Wall clock time and date at job start Mon Mar 30 2020 02:04:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31553 * 1 3 3 Si 1.86795 * 119.99973 * 2 1 4 4 H 1.48493 * 109.47456 * 270.00059 * 3 2 1 5 5 H 1.48502 * 109.47125 * 30.00367 * 3 2 1 6 6 H 1.48504 * 109.46901 * 150.00074 * 3 2 1 7 7 C 1.38657 * 119.99757 * 180.02562 * 2 1 3 8 8 H 1.07997 * 119.99937 * 180.02562 * 7 2 1 9 9 O 1.34810 * 120.00282 * 0.26942 * 7 2 1 10 10 C 1.35583 * 117.00197 * 174.66456 * 9 7 2 11 11 C 1.38469 * 120.24004 * 5.60090 * 10 9 7 12 12 C 1.38519 * 120.28022 * 179.72999 * 11 10 9 13 13 C 1.37950 * 120.70122 * 0.57483 * 12 11 10 14 14 C 1.38938 * 120.09585 * 359.70026 * 13 12 11 15 15 O 1.34861 * 133.33846 * 180.02562 * 14 13 12 16 16 N 1.41352 * 109.30644 * 179.97438 * 15 14 13 17 17 C 1.29815 * 109.71197 * 0.02562 * 16 15 14 18 18 C 1.40282 * 120.23964 * 185.87902 * 10 9 7 19 19 H 0.96999 * 119.99697 * 359.97438 * 1 2 3 20 20 H 1.08000 * 119.85481 * 0.02562 * 11 10 9 21 21 H 1.08007 * 119.64773 * 180.25174 * 12 11 10 22 22 H 1.08001 * 119.95456 * 179.68181 * 13 12 11 23 23 H 1.08000 * 126.28681 * 180.02562 * 17 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3155 0.0000 0.0000 3 14 2.2495 1.6177 0.0000 4 1 2.4970 2.0464 -1.4000 5 1 1.4470 2.6526 0.7001 6 1 3.5471 1.4401 0.7000 7 6 2.0088 -1.2008 -0.0005 8 1 3.0887 -1.2009 -0.0001 9 8 1.3347 -2.3683 -0.0065 10 6 2.0691 -3.5025 -0.1191 11 6 3.4524 -3.4419 -0.1051 12 6 4.2034 -4.6007 -0.2143 13 6 3.5887 -5.8282 -0.3503 14 6 2.2022 -5.9144 -0.3727 15 8 1.3407 -6.9453 -0.4898 16 7 0.0159 -6.4541 -0.4501 17 6 0.0314 -5.1632 -0.3140 18 6 1.4330 -4.7453 -0.2564 19 1 -0.4850 0.8401 0.0004 20 1 3.9477 -2.4876 -0.0037 21 1 5.2817 -4.5420 -0.1981 22 1 4.1861 -6.7235 -0.4397 23 1 -0.8314 -4.5165 -0.2533 RHF calculation, no. of doubly occupied orbitals= 36 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260190329.mol2 23 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:04:27 Heat of formation + Delta-G solvation = 15.849017 kcal Electronic energy + Delta-G solvation = -12483.476498 eV Core-core repulsion = 10071.544995 eV Total energy + Delta-G solvation = -2411.931503 eV No. of doubly occupied orbitals = 36 Molecular weight (most abundant/longest-lived isotopes) = 205.053 amu Computer time = 0.16 seconds Orbital eigenvalues (eV) -42.58606 -40.29631 -37.47021 -34.70599 -34.21540 -31.03600 -30.26573 -27.46525 -24.15014 -23.66771 -22.73951 -20.19506 -19.14609 -17.95222 -17.21599 -16.94531 -16.38590 -15.89595 -15.50459 -15.23571 -14.75087 -14.21354 -13.67174 -13.25311 -12.91655 -12.59957 -12.47236 -12.38061 -12.15283 -12.09175 -11.47010 -10.82711 -9.83258 -9.00195 -8.55832 -6.23380 -0.17988 0.46280 1.16592 1.38893 1.47743 1.55987 1.65879 2.13026 2.66157 3.00737 3.11241 3.46888 3.60236 3.91513 4.18537 4.44067 4.59464 4.77607 4.88275 5.08068 5.22569 5.42067 5.54722 5.80040 5.90538 6.29004 6.87934 7.57365 8.65082 Molecular weight = 205.05amu Principal moments of inertia in cm(-1) A = 0.050716 B = 0.009672 C = 0.008154 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 551.963204 B = 2894.192354 C = 3432.910300 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.907 5.907 2 C -0.013 4.013 3 Si 1.020 2.980 4 H -0.264 1.264 5 H -0.273 1.273 6 H -0.248 1.248 7 C -0.418 4.418 8 H 0.115 0.885 9 O -0.203 6.203 10 C 0.192 3.808 11 C -0.279 4.279 12 C 0.006 3.994 13 C -0.212 4.212 14 C 0.112 3.888 15 O -0.120 6.120 16 N -0.332 5.332 17 C 0.138 3.862 18 C -0.291 4.291 19 H 0.277 0.723 20 H 0.142 0.858 21 H 0.178 0.822 22 H 0.161 0.839 23 H 0.220 0.780 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.805 -3.224 -0.262 8.449 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.542 5.542 2 C -0.213 4.213 3 Si 0.839 3.161 4 H -0.188 1.188 5 H -0.198 1.198 6 H -0.171 1.171 7 C -0.494 4.494 8 H 0.132 0.868 9 O -0.105 6.105 10 C 0.136 3.864 11 C -0.299 4.299 12 C -0.013 4.013 13 C -0.232 4.232 14 C 0.058 3.942 15 O -0.127 6.127 16 N -0.081 5.081 17 C -0.061 4.061 18 C -0.297 4.297 19 H 0.086 0.914 20 H 0.160 0.840 21 H 0.195 0.805 22 H 0.178 0.822 23 H 0.237 0.763 Dipole moment (debyes) X Y Z Total from point charges 6.703 -4.204 -0.363 7.920 hybrid contribution 0.131 1.452 0.097 1.461 sum 6.834 -2.752 -0.267 7.372 Atomic orbital electron populations 1.70154 1.08091 1.29393 1.46591 1.26638 0.96822 1.02797 0.95046 0.84553 0.78044 0.74195 0.79309 1.18850 1.19833 1.17131 1.22014 0.93139 0.80592 1.53617 0.86825 1.83873 1.36322 1.12644 1.77655 1.19207 0.91468 0.85497 0.90274 1.21268 0.91827 1.01268 1.15512 1.21228 1.01344 0.89175 0.89562 1.20048 0.87530 1.00411 1.15203 1.20428 0.93546 0.85583 0.94615 1.88992 1.12964 1.29160 1.81588 1.79739 0.92679 1.11766 1.23882 1.26177 0.97757 0.92709 0.89411 1.20203 0.92323 0.93567 1.23573 0.91399 0.84021 0.80456 0.82180 0.76331 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -51.20 13.67 21.61 0.30 -50.90 14 2 C -0.01 -0.67 5.49 84.83 0.47 -0.20 14 3 Si 1.02 38.83 29.55 68.60 2.03 40.85 14 4 H -0.26 -9.62 7.11 99.48 0.71 -8.91 14 5 H -0.27 -10.18 7.11 99.48 0.71 -9.47 14 6 H -0.25 -8.62 7.11 99.48 0.71 -7.92 14 7 C -0.42 -21.98 9.49 67.92 0.64 -21.33 14 8 H 0.11 5.32 5.21 -2.91 -0.02 5.31 14 9 O -0.20 -11.07 9.76 -20.69 -0.20 -11.27 14 10 C 0.19 8.90 6.68 22.82 0.15 9.05 14 11 C -0.28 -10.77 9.16 22.39 0.21 -10.57 14 12 C 0.01 0.17 10.01 22.27 0.22 0.40 14 13 C -0.21 -6.65 10.06 22.37 0.23 -6.42 14 14 C 0.11 4.39 7.48 22.97 0.17 4.56 14 15 O -0.12 -4.88 12.07 29.47 0.36 -4.52 14 16 N -0.33 -13.41 12.82 -52.97 -0.68 -14.09 14 17 C 0.14 5.55 12.31 87.11 1.07 6.62 14 18 C -0.29 -12.68 6.30 -20.13 -0.13 -12.81 14 19 H 0.28 14.34 8.31 -92.71 -0.77 13.57 14 20 H 0.14 5.27 5.63 -2.91 -0.02 5.25 14 21 H 0.18 3.48 8.06 -2.91 -0.02 3.46 14 22 H 0.16 3.83 8.06 -2.91 -0.02 3.81 14 23 H 0.22 7.80 8.06 -2.91 -0.02 7.77 14 Total: -1.00 -63.85 219.49 6.08 -57.77 By element: Atomic # 1 Polarization: 11.62 SS G_CDS: 1.25 Total: 12.87 kcal Atomic # 6 Polarization: -33.74 SS G_CDS: 3.03 Total: -30.71 kcal Atomic # 7 Polarization: -64.61 SS G_CDS: -0.38 Total: -64.99 kcal Atomic # 8 Polarization: -15.95 SS G_CDS: 0.15 Total: -15.79 kcal Atomic # 14 Polarization: 38.83 SS G_CDS: 2.03 Total: 40.85 kcal Total: -63.85 6.08 -57.77 kcal The number of atoms in the molecule is 23 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260190329.mol2 23 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 73.622 kcal (2) G-P(sol) polarization free energy of solvation -63.852 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 9.770 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.079 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.773 kcal (6) G-S(sol) free energy of system = (1) + (5) 15.849 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.16 seconds