Wall clock time and date at job start Mon Mar 30 2020 02:08:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31562 * 1 3 3 Si 1.86802 * 120.00104 * 2 1 4 4 H 1.48502 * 109.47058 * 269.99709 * 3 2 1 5 5 H 1.48492 * 109.47297 * 30.00128 * 3 2 1 6 6 H 1.48506 * 109.47362 * 150.00135 * 3 2 1 7 7 C 1.38644 * 119.99840 * 179.97438 * 2 1 3 8 8 H 1.08006 * 119.99804 * 179.97438 * 7 2 1 9 9 O 1.34816 * 120.00331 * 359.97438 * 7 2 1 10 10 C 1.35789 * 117.00296 * 185.05793 * 9 7 2 11 11 C 1.39516 * 119.80191 * 174.43055 * 10 9 7 12 12 C 1.36575 * 120.66049 * 179.97438 * 11 10 9 13 13 C 1.38994 * 119.97500 * 0.04365 * 12 11 10 14 14 N 1.37336 * 134.87837 * 179.97438 * 13 12 11 15 15 H 0.96999 * 125.84716 * 0.02562 * 14 13 12 16 16 N 1.28786 * 108.29571 * 180.02562 * 14 13 12 17 17 N 1.28677 * 111.80348 * 0.02562 * 16 14 13 18 18 C 1.35381 * 109.11146 * 359.97438 * 17 16 14 19 19 C 1.38159 * 119.80448 * 354.44595 * 10 9 7 20 20 H 0.97001 * 119.99772 * 0.02562 * 1 2 3 21 21 H 1.07998 * 119.66920 * 0.02562 * 11 10 9 22 22 H 1.07989 * 120.01308 * 180.30931 * 12 11 10 23 23 H 1.08001 * 120.26505 * 0.03916 * 19 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3156 0.0000 0.0000 3 14 2.2497 1.6177 0.0000 4 1 2.4972 2.0464 -1.4001 5 1 1.4472 2.6527 0.7000 6 1 3.5473 1.4402 0.7000 7 6 2.0088 -1.2007 0.0005 8 1 3.0889 -1.2007 0.0001 9 8 1.3348 -2.3683 0.0016 10 6 2.0703 -3.5047 0.1087 11 6 1.4282 -4.7371 0.2331 12 6 2.1506 -5.8910 0.3415 13 6 3.5397 -5.8443 0.3294 14 7 4.5415 -6.7798 0.4155 15 1 4.4181 -7.7373 0.5094 16 7 5.6728 -6.1679 0.3501 17 7 5.5218 -4.8959 0.2274 18 6 4.1994 -4.6066 0.2058 19 6 3.4499 -3.4336 0.0943 20 1 -0.4850 0.8401 -0.0004 21 1 0.3491 -4.7790 0.2429 22 1 1.6428 -6.8397 0.4322 23 1 3.9448 -2.4785 -0.0012 RHF calculation, no. of doubly occupied orbitals= 36 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260128370.mol2 23 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:08:12 Heat of formation + Delta-G solvation = 82.448701 kcal Electronic energy + Delta-G solvation = -12392.410012 eV Core-core repulsion = 10015.659239 eV Total energy + Delta-G solvation = -2376.750773 eV No. of doubly occupied orbitals = 36 Molecular weight (most abundant/longest-lived isotopes) = 205.059 amu Computer time = 0.16 seconds Orbital eigenvalues (eV) -42.45692 -38.67247 -35.77390 -33.16745 -32.34200 -29.75885 -28.77063 -25.64697 -23.26688 -22.05803 -21.81833 -18.53324 -18.09733 -16.98503 -15.83731 -15.62534 -14.69303 -14.33986 -13.64850 -13.46768 -13.25159 -12.05553 -11.88340 -11.48013 -11.36776 -11.27197 -10.83705 -10.54040 -10.50641 -10.32793 -9.46547 -8.91504 -8.07845 -7.27161 -6.54805 -4.12447 1.20085 2.07884 2.92292 3.05372 3.11667 3.13400 3.18433 3.91333 4.31184 4.68808 4.92291 5.03893 5.38080 5.54224 5.61685 5.93761 6.08024 6.54115 6.71667 6.78831 7.00016 7.23160 7.34543 7.42218 7.90507 8.84316 8.91047 9.55184 10.62213 Molecular weight = 205.06amu Principal moments of inertia in cm(-1) A = 0.056245 B = 0.008748 C = 0.007596 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 497.704700 B = 3200.020487 C = 3685.455541 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.858 5.858 2 C 0.042 3.958 3 Si 0.942 3.058 4 H -0.272 1.272 5 H -0.277 1.277 6 H -0.265 1.265 7 C -0.390 4.390 8 H 0.097 0.903 9 O -0.168 6.168 10 C 0.145 3.855 11 C -0.113 4.113 12 C -0.078 4.078 13 C -0.045 4.045 14 N -0.421 5.421 15 H 0.442 0.558 16 N -0.040 5.040 17 N -0.273 5.273 18 C 0.064 3.936 19 C -0.207 4.207 20 H 0.272 0.728 21 H 0.135 0.865 22 H 0.125 0.875 23 H 0.141 0.859 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.715 -8.690 0.739 9.134 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.492 5.492 2 C -0.164 4.164 3 Si 0.767 3.233 4 H -0.197 1.197 5 H -0.202 1.202 6 H -0.189 1.189 7 C -0.466 4.466 8 H 0.115 0.885 9 O -0.070 6.070 10 C 0.089 3.911 11 C -0.135 4.135 12 C -0.100 4.100 13 C -0.164 4.164 14 N -0.151 5.151 15 H 0.287 0.713 16 N -0.021 5.021 17 N -0.152 5.152 18 C -0.059 4.059 19 C -0.232 4.232 20 H 0.082 0.918 21 H 0.153 0.847 22 H 0.143 0.857 23 H 0.158 0.842 Dipole moment (debyes) X Y Z Total from point charges 3.782 -8.477 0.715 9.310 hybrid contribution -0.714 0.195 0.057 0.742 sum 3.068 -8.283 0.772 8.866 Atomic orbital electron populations 1.70036 1.06040 1.28011 1.45100 1.25331 0.95874 0.98991 0.96156 0.85677 0.79081 0.79670 0.78910 1.19711 1.20182 1.18900 1.21435 0.92155 0.80515 1.52479 0.88539 1.83983 1.33983 1.11377 1.77660 1.18989 0.89576 0.88260 0.94296 1.20073 1.00202 0.89584 1.03628 1.19277 0.88672 0.98356 1.03683 1.19532 0.92396 0.89520 1.14917 1.44503 1.03640 1.10333 1.56617 0.71326 1.77743 1.08025 1.02329 1.14035 1.75470 1.15969 1.03462 1.20297 1.19699 0.89504 0.93658 1.03078 1.19961 0.92275 0.96517 1.14459 0.91810 0.84672 0.85711 0.84153 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.86 -24.20 13.67 55.48 0.76 -23.44 14 2 C 0.04 1.11 5.49 -17.52 -0.10 1.02 14 3 Si 0.94 20.11 29.55 -169.99 -5.02 15.09 14 4 H -0.27 -5.67 7.11 56.52 0.40 -5.27 14 5 H -0.28 -5.76 7.11 56.52 0.40 -5.36 14 6 H -0.26 -5.50 7.11 56.52 0.40 -5.10 14 7 C -0.39 -10.55 9.48 30.88 0.29 -10.26 14 8 H 0.10 2.46 5.19 -52.48 -0.27 2.19 14 9 O -0.17 -4.53 9.75 -0.03 0.00 -4.53 14 10 C 0.15 3.32 6.64 -39.13 -0.26 3.06 14 11 C -0.11 -2.09 9.91 -39.71 -0.39 -2.49 14 12 C -0.08 -1.23 10.01 -39.90 -0.40 -1.63 14 13 C -0.05 -0.79 7.41 -84.15 -0.62 -1.42 14 14 N -0.42 -6.21 7.06 32.35 0.23 -5.99 14 15 H 0.44 4.24 8.96 -190.25 -1.71 2.54 14 16 N -0.04 -0.71 13.28 60.35 0.80 0.09 14 17 N -0.27 -5.70 12.46 32.13 0.40 -5.30 14 18 C 0.06 1.34 7.38 -84.81 -0.63 0.72 14 19 C -0.21 -4.67 9.21 -39.09 -0.36 -5.03 14 20 H 0.27 7.04 8.31 -40.82 -0.34 6.70 14 21 H 0.14 2.25 8.06 -52.49 -0.42 1.83 14 22 H 0.12 1.44 8.06 -52.49 -0.42 1.01 14 23 H 0.14 3.24 5.61 -52.49 -0.29 2.94 14 LS Contribution 216.83 15.07 3.27 3.27 Total: -1.00 -31.08 216.83 -4.28 -35.36 By element: Atomic # 1 Polarization: 3.73 SS G_CDS: -2.25 Total: 1.47 kcal Atomic # 6 Polarization: -13.56 SS G_CDS: -2.47 Total: -16.03 kcal Atomic # 7 Polarization: -36.83 SS G_CDS: 2.19 Total: -34.64 kcal Atomic # 8 Polarization: -4.53 SS G_CDS: 0.00 Total: -4.53 kcal Atomic # 14 Polarization: 20.11 SS G_CDS: -5.02 Total: 15.09 kcal Total LS contribution 3.27 Total: 3.27 kcal Total: -31.08 -4.28 -35.36 kcal The number of atoms in the molecule is 23 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260128370.mol2 23 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 117.813 kcal (2) G-P(sol) polarization free energy of solvation -31.080 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 86.733 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.285 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.365 kcal (6) G-S(sol) free energy of system = (1) + (5) 82.449 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.16 seconds