Wall clock time and date at job start Mon Mar 30 2020 02:08:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31562 * 1 3 3 Si 1.86802 * 120.00104 * 2 1 4 4 H 1.48502 * 109.47058 * 269.99709 * 3 2 1 5 5 H 1.48492 * 109.47297 * 30.00128 * 3 2 1 6 6 H 1.48506 * 109.47362 * 150.00135 * 3 2 1 7 7 C 1.38644 * 119.99840 * 179.97438 * 2 1 3 8 8 H 1.08006 * 119.99804 * 179.97438 * 7 2 1 9 9 O 1.34816 * 120.00331 * 359.97438 * 7 2 1 10 10 C 1.35789 * 117.00296 * 185.05793 * 9 7 2 11 11 C 1.39516 * 119.80191 * 174.43055 * 10 9 7 12 12 C 1.36575 * 120.66049 * 179.97438 * 11 10 9 13 13 C 1.38994 * 119.97500 * 0.04365 * 12 11 10 14 14 N 1.37336 * 134.87837 * 179.97438 * 13 12 11 15 15 H 0.96999 * 125.84716 * 0.02562 * 14 13 12 16 16 N 1.28786 * 108.29571 * 180.02562 * 14 13 12 17 17 N 1.28677 * 111.80348 * 0.02562 * 16 14 13 18 18 C 1.35381 * 109.11146 * 359.97438 * 17 16 14 19 19 C 1.38159 * 119.80448 * 354.44595 * 10 9 7 20 20 H 0.97001 * 119.99772 * 0.02562 * 1 2 3 21 21 H 1.07998 * 119.66920 * 0.02562 * 11 10 9 22 22 H 1.07989 * 120.01308 * 180.30931 * 12 11 10 23 23 H 1.08001 * 120.26505 * 0.03916 * 19 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3156 0.0000 0.0000 3 14 2.2497 1.6177 0.0000 4 1 2.4972 2.0464 -1.4001 5 1 1.4472 2.6527 0.7000 6 1 3.5473 1.4402 0.7000 7 6 2.0088 -1.2007 0.0005 8 1 3.0889 -1.2007 0.0001 9 8 1.3348 -2.3683 0.0016 10 6 2.0703 -3.5047 0.1087 11 6 1.4282 -4.7371 0.2331 12 6 2.1506 -5.8910 0.3415 13 6 3.5397 -5.8443 0.3294 14 7 4.5415 -6.7798 0.4155 15 1 4.4181 -7.7373 0.5094 16 7 5.6728 -6.1679 0.3501 17 7 5.5218 -4.8959 0.2274 18 6 4.1994 -4.6066 0.2058 19 6 3.4499 -3.4336 0.0943 20 1 -0.4850 0.8401 -0.0004 21 1 0.3491 -4.7790 0.2429 22 1 1.6428 -6.8397 0.4322 23 1 3.9448 -2.4785 -0.0012 RHF calculation, no. of doubly occupied orbitals= 36 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260128370.mol2 23 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:08:11 Heat of formation + Delta-G solvation = 59.114566 kcal Electronic energy + Delta-G solvation = -12393.421856 eV Core-core repulsion = 10015.659239 eV Total energy + Delta-G solvation = -2377.762617 eV No. of doubly occupied orbitals = 36 Molecular weight (most abundant/longest-lived isotopes) = 205.059 amu Computer time = 0.15 seconds Orbital eigenvalues (eV) -43.96060 -40.41908 -37.40979 -34.66771 -34.27471 -31.29160 -30.39883 -27.55615 -24.81832 -23.64715 -23.34659 -20.29357 -19.67718 -18.61380 -17.60217 -17.10484 -16.34623 -16.03340 -15.48270 -15.06601 -14.80693 -13.72458 -13.61100 -13.14137 -12.93112 -12.88142 -12.40131 -12.13331 -12.05628 -11.97457 -11.24454 -10.80575 -9.58869 -8.96164 -8.49952 -6.17037 -0.29327 0.50443 1.38039 1.40629 1.45107 1.54128 1.76940 2.17616 2.66486 3.07155 3.18184 3.39448 3.81045 4.04887 4.19629 4.35903 4.64647 4.96935 5.06843 5.20282 5.33002 5.49959 5.76894 5.98480 6.15594 6.95353 7.34427 7.68130 8.71511 Molecular weight = 205.06amu Principal moments of inertia in cm(-1) A = 0.056245 B = 0.008748 C = 0.007596 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 497.704700 B = 3200.020487 C = 3685.455541 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.909 5.909 2 C -0.012 4.012 3 Si 1.012 2.988 4 H -0.263 1.263 5 H -0.267 1.267 6 H -0.259 1.259 7 C -0.415 4.415 8 H 0.098 0.902 9 O -0.212 6.212 10 C 0.128 3.872 11 C -0.126 4.126 12 C -0.040 4.040 13 C -0.032 4.032 14 N -0.383 5.383 15 H 0.470 0.530 16 N -0.031 5.031 17 N -0.309 5.309 18 C 0.037 3.963 19 C -0.225 4.225 20 H 0.275 0.725 21 H 0.156 0.844 22 H 0.188 0.812 23 H 0.119 0.881 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.214 -11.164 1.029 11.663 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.546 5.546 2 C -0.211 4.211 3 Si 0.832 3.168 4 H -0.188 1.188 5 H -0.192 1.192 6 H -0.183 1.183 7 C -0.491 4.491 8 H 0.115 0.885 9 O -0.116 6.116 10 C 0.074 3.926 11 C -0.148 4.148 12 C -0.061 4.061 13 C -0.152 4.152 14 N -0.117 5.117 15 H 0.321 0.679 16 N -0.013 5.013 17 N -0.187 5.187 18 C -0.087 4.087 19 C -0.250 4.250 20 H 0.085 0.915 21 H 0.173 0.827 22 H 0.205 0.795 23 H 0.137 0.863 Dipole moment (debyes) X Y Z Total from point charges 4.324 -11.036 1.009 11.896 hybrid contribution -0.720 0.552 -0.008 0.907 sum 3.604 -10.485 1.001 11.132 Atomic orbital electron populations 1.70143 1.07701 1.29045 1.47745 1.26454 0.96807 1.02363 0.95510 0.84671 0.77818 0.74993 0.79335 1.18767 1.19162 1.18292 1.21777 0.92506 0.81408 1.53370 0.88462 1.83953 1.35108 1.12262 1.80304 1.19582 0.89908 0.88805 0.94321 1.20410 1.01563 0.88651 1.04181 1.19837 0.87568 0.99740 0.98943 1.19730 0.93415 0.88707 1.13350 1.44530 1.02072 1.11457 1.53648 0.67949 1.77679 1.08848 1.01577 1.13180 1.75484 1.16219 1.04728 1.22278 1.19794 0.90209 0.94618 1.04110 1.19886 0.92625 0.96661 1.15802 0.91546 0.82663 0.79485 0.86288 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -53.43 13.67 21.61 0.30 -53.13 14 2 C -0.01 -0.67 5.49 84.83 0.47 -0.20 14 3 Si 1.01 42.43 29.55 68.60 2.03 44.45 14 4 H -0.26 -10.51 7.11 99.48 0.71 -9.81 14 5 H -0.27 -10.64 7.11 99.48 0.71 -9.93 14 6 H -0.26 -10.43 7.11 99.48 0.71 -9.72 14 7 C -0.41 -23.59 9.48 67.92 0.64 -22.95 14 8 H 0.10 5.28 5.19 -2.91 -0.02 5.26 14 9 O -0.21 -11.95 9.75 -23.03 -0.22 -12.17 14 10 C 0.13 5.94 6.64 22.56 0.15 6.09 14 11 C -0.13 -4.41 9.91 22.19 0.22 -4.19 14 12 C -0.04 -1.06 10.01 22.06 0.22 -0.84 14 13 C -0.03 -1.01 7.41 39.09 0.29 -0.72 14 14 N -0.38 -9.51 7.06 -51.55 -0.36 -9.87 14 15 H 0.47 6.19 8.96 -219.83 -1.97 4.22 14 16 N -0.03 -1.01 13.28 37.02 0.49 -0.52 14 17 N -0.31 -12.55 12.46 -52.27 -0.65 -13.20 14 18 C 0.04 1.51 7.38 39.56 0.29 1.81 14 19 C -0.23 -10.41 9.21 22.59 0.21 -10.21 14 20 H 0.28 14.80 8.31 -92.71 -0.77 14.03 14 21 H 0.16 4.80 8.06 -2.91 -0.02 4.78 14 22 H 0.19 2.79 8.06 -2.92 -0.02 2.76 14 23 H 0.12 5.86 5.61 -2.91 -0.02 5.85 14 Total: -1.00 -71.57 216.83 3.37 -68.20 By element: Atomic # 1 Polarization: 8.14 SS G_CDS: -0.70 Total: 7.44 kcal Atomic # 6 Polarization: -33.70 SS G_CDS: 2.49 Total: -31.21 kcal Atomic # 7 Polarization: -76.49 SS G_CDS: -0.23 Total: -76.72 kcal Atomic # 8 Polarization: -11.95 SS G_CDS: -0.22 Total: -12.17 kcal Atomic # 14 Polarization: 42.43 SS G_CDS: 2.03 Total: 44.45 kcal Total: -71.57 3.37 -68.20 kcal The number of atoms in the molecule is 23 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260128370.mol2 23 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 127.316 kcal (2) G-P(sol) polarization free energy of solvation -71.566 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 55.749 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.365 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.201 kcal (6) G-S(sol) free energy of system = (1) + (5) 59.115 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.15 seconds