Wall clock time and date at job start Mon Mar 30 2020 02:06:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30579 * 1 3 3 Si 1.86805 * 120.00074 * 2 1 4 4 H 1.48503 * 109.46797 * 272.73966 * 3 2 1 5 5 H 1.48499 * 109.47055 * 32.73577 * 3 2 1 6 6 H 1.48497 * 109.47174 * 152.73871 * 3 2 1 7 7 C 1.40472 * 119.99952 * 179.97438 * 2 1 3 8 8 H 1.08001 * 119.99830 * 189.74457 * 7 2 1 9 9 C 1.39369 * 120.00269 * 9.74860 * 7 2 1 10 10 C 1.40074 * 125.90385 * 16.48617 * 9 7 2 11 11 C 1.38883 * 107.76625 * 179.97438 * 10 9 7 12 12 O 1.35075 * 144.52673 * 180.46348 * 11 10 9 13 13 C 1.35098 * 109.51706 * 179.97438 * 12 11 10 14 14 C 1.41221 * 125.59612 * 179.82757 * 13 12 11 15 15 O 1.21496 * 120.00267 * 359.68480 * 14 13 12 16 16 C 1.38389 * 108.80728 * 359.55398 * 13 12 11 17 17 C 1.39746 * 106.99628 * 0.27046 * 16 13 12 18 18 N 1.38056 * 145.11379 * 180.02562 * 17 16 13 19 19 H 0.97007 * 125.82167 * 359.94968 * 18 17 16 20 20 H 0.97002 * 120.00009 * 0.02562 * 1 2 3 21 21 H 1.07993 * 126.11913 * 0.02562 * 10 9 7 22 22 H 1.08006 * 120.00148 * 179.41368 * 14 13 12 23 23 H 1.08008 * 126.50131 * 180.29958 * 16 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3058 0.0000 0.0000 3 14 2.2398 1.6178 0.0000 4 1 2.4294 2.0798 -1.3985 5 1 1.4674 2.6353 0.7571 6 1 3.5651 1.4242 0.6413 7 6 2.0081 -1.2165 0.0005 8 1 3.0765 -1.2232 0.1589 9 6 1.3264 -2.4149 -0.2033 10 6 0.0364 -2.5463 -0.7331 11 6 -0.2705 -3.9003 -0.7706 12 8 -1.2136 -4.8054 -1.1107 13 6 -0.7657 -6.0496 -0.8341 14 6 -1.4801 -7.2480 -1.0527 15 8 -2.5998 -7.2106 -1.5229 16 6 0.5106 -5.9574 -0.3071 17 6 0.8366 -4.5993 -0.2615 18 7 1.8061 -3.6782 0.0816 19 1 2.6759 -3.8834 0.4589 20 1 -0.4850 0.8401 -0.0004 21 1 -0.6045 -1.7392 -1.0557 22 1 -1.0295 -8.1980 -0.8060 23 1 1.1363 -6.7793 0.0085 RHF calculation, no. of doubly occupied orbitals= 36 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260573680.mol2 23 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:06:40 Heat of formation + Delta-G solvation = -12.966491 kcal Electronic energy + Delta-G solvation = -12348.640020 eV Core-core repulsion = 9935.458983 eV Total energy + Delta-G solvation = -2413.181037 eV No. of doubly occupied orbitals = 36 Molecular weight (most abundant/longest-lived isotopes) = 205.053 amu Computer time = 0.15 seconds Orbital eigenvalues (eV) -43.19784 -40.04310 -39.03741 -35.68711 -33.14455 -31.02934 -30.36602 -27.82633 -24.09238 -22.60784 -21.59617 -20.71860 -19.23358 -18.12183 -17.36756 -16.96446 -16.86818 -16.00337 -15.45495 -14.81562 -14.48903 -14.21764 -13.97924 -13.54953 -13.37926 -12.94811 -12.44426 -12.15631 -11.90877 -11.31386 -10.83500 -10.53872 -9.25873 -8.77697 -8.67162 -6.46407 -0.10438 1.29510 1.43648 1.60442 1.73860 2.04818 2.14734 2.22346 2.37029 2.70942 3.17706 3.90186 4.12660 4.45938 4.63231 4.88944 4.99151 5.12620 5.31644 5.72440 5.80120 5.89951 6.00372 6.46473 6.59024 6.77974 6.91688 7.28738 8.18021 Molecular weight = 205.05amu Principal moments of inertia in cm(-1) A = 0.087308 B = 0.007778 C = 0.007201 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 320.625298 B = 3599.141830 C = 3887.170025 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.801 5.801 2 C 0.034 3.966 3 Si 1.010 2.990 4 H -0.262 1.262 5 H -0.269 1.269 6 H -0.245 1.245 7 C -0.460 4.460 8 H 0.110 0.890 9 C 0.289 3.711 10 C -0.330 4.330 11 C 0.025 3.975 12 O -0.203 6.203 13 C -0.236 4.236 14 C 0.416 3.584 15 O -0.547 6.547 16 C -0.044 4.044 17 C -0.128 4.128 18 N -0.590 5.590 19 H 0.420 0.580 20 H 0.297 0.703 21 H 0.126 0.874 22 H 0.188 0.812 23 H 0.201 0.799 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.452 -3.246 2.225 8.427 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.425 5.425 2 C -0.186 4.186 3 Si 0.829 3.171 4 H -0.187 1.187 5 H -0.194 1.194 6 H -0.168 1.168 7 C -0.493 4.493 8 H 0.128 0.872 9 C 0.177 3.823 10 C -0.353 4.353 11 C -0.029 4.029 12 O -0.104 6.104 13 C -0.282 4.282 14 C 0.286 3.714 15 O -0.430 6.430 16 C -0.066 4.066 17 C -0.230 4.230 18 N -0.203 5.203 19 H 0.259 0.741 20 H 0.108 0.892 21 H 0.144 0.856 22 H 0.204 0.796 23 H 0.218 0.782 Dipole moment (debyes) X Y Z Total from point charges 6.439 -3.195 1.907 7.437 hybrid contribution 0.324 0.793 0.118 0.865 sum 6.764 -2.402 2.025 7.458 Atomic orbital electron populations 1.69816 1.09772 1.31674 1.31190 1.27083 0.95593 1.05220 0.90754 0.84764 0.78914 0.73870 0.79571 1.18710 1.19364 1.16823 1.19183 0.96971 0.88793 1.44320 0.87230 1.18216 0.90091 0.84045 0.89950 1.20181 1.00911 0.89105 1.25062 1.20755 0.87986 0.93603 1.00571 1.84059 1.40245 1.15379 1.70755 1.22470 0.98872 0.85715 1.21150 1.22560 0.84887 0.90901 0.73097 1.90546 1.22791 1.90949 1.38730 1.21345 0.94252 0.93016 0.98004 1.18952 0.92926 0.92946 1.18221 1.41255 1.15963 1.03469 1.59644 0.74090 0.89220 0.85610 0.79642 0.78247 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.80 -39.36 10.73 21.92 0.24 -39.12 14 2 C 0.03 1.52 5.43 85.42 0.46 1.98 14 3 Si 1.01 32.94 29.58 68.60 2.03 34.97 14 4 H -0.26 -8.44 7.11 99.48 0.71 -7.73 14 5 H -0.27 -8.53 7.11 99.48 0.71 -7.82 14 6 H -0.25 -7.38 7.11 99.48 0.71 -6.67 14 7 C -0.46 -21.46 9.42 23.09 0.22 -21.24 14 8 H 0.11 4.48 7.87 -2.91 -0.02 4.45 14 9 C 0.29 14.57 6.74 38.87 0.26 14.83 14 10 C -0.33 -18.56 9.61 22.87 0.22 -18.34 14 11 C 0.03 1.38 8.14 22.97 0.19 1.57 14 12 O -0.20 -10.87 10.67 -7.63 -0.08 -10.95 14 13 C -0.24 -9.82 6.93 23.04 0.16 -9.66 14 14 C 0.42 14.04 11.38 68.55 0.78 14.82 14 15 O -0.55 -23.90 17.88 6.91 0.12 -23.78 14 16 C -0.04 -1.60 10.84 22.67 0.25 -1.36 14 17 C -0.13 -5.86 8.07 39.07 0.32 -5.55 14 18 N -0.59 -25.61 6.24 -179.95 -1.12 -26.73 14 19 H 0.42 14.48 8.96 -92.70 -0.83 13.65 14 20 H 0.30 13.04 8.29 -92.71 -0.77 12.27 14 21 H 0.13 7.48 6.31 -2.91 -0.02 7.46 14 22 H 0.19 3.44 8.06 -2.91 -0.02 3.42 14 23 H 0.20 4.64 8.06 -2.91 -0.02 4.62 14 Total: -1.00 -69.38 220.55 4.47 -64.91 By element: Atomic # 1 Polarization: 23.21 SS G_CDS: 0.43 Total: 23.64 kcal Atomic # 6 Polarization: -25.79 SS G_CDS: 2.85 Total: -22.94 kcal Atomic # 7 Polarization: -64.97 SS G_CDS: -0.89 Total: -65.85 kcal Atomic # 8 Polarization: -34.77 SS G_CDS: 0.04 Total: -34.73 kcal Atomic # 14 Polarization: 32.94 SS G_CDS: 2.03 Total: 34.97 kcal Total: -69.38 4.47 -64.91 kcal The number of atoms in the molecule is 23 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260573680.mol2 23 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 51.945 kcal (2) G-P(sol) polarization free energy of solvation -69.380 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -17.434 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.468 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.912 kcal (6) G-S(sol) free energy of system = (1) + (5) -12.966 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.15 seconds