Wall clock time and date at job start Mon Mar 30 2020 02:02:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30820 * 1 3 3 Si 1.86808 * 119.99735 * 2 1 4 4 H 1.48495 * 109.47078 * 89.99748 * 3 2 1 5 5 H 1.48494 * 109.47068 * 210.00175 * 3 2 1 6 6 H 1.48496 * 109.46895 * 329.99892 * 3 2 1 7 7 C 1.40018 * 120.00285 * 179.97438 * 2 1 3 8 8 H 1.07995 * 120.00371 * 17.53817 * 7 2 1 9 9 C 1.40631 * 119.99944 * 197.54340 * 7 2 1 10 10 C 1.40476 * 120.97184 * 28.20613 * 9 7 2 11 11 N 1.31488 * 120.76353 * 179.97438 * 10 9 7 12 12 C 1.31719 * 123.02691 * 0.02562 * 11 10 9 13 13 C 1.39362 * 121.98180 * 0.02562 * 12 11 10 14 14 S 1.75892 * 131.44464 * 179.97438 * 13 12 11 15 15 C 1.75570 * 91.50913 * 179.41008 * 14 13 12 16 16 C 1.32899 * 110.68624 * 0.43689 * 15 14 13 17 17 C 1.39548 * 115.74274 * 359.52419 * 16 15 14 18 18 H 0.97002 * 119.99830 * 175.45350 * 1 2 3 19 19 H 1.07998 * 119.62055 * 0.02562 * 10 9 7 20 20 H 1.07994 * 119.00699 * 179.97438 * 12 11 10 21 21 H 1.08002 * 124.65307 * 179.97438 * 15 14 13 22 22 H 1.08002 * 122.12653 * 179.50483 * 16 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3082 0.0000 0.0000 3 14 2.2422 1.6178 0.0000 4 1 2.4896 2.0465 1.4000 5 1 3.5396 1.4403 -0.7000 6 1 1.4396 2.6527 -0.7000 7 6 2.0083 -1.2126 0.0005 8 1 1.5061 -2.1263 -0.2809 9 6 3.3656 -1.2406 0.3677 10 6 3.8932 -0.2915 1.2587 11 7 5.1628 -0.3218 1.5996 12 6 6.0081 -1.2217 1.1405 13 6 5.6137 -2.2181 0.2495 14 16 6.5148 -3.5234 -0.5107 15 6 5.0779 -4.0924 -1.3439 16 6 4.0318 -3.3265 -1.0520 17 6 4.2783 -2.2745 -0.1690 18 1 -0.4850 -0.8374 -0.0666 19 1 3.2485 0.4716 1.6692 20 1 7.0379 -1.1858 1.4637 21 1 5.0499 -4.9431 -2.0086 22 1 3.0531 -3.5067 -1.4719 RHF calculation, no. of doubly occupied orbitals= 33 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260414271.mol2 22 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:02:17 Heat of formation + Delta-G solvation = 18.382319 kcal Electronic energy + Delta-G solvation = -10638.959331 eV Core-core repulsion = 8669.890551 eV Total energy + Delta-G solvation = -1969.068780 eV No. of doubly occupied orbitals = 33 Molecular weight (most abundant/longest-lived isotopes) = 205.026 amu Computer time = 0.14 seconds Orbital eigenvalues (eV) -40.56854 -36.78826 -36.17902 -32.56901 -30.82754 -27.12991 -25.16963 -23.24105 -21.62831 -20.62093 -18.54946 -17.29693 -16.97800 -16.01479 -15.54934 -15.00832 -14.88780 -14.63555 -14.27229 -13.39014 -13.00901 -12.84402 -12.47319 -12.13016 -11.80847 -11.70253 -11.24310 -10.40423 -10.19422 -9.77621 -9.56887 -8.77445 -6.72786 -0.14030 0.42178 0.74011 1.13566 1.33086 1.41497 1.65761 1.74007 2.03303 2.45377 3.30187 3.91728 3.97805 4.23683 4.42969 4.62566 4.83687 4.87829 5.03831 5.23004 5.51261 5.55582 5.56174 5.98762 6.18410 6.42264 7.48083 7.71842 Molecular weight = 205.03amu Principal moments of inertia in cm(-1) A = 0.046208 B = 0.012844 C = 0.010677 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 605.811720 B = 2179.447302 C = 2621.949706 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.799 5.799 2 C 0.022 3.978 3 Si 1.099 2.901 4 H -0.255 1.255 5 H -0.276 1.276 6 H -0.266 1.266 7 C -0.486 4.486 8 H 0.071 0.929 9 C 0.068 3.932 10 C -0.094 4.094 11 N -0.443 5.443 12 C -0.015 4.015 13 C -0.156 4.156 14 S 0.113 5.887 15 C -0.222 4.222 16 C -0.107 4.107 17 C -0.169 4.169 18 H 0.291 0.709 19 H 0.141 0.859 20 H 0.158 0.842 21 H 0.196 0.804 22 H 0.133 0.867 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.685 -3.901 -2.708 8.200 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.419 5.419 2 C -0.199 4.199 3 Si 0.920 3.080 4 H -0.180 1.180 5 H -0.201 1.201 6 H -0.192 1.192 7 C -0.514 4.514 8 H 0.089 0.911 9 C 0.061 3.939 10 C -0.253 4.253 11 N -0.151 5.151 12 C -0.181 4.181 13 C -0.274 4.274 14 S 0.373 5.627 15 C -0.357 4.357 16 C -0.137 4.137 17 C -0.183 4.183 18 H 0.102 0.898 19 H 0.157 0.843 20 H 0.175 0.825 21 H 0.213 0.787 22 H 0.150 0.850 Dipole moment (debyes) X Y Z Total from point charges 8.079 -2.227 -2.097 8.638 hybrid contribution -2.149 -2.050 -0.609 3.032 sum 5.930 -4.277 -2.706 7.796 Atomic orbital electron populations 1.70565 1.08241 1.33637 1.29473 1.28273 0.95729 1.06362 0.89497 0.83235 0.74253 0.71075 0.79422 1.18042 1.20147 1.19208 1.20642 0.94902 0.97101 1.38802 0.91058 1.19696 0.92972 0.91083 0.90106 1.22327 0.92586 1.05308 1.05121 1.66632 1.04235 1.22118 1.22104 1.21487 0.99461 0.94779 1.02416 1.23830 0.97655 1.02295 1.03609 1.83238 1.11233 1.23840 1.44347 1.25451 0.95000 1.06539 1.08743 1.19732 1.00487 0.94652 0.98790 1.19673 0.93001 1.01926 1.03658 0.89772 0.84262 0.82525 0.78696 0.84952 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.80 -40.03 13.65 21.84 0.30 -39.73 14 2 C 0.02 1.07 5.43 85.28 0.46 1.53 14 3 Si 1.10 47.26 24.90 68.60 1.71 48.97 14 4 H -0.25 -10.38 6.45 99.48 0.64 -9.74 14 5 H -0.28 -12.44 7.01 99.48 0.70 -11.75 14 6 H -0.27 -10.59 7.11 99.48 0.71 -9.88 14 7 C -0.49 -25.27 9.30 23.29 0.22 -25.05 14 8 H 0.07 3.78 8.02 -2.91 -0.02 3.75 14 9 C 0.07 3.53 5.34 -19.56 -0.10 3.42 14 10 C -0.09 -4.78 8.47 85.29 0.72 -4.06 14 11 N -0.44 -21.58 10.25 -193.45 -1.98 -23.57 14 12 C -0.01 -0.66 11.17 84.98 0.95 0.29 14 13 C -0.16 -6.76 6.53 22.98 0.15 -6.61 14 14 S 0.11 3.68 23.29 -56.49 -1.32 2.36 14 15 C -0.22 -7.18 11.12 66.64 0.74 -6.44 14 16 C -0.11 -4.30 9.88 21.41 0.21 -4.09 14 17 C -0.17 -8.01 6.05 -19.94 -0.12 -8.13 14 18 H 0.29 14.15 8.73 -92.71 -0.81 13.34 14 19 H 0.14 6.84 4.33 -2.91 -0.01 6.82 14 20 H 0.16 5.79 8.06 -2.91 -0.02 5.77 14 21 H 0.20 4.60 8.06 -2.91 -0.02 4.57 14 22 H 0.13 5.12 8.02 -2.91 -0.02 5.10 14 Total: -1.00 -56.17 211.16 3.07 -53.10 By element: Atomic # 1 Polarization: 6.86 SS G_CDS: 1.13 Total: 7.99 kcal Atomic # 6 Polarization: -52.36 SS G_CDS: 3.23 Total: -49.13 kcal Atomic # 7 Polarization: -61.61 SS G_CDS: -1.69 Total: -63.30 kcal Atomic # 14 Polarization: 47.26 SS G_CDS: 1.71 Total: 48.97 kcal Atomic # 16 Polarization: 3.68 SS G_CDS: -1.32 Total: 2.36 kcal Total: -56.17 3.07 -53.10 kcal The number of atoms in the molecule is 22 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260414271.mol2 22 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 71.483 kcal (2) G-P(sol) polarization free energy of solvation -56.166 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 15.317 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.066 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -53.101 kcal (6) G-S(sol) free energy of system = (1) + (5) 18.382 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.14 seconds