Wall clock time and date at job start Mon Mar 30 2020 02:11:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86798 * 119.99973 * 2 1 4 4 H 1.48506 * 109.47297 * 89.99710 * 3 2 1 5 5 H 1.48503 * 109.47261 * 329.99891 * 3 2 1 6 6 H 1.48500 * 109.47454 * 209.99884 * 3 2 1 7 7 C 1.37877 * 120.00089 * 180.02562 * 2 1 3 8 8 H 1.08006 * 119.99721 * 180.02562 * 7 2 1 9 9 S 1.76204 * 120.00238 * 359.97438 * 7 2 1 10 10 O 1.42096 * 104.27513 * 296.07744 * 9 7 2 11 11 O 1.42105 * 104.27225 * 63.93155 * 9 7 2 12 12 C 1.81400 * 104.44934 * 180.02562 * 9 7 2 13 13 H 1.09001 * 110.62762 * 64.30014 * 12 9 7 14 14 C 1.55136 * 110.70427 * 187.40612 * 12 9 7 15 15 C 1.55110 * 101.55880 * 153.90789 * 14 12 9 16 16 N 1.47836 * 104.90782 * 323.15711 * 15 14 12 17 17 C 1.47447 * 108.56711 * 23.97151 * 16 15 14 18 18 H 0.96998 * 119.99255 * 180.02562 * 1 2 3 19 19 H 1.09004 * 110.99126 * 272.13337 * 14 12 9 20 20 H 1.09000 * 110.99174 * 35.94093 * 14 12 9 21 21 H 1.09001 * 110.42259 * 204.23788 * 15 14 12 22 22 H 1.09005 * 110.30894 * 82.02049 * 15 14 12 23 23 H 1.00902 * 111.00132 * 261.70807 * 16 15 14 24 24 H 1.08997 * 109.89363 * 239.60337 * 17 16 15 25 25 H 1.09002 * 109.88895 * 118.41612 * 17 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4966 2.0465 1.4001 5 1 1.4466 2.6527 -0.7001 6 1 3.5467 1.4402 -0.7000 7 6 2.0045 -1.1940 -0.0005 8 1 3.0846 -1.1940 -0.0001 9 16 1.1236 -2.7201 -0.0005 10 8 0.4247 -2.7211 1.2366 11 8 0.4239 -2.7206 -1.2373 12 6 2.4186 -3.9903 -0.0005 13 1 3.0026 -3.9434 0.9187 14 6 1.8025 -5.4017 -0.1876 15 6 2.9859 -6.1753 -0.8257 16 7 3.6432 -5.1967 -1.7177 17 6 3.3317 -3.8386 -1.2353 18 1 -0.4849 -0.8401 0.0004 19 1 1.5210 -5.8352 0.7721 20 1 0.9489 -5.3685 -0.8646 21 1 2.6187 -7.0257 -1.4003 22 1 3.6788 -6.5106 -0.0538 23 1 3.3422 -5.3189 -2.6730 24 1 2.8132 -3.2785 -2.0134 25 1 4.2513 -3.3244 -0.9556 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260161854.mol2 25 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:11:34 Heat of formation + Delta-G solvation = -90.659432 kcal Electronic energy + Delta-G solvation = -12075.329650 eV Core-core repulsion = 9794.223545 eV Total energy + Delta-G solvation = -2281.106105 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 205.056 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -38.09818 -35.44267 -34.57622 -33.10068 -30.07440 -28.88184 -25.48437 -21.52370 -21.20631 -19.16091 -17.45055 -16.58908 -15.71934 -14.65125 -14.53418 -14.05202 -13.93649 -13.57186 -12.78700 -12.38087 -11.86372 -11.41373 -11.32048 -11.06842 -10.97592 -10.86080 -10.65249 -10.55240 -10.30622 -9.66608 -9.14556 -8.44683 -8.40424 -7.14052 -5.36923 1.62942 3.23936 3.26380 3.44784 4.12157 4.33426 4.43085 4.71466 4.82937 5.07082 5.13761 5.29731 5.51036 5.55609 5.64501 5.81940 5.93961 6.14552 6.21586 6.44645 6.86020 7.45930 7.59079 8.08963 8.67059 10.25526 Molecular weight = 205.06amu Principal moments of inertia in cm(-1) A = 0.052903 B = 0.012648 C = 0.011190 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 529.139369 B = 2213.343382 C = 2501.697148 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.842 5.842 2 C 0.090 3.910 3 Si 1.082 2.918 4 H -0.275 1.275 5 H -0.273 1.273 6 H -0.277 1.277 7 C -1.068 5.068 8 H 0.101 0.899 9 S 2.506 3.494 10 O -0.988 6.988 11 O -0.985 6.985 12 C -0.604 4.604 13 H 0.132 0.868 14 C -0.140 4.140 15 C 0.056 3.944 16 N -0.684 5.684 17 C 0.078 3.922 18 H 0.282 0.718 19 H 0.086 0.914 20 H 0.077 0.923 21 H 0.069 0.931 22 H 0.078 0.922 23 H 0.339 0.661 24 H 0.072 0.928 25 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.098 -7.311 -1.629 9.658 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.471 5.471 2 C -0.129 4.129 3 Si 0.905 3.095 4 H -0.201 1.201 5 H -0.198 1.198 6 H -0.203 1.203 7 C -1.203 5.203 8 H 0.120 0.880 9 S 2.692 3.308 10 O -0.985 6.985 11 O -0.982 6.982 12 C -0.711 4.711 13 H 0.151 0.849 14 C -0.179 4.179 15 C -0.074 4.074 16 N -0.312 5.312 17 C -0.051 4.051 18 H 0.094 0.906 19 H 0.105 0.895 20 H 0.095 0.905 21 H 0.087 0.913 22 H 0.096 0.904 23 H 0.154 0.846 24 H 0.091 0.909 25 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges 5.614 -5.967 -1.327 8.300 hybrid contribution 0.130 -1.548 -0.073 1.555 sum 5.744 -7.515 -1.400 9.562 Atomic orbital electron populations 1.70745 1.07255 1.32566 1.36491 1.25945 0.95200 1.03694 0.88040 0.83430 0.75044 0.73151 0.77852 1.20059 1.19812 1.20256 1.31029 1.07395 1.11445 1.70403 0.88028 1.04110 0.75659 0.76815 0.74184 1.93406 1.71742 1.87283 1.46032 1.93405 1.71502 1.87261 1.46050 1.31638 1.18194 1.14152 1.07066 0.84939 1.23017 0.99133 0.93163 1.02609 1.22841 0.93563 0.94525 0.96428 1.61774 1.60370 1.02976 1.06055 1.22280 0.98295 0.90901 0.93654 0.90601 0.89502 0.90480 0.91269 0.90368 0.84572 0.90923 0.89425 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 26. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.84 -25.93 13.63 55.43 0.76 -25.17 15 2 C 0.09 2.56 5.46 -17.82 -0.10 2.47 15 3 Si 1.08 23.94 29.90 -169.99 -5.08 18.85 15 4 H -0.27 -5.75 7.11 56.52 0.40 -5.35 15 5 H -0.27 -5.89 7.11 56.52 0.40 -5.49 15 6 H -0.28 -5.66 7.11 56.52 0.40 -5.25 15 7 C -1.07 -28.96 9.00 30.60 0.28 -28.68 15 8 H 0.10 2.49 7.81 -52.48 -0.41 2.08 15 9 S 2.51 63.38 3.47 -107.50 -0.37 63.01 15 10 O -0.99 -28.03 17.33 -57.54 -1.00 -29.03 15 11 O -0.99 -27.24 16.94 -57.54 -0.97 -28.21 15 12 C -0.60 -11.45 3.53 -24.91 -0.09 -11.54 15 13 H 0.13 2.32 8.14 -51.93 -0.42 1.90 15 14 C -0.14 -2.24 6.56 -24.49 -0.16 -2.40 15 15 C 0.06 0.77 7.57 -2.19 -0.02 0.75 15 16 N -0.68 -10.23 7.39 -110.67 -0.82 -11.04 15 17 C 0.08 1.38 6.88 -2.83 -0.02 1.36 15 18 H 0.28 8.92 6.19 -40.82 -0.25 8.67 15 19 H 0.09 1.24 8.14 -51.93 -0.42 0.81 15 20 H 0.08 1.26 8.04 -51.93 -0.42 0.84 15 21 H 0.07 0.76 8.14 -51.93 -0.42 0.34 15 22 H 0.08 0.99 8.14 -51.93 -0.42 0.57 15 23 H 0.34 4.46 8.91 -39.29 -0.35 4.11 15 24 H 0.07 1.35 7.46 -51.93 -0.39 0.96 15 25 H 0.09 1.46 8.14 -51.93 -0.42 1.04 15 LS Contribution 228.10 15.07 3.44 3.44 Total: -1.00 -34.10 228.10 -6.89 -40.99 By element: Atomic # 1 Polarization: 7.95 SS G_CDS: -2.73 Total: 5.23 kcal Atomic # 6 Polarization: -37.95 SS G_CDS: -0.11 Total: -38.05 kcal Atomic # 7 Polarization: -36.15 SS G_CDS: -0.06 Total: -36.22 kcal Atomic # 8 Polarization: -55.27 SS G_CDS: -1.97 Total: -57.25 kcal Atomic # 14 Polarization: 23.94 SS G_CDS: -5.08 Total: 18.85 kcal Atomic # 16 Polarization: 63.38 SS G_CDS: -0.37 Total: 63.01 kcal Total LS contribution 3.44 Total: 3.44 kcal Total: -34.10 -6.89 -40.99 kcal The number of atoms in the molecule is 25 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260161854.mol2 25 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -49.674 kcal (2) G-P(sol) polarization free energy of solvation -34.100 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -83.774 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.886 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.986 kcal (6) G-S(sol) free energy of system = (1) + (5) -90.659 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds