Wall clock time and date at job start Mon Mar 30 2020 02:06:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30690 * 1 3 3 Si 1.86804 * 119.99542 * 2 1 4 4 H 1.48500 * 109.46846 * 179.97438 * 3 2 1 5 5 H 1.48504 * 109.46862 * 299.99712 * 3 2 1 6 6 H 1.48500 * 109.47407 * 59.99800 * 3 2 1 7 7 C 1.40109 * 120.00279 * 179.97438 * 2 1 3 8 8 H 1.08005 * 120.00105 * 180.02562 * 7 2 1 9 9 C 1.41230 * 120.00073 * 0.02562 * 7 2 1 10 10 N 1.31946 * 126.53645 * 0.03699 * 9 7 2 11 11 O 1.41317 * 109.35265 * 179.97438 * 10 9 7 12 12 C 1.34943 * 109.70074 * 359.78239 * 11 10 9 13 13 C 1.39035 * 132.95176 * 179.55527 * 12 11 10 14 14 C 1.37914 * 120.07092 * 180.36319 * 13 12 11 15 15 C 1.38522 * 120.61237 * 0.28248 * 14 13 12 16 16 C 1.38437 * 120.22313 * 359.97297 * 15 14 13 17 17 O 1.35792 * 120.20444 * 180.02562 * 16 15 14 18 18 C 1.39736 * 119.60307 * 0.02562 * 16 15 14 19 19 H 0.96999 * 120.00519 * 0.02562 * 1 2 3 20 20 H 1.08002 * 119.96780 * 0.64782 * 13 12 11 21 21 H 1.08000 * 119.69006 * 180.25137 * 14 13 12 22 22 H 1.08003 * 119.89302 * 179.97438 * 15 14 13 23 23 H 0.96705 * 113.99979 * 89.99979 * 17 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3069 0.0000 0.0000 3 14 2.2408 1.6178 0.0000 4 1 3.7008 1.3465 0.0006 5 1 1.8820 2.3965 -1.2126 6 1 1.8820 2.3966 1.2125 7 6 2.0075 -1.2133 0.0005 8 1 3.0876 -1.2133 0.0010 9 6 1.3014 -2.4365 0.0005 10 7 -0.0094 -2.5868 -0.0006 11 8 -0.3228 -3.9647 -0.0008 12 6 0.8151 -4.6901 -0.0045 13 6 1.0670 -6.0574 0.0017 14 6 2.3660 -6.5207 0.0029 15 6 3.4309 -5.6348 0.0038 16 6 3.2016 -4.2696 0.0030 17 8 4.2458 -3.4015 0.0035 18 6 1.8891 -3.7901 0.0018 19 1 -0.4851 0.8400 -0.0004 20 1 0.2447 -6.7575 0.0009 21 1 2.5546 -7.5841 0.0036 22 1 4.4435 -6.0104 0.0052 23 1 4.5490 -3.1504 -0.8799 RHF calculation, no. of doubly occupied orbitals= 36 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260081886.mol2 23 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:06:04 Heat of formation + Delta-G solvation = -22.235367 kcal Electronic energy + Delta-G solvation = -12673.736121 eV Core-core repulsion = 10260.153155 eV Total energy + Delta-G solvation = -2413.582966 eV No. of doubly occupied orbitals = 36 Molecular weight (most abundant/longest-lived isotopes) = 205.053 amu Computer time = 0.15 seconds Orbital eigenvalues (eV) -41.86906 -39.22823 -37.03189 -35.97665 -33.31834 -30.55675 -30.06381 -28.30261 -23.79945 -23.33621 -22.23331 -19.77157 -18.32056 -17.84821 -17.08695 -16.73308 -16.39033 -16.08663 -15.34994 -14.71767 -14.50093 -13.59551 -13.14192 -13.12659 -12.84895 -12.59719 -12.18144 -11.94016 -11.86892 -11.85141 -11.00883 -10.79390 -9.52930 -9.20084 -8.71818 -6.94241 0.06327 0.47156 1.30243 1.38181 1.58208 1.93097 2.16723 2.59648 2.69547 3.21000 3.34603 3.98152 4.14039 4.22806 4.26258 4.55752 4.94757 5.08597 5.18371 5.38924 5.41849 5.46360 5.86494 6.15298 6.43635 6.63373 6.87671 7.48999 8.27514 Molecular weight = 205.05amu Principal moments of inertia in cm(-1) A = 0.045112 B = 0.011856 C = 0.009428 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 620.528649 B = 2361.020483 C = 2969.161327 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.794 5.794 2 C 0.013 3.987 3 Si 1.010 2.990 4 H -0.241 1.241 5 H -0.262 1.262 6 H -0.267 1.267 7 C -0.437 4.437 8 H 0.115 0.885 9 C 0.188 3.812 10 N -0.416 5.416 11 O -0.191 6.191 12 C 0.063 3.937 13 C -0.167 4.167 14 C -0.045 4.045 15 C -0.191 4.191 16 C 0.167 3.833 17 O -0.498 6.498 18 C -0.247 4.247 19 H 0.291 0.709 20 H 0.149 0.851 21 H 0.185 0.815 22 H 0.168 0.832 23 H 0.407 0.593 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.345 -6.242 -1.768 11.376 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.421 5.421 2 C -0.206 4.206 3 Si 0.828 3.172 4 H -0.164 1.164 5 H -0.187 1.187 6 H -0.192 1.192 7 C -0.476 4.476 8 H 0.132 0.868 9 C 0.033 3.967 10 N -0.193 5.193 11 O -0.186 6.186 12 C 0.009 3.991 13 C -0.187 4.187 14 C -0.063 4.063 15 C -0.209 4.209 16 C 0.121 3.879 17 O -0.311 6.311 18 C -0.251 4.251 19 H 0.101 0.899 20 H 0.167 0.833 21 H 0.203 0.797 22 H 0.185 0.815 23 H 0.266 0.734 Dipole moment (debyes) X Y Z Total from point charges 7.863 -5.852 -1.171 9.872 hybrid contribution 0.355 0.687 -0.437 0.888 sum 8.219 -5.165 -1.608 9.839 Atomic orbital electron populations 1.69966 1.09730 1.30962 1.31447 1.27338 0.95795 1.05842 0.91656 0.84743 0.79533 0.74012 0.78904 1.16384 1.18701 1.19159 1.19551 0.95598 0.87655 1.44780 0.86755 1.21638 0.90585 0.92942 0.91516 1.81253 1.13883 0.80879 1.43286 1.88927 1.28191 1.18591 1.82864 1.21027 0.87218 0.94957 0.95927 1.20441 0.99757 0.88991 1.09493 1.21303 0.89258 1.01643 0.94096 1.21531 1.01826 0.90082 1.07474 1.18272 0.83677 0.89709 0.96285 1.84652 1.47412 1.64146 1.34893 1.21847 0.96114 0.92994 1.14110 0.89887 0.83294 0.79734 0.81500 0.73388 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.79 -45.57 11.97 21.85 0.26 -45.30 14 2 C 0.01 0.69 5.50 85.32 0.47 1.16 14 3 Si 1.01 38.11 29.56 68.60 2.03 40.14 14 4 H -0.24 -8.37 7.11 99.48 0.71 -7.66 14 5 H -0.26 -9.42 7.11 99.48 0.71 -8.71 14 6 H -0.27 -9.79 7.11 99.48 0.71 -9.08 14 7 C -0.44 -24.16 9.27 23.46 0.22 -23.94 14 8 H 0.11 5.70 6.88 -2.91 -0.02 5.68 14 9 C 0.19 11.19 6.95 42.32 0.29 11.49 14 10 N -0.42 -26.82 11.14 -48.39 -0.54 -27.36 14 11 O -0.19 -11.32 12.04 28.70 0.35 -10.97 14 12 C 0.06 3.14 7.45 22.92 0.17 3.31 14 13 C -0.17 -6.02 10.06 22.38 0.23 -5.80 14 14 C -0.04 -1.22 10.01 22.26 0.22 -1.00 14 15 C -0.19 -5.70 9.98 22.39 0.22 -5.48 14 16 C 0.17 6.66 6.73 22.68 0.15 6.81 14 17 O -0.50 -17.82 12.37 -91.22 -1.13 -18.95 14 18 C -0.25 -12.57 6.27 -20.00 -0.13 -12.70 14 19 H 0.29 14.86 8.29 -92.71 -0.77 14.09 14 20 H 0.15 4.47 8.06 -2.91 -0.02 4.44 14 21 H 0.19 3.01 8.06 -2.91 -0.02 2.99 14 22 H 0.17 3.60 8.06 -2.91 -0.02 3.58 14 23 H 0.41 10.58 9.06 -74.05 -0.67 9.91 14 Total: -1.00 -76.78 219.02 3.41 -73.38 By element: Atomic # 1 Polarization: 14.64 SS G_CDS: 0.59 Total: 15.23 kcal Atomic # 6 Polarization: -28.00 SS G_CDS: 1.85 Total: -26.15 kcal Atomic # 7 Polarization: -72.39 SS G_CDS: -0.28 Total: -72.67 kcal Atomic # 8 Polarization: -29.14 SS G_CDS: -0.78 Total: -29.93 kcal Atomic # 14 Polarization: 38.11 SS G_CDS: 2.03 Total: 40.14 kcal Total: -76.78 3.41 -73.38 kcal The number of atoms in the molecule is 23 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260081886.mol2 23 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 51.140 kcal (2) G-P(sol) polarization free energy of solvation -76.784 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -25.644 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.409 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.376 kcal (6) G-S(sol) free energy of system = (1) + (5) -22.235 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.15 seconds