 0.40 -4.98 14 7 C -0.31 -8.67 10.06 -15.20 -0.15 -8.82 14 8 H 0.14 3.84 7.79 -52.49 -0.41 3.43 14 9 N -0.27 -7.57 3.84 -12.11 -0.05 -7.61 14 10 O -0.01 -0.33 9.83 7.37 0.07 -0.26 14 11 C 0.08 1.80 7.43 -38.49 -0.29 1.51 14 12 C -0.13 -2.38 10.06 -39.43 -0.40 -2.78 14 13 C -0.08 -1.20 10.02 -39.54 -0.40 -1.59 14 14 C -0.17 -2.61 10.03 -39.60 -0.40 -3.00 14 15 C -0.03 -0.55 10.10 -39.25 -0.40 -0.95 14 16 C -0.22 -5.11 6.33 -105.02 -0.67 -5.77 14 17 C 0.46 12.52 8.14 -12.63 -0.10 12.41 14 18 O -0.57 -16.76 17.85 5.09 0.09 -16.67 14 19 H 0.28 6.95 8.31 -40.82 -0.34 6.61 14 20 H 0.13 2.01 8.06 -52.49 -0.42 1.59 14 21 H 0.13 1.38 8.06 -52.48 -0.42 0.96 14 22 H 0.12 1.42 8.06 -52.49 -0.42 1.00 14 23 H 0.13 2.14 8.06 -52.49 -0.42 1.71 14 LS Contribution 220.28 15.07 3.32 3.32 Total: -1.00 -31.63 220.28 -5.05 -36.68 By element: Atomic # 1 Polarization: 1.41 SS G_CDS: -1.23 Total: 0.17 kcal Atomic # 6 Polarization: -5.26 SS G_CDS: -2.89 Total: -8.15 kcal Atomic # 7 Polarization: -30.19 SS G_CDS: 0.61 Total: -29.58 kcal Atomic # 8 Polarization: -17.09 SS G_CDS: 0.16 Total: -16.93 kcal Atomic # 14 Polarization: 19.51 SS G_CDS: -5.02 Total: 14.49 kcal Total LS contribution 3.32 Total: 3.32 kcal Total: -31.63 -5.05 -36.68 kcal The number of atoms in the molecule is 23 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260081820.mol2 23 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 67.290 kcal (2) G-P(sol) polarization free energy of solvation -31.631 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 35.660 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.053 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.683 kcal (6) G-S(sol) free energy of system = (1) + (5) 30.607 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.15 seconds