Wall clock time and date at job start Mon Mar 30 2020 02:01:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30693 * 1 3 3 Si 1.86795 * 119.99900 * 2 1 4 4 H 1.48499 * 109.47415 * 179.97438 * 3 2 1 5 5 H 1.48496 * 109.47430 * 299.99764 * 3 2 1 6 6 H 1.48508 * 109.47280 * 60.00031 * 3 2 1 7 7 C 1.40283 * 119.99933 * 179.97438 * 2 1 3 8 8 H 1.07998 * 119.99981 * 180.02562 * 7 2 1 9 9 C 1.39905 * 120.00109 * 0.02562 * 7 2 1 10 10 C 1.37005 * 124.84063 * 179.97438 * 9 7 2 11 11 C 1.39719 * 115.07496 * 180.02562 * 10 9 7 12 12 N 1.35153 * 128.20957 * 179.97438 * 11 10 9 13 13 C 1.30768 * 122.21689 * 179.74682 * 12 11 10 14 14 C 1.38979 * 121.39280 * 0.55025 * 13 12 11 15 15 C 1.38109 * 119.21581 * 359.46535 * 14 13 12 16 16 C 1.39899 * 118.72073 * 0.25542 * 15 14 13 17 17 S 1.75485 * 124.83858 * 359.97438 * 9 7 2 18 18 H 0.97002 * 119.99558 * 0.02562 * 1 2 3 19 19 H 1.08008 * 122.46265 * 0.02562 * 10 9 7 20 20 H 1.07998 * 119.30772 * 180.29373 * 13 12 11 21 21 H 1.08002 * 120.39711 * 179.74683 * 14 13 12 22 22 H 1.07993 * 120.64377 * 180.23017 * 15 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3069 0.0000 0.0000 3 14 2.2409 1.6177 0.0000 4 1 3.7009 1.3465 0.0006 5 1 1.8822 2.3964 -1.2125 6 1 1.8821 2.3965 1.2126 7 6 2.0083 -1.2149 0.0005 8 1 3.0883 -1.2149 0.0010 9 6 1.3088 -2.4265 0.0005 10 6 1.8913 -3.6666 0.0005 11 6 0.9976 -4.7406 0.0000 12 7 1.2792 -6.0624 -0.0006 13 6 0.3424 -6.9748 0.0038 14 6 -1.0040 -6.6300 -0.0020 15 6 -1.3580 -5.2951 -0.0014 16 6 -0.3445 -4.3308 -0.0004 17 16 -0.4398 -2.5745 0.0005 18 1 -0.4849 0.8401 -0.0004 19 1 2.9626 -3.8039 0.0010 20 1 0.6207 -8.0183 0.0079 21 1 -1.7645 -7.3969 -0.0024 22 1 -2.3972 -5.0012 -0.0021 RHF calculation, no. of doubly occupied orbitals= 33 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260554365.mol2 22 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:01:16 Heat of formation + Delta-G solvation = 4.606576 kcal Electronic energy + Delta-G solvation = -10389.546060 eV Core-core repulsion = 8419.879919 eV Total energy + Delta-G solvation = -1969.666141 eV No. of doubly occupied orbitals = 33 Molecular weight (most abundant/longest-lived isotopes) = 205.026 amu Computer time = 0.14 seconds Orbital eigenvalues (eV) -40.47831 -36.94658 -35.04741 -32.87283 -30.97665 -27.65411 -24.59209 -23.67658 -21.43698 -19.81940 -17.83155 -17.40590 -16.82722 -16.12148 -15.50364 -14.93444 -14.65746 -13.92312 -13.46501 -13.34297 -13.29479 -13.09754 -12.28386 -12.15437 -11.98353 -11.25904 -11.24007 -10.93557 -9.99938 -9.41030 -8.97212 -8.45920 -6.70966 0.19137 0.59216 1.26539 1.31420 1.36412 1.56688 1.78614 1.79571 2.11916 2.80795 3.33376 3.81186 4.12692 4.45335 4.52620 4.83423 4.88093 5.09748 5.34682 5.42155 5.56115 5.66745 5.95739 6.08318 6.35517 6.43668 7.42832 7.87285 Molecular weight = 205.03amu Principal moments of inertia in cm(-1) A = 0.080177 B = 0.009806 C = 0.008764 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 349.143950 B = 2854.748122 C = 3194.049420 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.789 5.789 2 C 0.018 3.982 3 Si 1.018 2.982 4 H -0.254 1.254 5 H -0.255 1.255 6 H -0.255 1.255 7 C -0.398 4.398 8 H 0.106 0.894 9 C 0.035 3.965 10 C -0.393 4.393 11 C 0.164 3.836 12 N -0.552 5.552 13 C 0.118 3.882 14 C -0.242 4.242 15 C -0.026 4.026 16 C -0.344 4.344 17 S 0.147 5.853 18 H 0.317 0.683 19 H 0.099 0.901 20 H 0.178 0.822 21 H 0.164 0.836 22 H 0.141 0.859 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.068 0.836 0.009 3.180 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.414 5.414 2 C -0.202 4.202 3 Si 0.835 3.165 4 H -0.177 1.177 5 H -0.179 1.179 6 H -0.179 1.179 7 C -0.432 4.432 8 H 0.124 0.876 9 C -0.086 4.086 10 C -0.419 4.419 11 C 0.036 3.964 12 N -0.264 5.264 13 C -0.053 4.053 14 C -0.265 4.265 15 C -0.055 4.055 16 C -0.460 4.460 17 S 0.405 5.595 18 H 0.131 0.869 19 H 0.117 0.883 20 H 0.195 0.805 21 H 0.182 0.818 22 H 0.159 0.841 Dipole moment (debyes) X Y Z Total from point charges -3.530 1.783 0.007 3.954 hybrid contribution 0.740 -0.391 -0.001 0.837 sum -2.790 1.392 0.006 3.118 Atomic orbital electron populations 1.68591 1.09225 1.33155 1.30470 1.27396 0.95934 1.06043 0.90830 0.84582 0.78944 0.73200 0.79785 1.17671 1.17927 1.17935 1.19827 0.96485 0.89169 1.37681 0.87624 1.21730 0.96014 0.96204 0.94643 1.19322 0.97686 0.90079 1.34823 1.18937 0.91320 0.90810 0.95304 1.67653 1.39162 1.00792 1.18798 1.23060 0.89509 0.98967 0.93724 1.21998 0.97909 0.96040 1.10503 1.21046 0.97787 0.92246 0.94423 1.24738 0.98296 1.04075 1.18918 1.84369 1.04254 0.91686 1.79190 0.86855 0.88264 0.80476 0.81800 0.84116 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.79 -35.60 10.58 21.89 0.23 -35.37 14 2 C 0.02 0.81 5.50 85.36 0.47 1.28 14 3 Si 1.02 32.54 29.56 68.60 2.03 34.57 14 4 H -0.25 -8.03 7.11 99.48 0.71 -7.33 14 5 H -0.26 -7.70 7.11 99.48 0.71 -6.99 14 6 H -0.26 -7.70 7.11 99.48 0.71 -7.00 14 7 C -0.40 -20.02 9.27 23.17 0.21 -19.81 14 8 H 0.11 5.06 7.85 -2.91 -0.02 5.04 14 9 C 0.04 1.93 6.12 22.38 0.14 2.06 14 10 C -0.39 -22.29 10.18 22.34 0.23 -22.06 14 11 C 0.16 8.96 6.92 39.50 0.27 9.24 14 12 N -0.55 -27.62 10.42 -189.92 -1.98 -29.60 14 13 C 0.12 4.65 11.16 85.03 0.95 5.60 14 14 C -0.24 -8.66 10.12 22.42 0.23 -8.43 14 15 C -0.03 -1.05 10.19 22.64 0.23 -0.82 14 16 C -0.34 -17.30 6.49 23.18 0.15 -17.15 14 17 S 0.15 7.41 20.13 -56.49 -1.14 6.27 14 18 H 0.32 12.36 8.29 -92.71 -0.77 11.59 14 19 H 0.10 5.62 8.06 -2.91 -0.02 5.60 14 20 H 0.18 5.27 8.06 -2.91 -0.02 5.25 14 21 H 0.16 4.22 8.06 -2.91 -0.02 4.20 14 22 H 0.14 4.83 8.06 -2.91 -0.02 4.81 14 Total: -1.00 -62.31 216.34 3.26 -59.06 By element: Atomic # 1 Polarization: 13.93 SS G_CDS: 1.24 Total: 15.17 kcal Atomic # 6 Polarization: -52.98 SS G_CDS: 2.88 Total: -50.10 kcal Atomic # 7 Polarization: -63.22 SS G_CDS: -1.75 Total: -64.97 kcal Atomic # 14 Polarization: 32.54 SS G_CDS: 2.03 Total: 34.57 kcal Atomic # 16 Polarization: 7.41 SS G_CDS: -1.14 Total: 6.27 kcal Total: -62.31 3.26 -59.06 kcal The number of atoms in the molecule is 22 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260554365.mol2 22 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 63.664 kcal (2) G-P(sol) polarization free energy of solvation -62.314 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 1.350 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.257 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.057 kcal (6) G-S(sol) free energy of system = (1) + (5) 4.607 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.14 seconds