Wall clock time and date at job start Mon Mar 30 2020 02:11:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86798 * 119.99973 * 2 1 4 4 H 1.48506 * 109.47297 * 89.99710 * 3 2 1 5 5 H 1.48503 * 109.47261 * 329.99891 * 3 2 1 6 6 H 1.48500 * 109.47454 * 209.99884 * 3 2 1 7 7 C 1.37877 * 120.00089 * 180.02562 * 2 1 3 8 8 H 1.08006 * 119.99721 * 180.02562 * 7 2 1 9 9 S 1.76204 * 120.00238 * 359.97438 * 7 2 1 10 10 O 1.42096 * 104.27513 * 296.07744 * 9 7 2 11 11 O 1.42105 * 104.27225 * 63.93155 * 9 7 2 12 12 C 1.81400 * 104.44934 * 180.02562 * 9 7 2 13 13 H 1.09001 * 110.62762 * 64.30014 * 12 9 7 14 14 C 1.55136 * 110.70427 * 187.40612 * 12 9 7 15 15 C 1.55110 * 101.55880 * 153.90789 * 14 12 9 16 16 N 1.47836 * 104.90782 * 323.15711 * 15 14 12 17 17 C 1.47447 * 108.56711 * 23.97151 * 16 15 14 18 18 H 0.96998 * 119.99255 * 180.02562 * 1 2 3 19 19 H 1.09004 * 110.99126 * 272.13337 * 14 12 9 20 20 H 1.09000 * 110.99174 * 35.94093 * 14 12 9 21 21 H 1.09001 * 110.42259 * 204.23788 * 15 14 12 22 22 H 1.09005 * 110.30894 * 82.02049 * 15 14 12 23 23 H 1.00902 * 111.00132 * 261.70807 * 16 15 14 24 24 H 1.08997 * 109.89363 * 239.60337 * 17 16 15 25 25 H 1.09002 * 109.88895 * 118.41612 * 17 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4966 2.0465 1.4001 5 1 1.4466 2.6527 -0.7001 6 1 3.5467 1.4402 -0.7000 7 6 2.0045 -1.1940 -0.0005 8 1 3.0846 -1.1940 -0.0001 9 16 1.1236 -2.7201 -0.0005 10 8 0.4247 -2.7211 1.2366 11 8 0.4239 -2.7206 -1.2373 12 6 2.4186 -3.9903 -0.0005 13 1 3.0026 -3.9434 0.9187 14 6 1.8025 -5.4017 -0.1876 15 6 2.9859 -6.1753 -0.8257 16 7 3.6432 -5.1967 -1.7177 17 6 3.3317 -3.8386 -1.2353 18 1 -0.4849 -0.8401 0.0004 19 1 1.5210 -5.8352 0.7721 20 1 0.9489 -5.3685 -0.8646 21 1 2.6187 -7.0257 -1.4003 22 1 3.6788 -6.5106 -0.0538 23 1 3.3422 -5.3189 -2.6730 24 1 2.8132 -3.2785 -2.0134 25 1 4.2513 -3.3244 -0.9556 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260161854.mol2 25 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:11:34 Heat of formation + Delta-G solvation = -120.084516 kcal Electronic energy + Delta-G solvation = -12076.605617 eV Core-core repulsion = 9794.223545 eV Total energy + Delta-G solvation = -2282.382072 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 205.056 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -39.40054 -37.53487 -36.67594 -35.23833 -31.42386 -30.19044 -27.59727 -22.78346 -22.69139 -21.17811 -19.25471 -18.27893 -17.16832 -16.72218 -16.18725 -15.91507 -15.67102 -14.88908 -14.42134 -14.00388 -13.27129 -13.02534 -12.98960 -12.74608 -12.72984 -12.68911 -12.62710 -12.11021 -11.94862 -11.41052 -11.16637 -10.46729 -9.62952 -9.35538 -7.58240 -0.29277 1.45953 1.52477 1.75600 2.31548 2.63563 2.82099 3.11562 3.20409 3.40164 3.50058 3.95574 4.10153 4.16861 4.35951 4.54348 4.59792 4.78580 4.83979 5.03451 5.42081 5.64115 5.84777 6.35956 6.56734 8.01238 Molecular weight = 205.06amu Principal moments of inertia in cm(-1) A = 0.052903 B = 0.012648 C = 0.011190 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 529.139369 B = 2213.343382 C = 2501.697148 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.880 5.880 2 C 0.032 3.968 3 Si 1.121 2.879 4 H -0.256 1.256 5 H -0.271 1.271 6 H -0.246 1.246 7 C -1.085 5.085 8 H 0.125 0.875 9 S 2.489 3.511 10 O -1.032 7.032 11 O -1.023 7.023 12 C -0.575 4.575 13 H 0.155 0.845 14 C -0.149 4.149 15 C 0.061 3.939 16 N -0.679 5.679 17 C 0.075 3.925 18 H 0.260 0.740 19 H 0.107 0.893 20 H 0.068 0.932 21 H 0.101 0.899 22 H 0.095 0.905 23 H 0.350 0.650 24 H 0.056 0.944 25 H 0.101 0.899 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.626 -8.382 -1.733 12.152 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.510 5.510 2 C -0.178 4.178 3 Si 0.935 3.065 4 H -0.181 1.181 5 H -0.195 1.195 6 H -0.169 1.169 7 C -1.219 5.219 8 H 0.143 0.857 9 S 2.683 3.317 10 O -1.029 7.029 11 O -1.020 7.020 12 C -0.688 4.688 13 H 0.173 0.827 14 C -0.189 4.189 15 C -0.069 4.069 16 N -0.308 5.308 17 C -0.055 4.055 18 H 0.071 0.929 19 H 0.125 0.875 20 H 0.087 0.913 21 H 0.119 0.881 22 H 0.113 0.887 23 H 0.166 0.834 24 H 0.074 0.926 25 H 0.119 0.881 Dipole moment (debyes) X Y Z Total from point charges 8.102 -7.014 -1.435 10.812 hybrid contribution -0.589 -1.375 -0.057 1.497 sum 7.512 -8.389 -1.492 11.360 Atomic orbital electron populations 1.70896 1.08749 1.31240 1.40132 1.27793 0.95148 1.08449 0.86456 0.83059 0.75078 0.68949 0.79366 1.18058 1.19532 1.16907 1.31518 1.08872 1.12680 1.68806 0.85711 1.04102 0.76882 0.77954 0.72746 1.93344 1.73998 1.88430 1.47135 1.93349 1.73545 1.88308 1.46786 1.31244 1.15615 1.12674 1.09237 0.82711 1.23262 1.00071 0.91463 1.04078 1.22991 0.92450 0.94574 0.96872 1.61802 1.60357 1.01624 1.07035 1.22337 0.98099 0.92680 0.92381 0.92861 0.87484 0.91282 0.88088 0.88650 0.83380 0.92590 0.88127 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 32. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -56.10 13.63 21.45 0.29 -55.81 15 2 C 0.03 1.81 5.46 84.65 0.46 2.27 15 3 Si 1.12 47.05 29.90 68.60 2.05 49.10 15 4 H -0.26 -9.90 7.11 99.48 0.71 -9.20 15 5 H -0.27 -11.13 7.11 99.48 0.71 -10.43 15 6 H -0.25 -8.98 7.11 99.48 0.71 -8.27 15 7 C -1.09 -58.91 9.00 67.73 0.61 -58.30 15 8 H 0.12 5.93 7.81 -2.91 -0.02 5.91 15 9 S 2.49 127.92 3.47 -56.49 -0.20 127.72 15 10 O -1.03 -60.47 17.33 -127.65 -2.21 -62.68 15 11 O -1.02 -58.56 16.94 -127.65 -2.16 -60.72 15 12 C -0.57 -20.56 3.53 31.77 0.11 -20.44 15 13 H 0.15 4.93 8.14 -2.39 -0.02 4.91 15 14 C -0.15 -4.37 6.56 32.05 0.21 -4.16 15 15 C 0.06 1.37 7.57 86.85 0.66 2.03 15 16 N -0.68 -17.75 7.39 -504.06 -3.73 -21.47 15 17 C 0.08 2.45 6.88 86.65 0.60 3.05 15 18 H 0.26 17.40 6.19 -92.71 -0.57 16.82 15 19 H 0.11 2.71 8.14 -2.38 -0.02 2.69 15 20 H 0.07 2.15 8.04 -2.39 -0.02 2.13 15 21 H 0.10 1.71 8.14 -2.39 -0.02 1.69 15 22 H 0.10 1.91 8.14 -2.38 -0.02 1.89 15 23 H 0.35 8.01 8.91 -89.69 -0.80 7.21 15 24 H 0.06 2.02 7.46 -2.39 -0.02 2.00 15 25 H 0.10 3.03 8.14 -2.39 -0.02 3.01 15 Total: -1.00 -76.34 228.10 -2.71 -79.05 By element: Atomic # 1 Polarization: 19.76 SS G_CDS: 0.59 Total: 20.35 kcal Atomic # 6 Polarization: -78.20 SS G_CDS: 2.65 Total: -75.55 kcal Atomic # 7 Polarization: -73.84 SS G_CDS: -3.43 Total: -77.28 kcal Atomic # 8 Polarization: -119.03 SS G_CDS: -4.37 Total: -123.40 kcal Atomic # 14 Polarization: 47.05 SS G_CDS: 2.05 Total: 49.10 kcal Atomic # 16 Polarization: 127.92 SS G_CDS: -0.20 Total: 127.72 kcal Total: -76.34 -2.71 -79.05 kcal The number of atoms in the molecule is 25 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260161854.mol2 25 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -41.033 kcal (2) G-P(sol) polarization free energy of solvation -76.338 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -117.370 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.714 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.052 kcal (6) G-S(sol) free energy of system = (1) + (5) -120.085 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds