Wall clock time and date at job start Mon Mar 30 2020 02:16:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46504 * 1 3 3 C 1.36931 * 119.99634 * 2 1 4 4 H 1.08004 * 119.99906 * 162.12313 * 3 2 1 5 5 C 1.38816 * 120.00312 * 341.84412 * 3 2 1 6 6 N 1.31618 * 119.99471 * 344.63101 * 5 3 2 7 7 Si 1.86796 * 120.00312 * 164.63762 * 5 3 2 8 8 H 1.48503 * 109.47004 * 359.97438 * 7 5 3 9 9 H 1.48497 * 109.47088 * 119.99600 * 7 5 3 10 10 H 1.48498 * 109.47228 * 240.00069 * 7 5 3 11 11 C 1.46491 * 119.99916 * 179.97438 * 2 1 3 12 12 C 1.53046 * 113.15392 * 40.37907 * 11 2 1 13 13 S 1.81431 * 89.89010 * 211.84933 * 12 11 2 14 14 O 1.42094 * 112.75126 * 280.47407 * 13 12 11 15 15 O 1.42098 * 112.83129 * 136.71024 * 13 12 11 16 16 C 1.53042 * 113.15879 * 300.00027 * 11 2 1 17 17 H 1.08997 * 109.47402 * 84.85124 * 1 2 3 18 18 H 1.09007 * 109.47151 * 204.84513 * 1 2 3 19 19 H 1.09004 * 109.47544 * 324.84332 * 1 2 3 20 20 H 0.97002 * 119.99951 * 179.97438 * 6 5 3 21 21 H 1.09003 * 112.49550 * 170.21767 * 11 2 1 22 22 H 1.09000 * 113.14229 * 327.10569 * 12 11 2 23 23 H 1.08996 * 113.15281 * 96.58947 * 12 11 2 24 24 H 1.08996 * 113.14982 * 263.41177 * 16 11 2 25 25 H 1.09007 * 113.14218 * 32.88536 * 16 11 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1496 1.1859 0.0000 4 1 3.1905 1.2085 0.2871 5 6 1.5074 2.3582 -0.3746 6 7 0.3563 2.3035 -1.0105 7 14 2.2768 4.0131 0.0236 8 1 3.5614 3.8025 0.7383 9 1 2.5270 4.7585 -1.2361 10 1 1.3534 4.7936 0.8858 11 6 2.1975 -1.2687 0.0006 12 6 1.5700 -2.3262 -0.9106 13 16 2.1426 -3.6298 0.2140 14 8 3.5165 -3.9450 0.0356 15 8 1.1575 -4.6265 0.4496 16 6 1.8891 -2.1411 1.2195 17 1 -0.3634 0.0922 -1.0235 18 1 -0.3634 -0.9326 0.4318 19 1 -0.3634 0.8402 0.5917 20 1 -0.0928 3.1226 -1.2719 21 1 3.2655 -1.1337 -0.1706 22 1 0.4838 -2.2543 -0.9655 23 1 2.0356 -2.3745 -1.8949 24 1 2.6219 -2.0344 2.0193 25 1 0.8643 -2.0335 1.5752 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260231849.mol2 25 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:16:20 Heat of formation + Delta-G solvation = -44.126134 kcal Electronic energy + Delta-G solvation = -11887.969621 eV Core-core repulsion = 9608.881351 eV Total energy + Delta-G solvation = -2279.088270 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 205.056 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -38.89355 -38.18717 -37.01121 -35.22372 -32.02489 -28.14364 -27.31960 -25.35487 -21.34657 -19.61196 -19.02063 -17.73263 -17.23386 -16.93547 -16.43976 -15.78717 -15.10780 -14.58072 -14.41980 -13.91137 -13.24727 -13.21114 -13.01337 -12.88995 -12.56093 -12.44507 -12.26863 -12.08693 -11.87465 -11.46743 -11.12001 -10.67050 -8.91927 -7.89058 -5.33820 -0.65646 1.19053 1.46842 1.48865 1.58899 2.47994 2.87418 3.17581 3.22385 3.72105 3.80959 4.04257 4.19167 4.45352 4.71799 4.81418 5.10157 5.16951 5.37728 5.59737 5.70896 6.24006 7.08102 7.78646 8.21166 9.14514 Molecular weight = 205.06amu Principal moments of inertia in cm(-1) A = 0.076500 B = 0.009147 C = 0.008625 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 365.924728 B = 3060.544125 C = 3245.665977 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.168 3.832 2 N -0.586 5.586 3 C -0.274 4.274 4 H 0.081 0.919 5 C -0.052 4.052 6 N -0.937 5.937 7 Si 0.971 3.029 8 H -0.264 1.264 9 H -0.293 1.293 10 H -0.292 1.292 11 C 0.181 3.819 12 C -0.616 4.616 13 S 2.461 3.539 14 O -0.945 6.945 15 O -0.959 6.959 16 C -0.612 4.612 17 H 0.009 0.991 18 H 0.041 0.959 19 H 0.021 0.979 20 H 0.250 0.750 21 H 0.110 0.890 22 H 0.137 0.863 23 H 0.127 0.873 24 H 0.134 0.866 25 H 0.139 0.861 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.523 -8.687 2.882 9.494 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C 0.023 3.977 2 N -0.306 5.306 3 C -0.404 4.404 4 H 0.099 0.901 5 C -0.248 4.248 6 N -0.583 5.583 7 Si 0.800 3.200 8 H -0.188 1.188 9 H -0.220 1.220 10 H -0.218 1.218 11 C 0.069 3.931 12 C -0.747 4.747 13 S 2.643 3.357 14 O -0.942 6.942 15 O -0.956 6.956 16 C -0.745 4.745 17 H 0.027 0.973 18 H 0.059 0.941 19 H 0.040 0.960 20 H 0.059 0.941 21 H 0.128 0.872 22 H 0.155 0.845 23 H 0.146 0.854 24 H 0.152 0.848 25 H 0.158 0.842 Dipole moment (debyes) X Y Z Total from point charges 2.755 -9.713 2.875 10.498 hybrid contribution -0.314 2.271 -0.143 2.297 sum 2.441 -7.442 2.732 8.295 Atomic orbital electron populations 1.20651 0.82237 0.96631 0.98136 1.43960 1.02216 1.00596 1.83874 1.19762 0.96529 0.85642 1.38503 0.90086 1.25750 0.98343 1.01741 0.98916 1.70273 1.18916 1.27075 1.42034 0.85141 0.78084 0.79680 0.77131 1.18847 1.21996 1.21845 1.20822 0.96943 0.85349 0.89989 1.31624 1.11957 1.16198 1.14967 1.06582 0.73520 0.74845 0.80727 1.93636 1.32196 1.84794 1.83620 1.93563 1.61042 1.58397 1.82598 1.31578 1.11656 1.19054 1.12218 0.97291 0.94064 0.95992 0.94116 0.87204 0.84465 0.85405 0.84756 0.84239 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 28. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.17 7.85 7.73 127.77 0.99 8.84 15 2 N -0.59 -27.65 3.11 -740.64 -2.30 -29.95 15 3 C -0.27 -14.44 9.69 84.04 0.81 -13.63 15 4 H 0.08 4.07 7.88 -2.91 -0.02 4.05 15 5 C -0.05 -2.83 5.07 84.86 0.43 -2.40 15 6 N -0.94 -53.92 10.56 21.65 0.23 -53.69 15 7 Si 0.97 43.74 29.58 68.60 2.03 45.77 15 8 H -0.26 -11.21 7.11 99.48 0.71 -10.51 15 9 H -0.29 -13.25 7.11 99.48 0.71 -12.54 15 10 H -0.29 -13.18 7.11 99.48 0.71 -12.47 15 11 C 0.18 6.46 4.00 45.02 0.18 6.64 15 12 C -0.62 -17.78 7.38 72.00 0.53 -17.25 15 13 S 2.46 60.09 7.55 -56.49 -0.43 59.66 15 14 O -0.95 -27.55 18.18 -127.87 -2.32 -29.87 15 15 O -0.96 -28.02 18.18 -127.87 -2.32 -30.34 15 16 C -0.61 -16.65 7.52 72.00 0.54 -16.11 15 17 H 0.01 0.45 7.46 -2.39 -0.02 0.43 15 18 H 0.04 1.56 6.05 -2.38 -0.01 1.55 15 19 H 0.02 1.12 7.07 -2.38 -0.02 1.10 15 20 H 0.25 13.95 8.31 -92.71 -0.77 13.18 15 21 H 0.11 3.76 8.04 -2.39 -0.02 3.74 15 22 H 0.14 4.04 6.67 -2.39 -0.02 4.02 15 23 H 0.13 3.36 8.14 -2.39 -0.02 3.34 15 24 H 0.13 3.14 8.14 -2.39 -0.02 3.12 15 25 H 0.14 3.78 6.83 -2.38 -0.02 3.76 15 Total: -1.00 -69.11 224.44 -0.45 -69.56 By element: Atomic # 1 Polarization: 1.58 SS G_CDS: 1.19 Total: 2.77 kcal Atomic # 6 Polarization: -37.39 SS G_CDS: 3.48 Total: -33.91 kcal Atomic # 7 Polarization: -81.57 SS G_CDS: -2.07 Total: -83.64 kcal Atomic # 8 Polarization: -55.57 SS G_CDS: -4.65 Total: -60.22 kcal Atomic # 14 Polarization: 43.74 SS G_CDS: 2.03 Total: 45.77 kcal Atomic # 16 Polarization: 60.09 SS G_CDS: -0.43 Total: 59.66 kcal Total: -69.11 -0.45 -69.56 kcal The number of atoms in the molecule is 25 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260231849.mol2 25 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 25.429 kcal (2) G-P(sol) polarization free energy of solvation -69.109 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -43.680 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.447 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.555 kcal (6) G-S(sol) free energy of system = (1) + (5) -44.126 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds