Wall clock time and date at job start Mon Mar 30 2020 02:01:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31045 * 1 3 3 Si 1.86805 * 120.00461 * 2 1 4 4 H 1.48495 * 109.46926 * 274.98675 * 3 2 1 5 5 H 1.48497 * 109.46668 * 34.98122 * 3 2 1 6 6 H 1.48497 * 109.47299 * 154.98456 * 3 2 1 7 7 C 1.39759 * 119.99934 * 179.97438 * 2 1 3 8 8 H 1.07998 * 119.99850 * 191.10689 * 7 2 1 9 9 C 1.40865 * 119.99852 * 11.11515 * 7 2 1 10 10 C 1.36471 * 123.27289 * 22.27580 * 9 7 2 11 11 S 1.70006 * 111.94284 * 180.02562 * 10 9 7 12 12 C 1.75660 * 93.17899 * 0.02562 * 11 10 9 13 13 C 1.39972 * 130.46796 * 180.02562 * 12 11 10 14 14 C 1.38133 * 118.67162 * 179.97438 * 13 12 11 15 15 C 1.38601 * 119.20493 * 0.02562 * 14 13 12 16 16 N 1.31148 * 121.15129 * 359.97438 * 15 14 13 17 17 C 1.34066 * 122.14523 * 359.97438 * 16 15 14 18 18 H 0.97007 * 119.99796 * 0.02562 * 1 2 3 19 19 H 1.07995 * 124.02587 * 0.26515 * 10 9 7 20 20 H 1.07996 * 120.66463 * 359.97438 * 13 12 11 21 21 H 1.08007 * 120.39774 * 180.02562 * 14 13 12 22 22 H 1.08002 * 119.42336 * 179.97438 * 15 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3105 0.0000 0.0000 3 14 2.2446 1.6177 0.0000 4 1 2.3867 2.1072 -1.3947 5 1 1.4987 2.6199 0.8027 6 1 3.5908 1.4120 0.5920 7 6 2.0092 -1.2104 0.0005 8 1 3.0740 -1.2190 0.1807 9 6 1.3247 -2.4189 -0.2341 10 6 0.1273 -2.4869 -0.8852 11 16 -0.4391 -4.0851 -1.0082 12 6 0.9517 -4.7467 -0.1635 13 6 1.2691 -6.0692 0.1674 14 6 2.4466 -6.3184 0.8453 15 6 3.2741 -5.2570 1.1763 16 7 2.9579 -4.0250 0.8568 17 6 1.8288 -3.7261 0.1986 18 1 -0.4850 0.8401 -0.0004 19 1 -0.3961 -1.6283 -1.2791 20 1 0.6067 -6.8785 -0.1019 21 1 2.7191 -7.3284 1.1141 22 1 4.1953 -5.4478 1.7067 RHF calculation, no. of doubly occupied orbitals= 33 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260583385.mol2 22 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:01:18 Heat of formation + Delta-G solvation = 39.249866 kcal Electronic energy + Delta-G solvation = -10515.480447 eV Core-core repulsion = 8547.316552 eV Total energy + Delta-G solvation = -1968.163895 eV No. of doubly occupied orbitals = 33 Molecular weight (most abundant/longest-lived isotopes) = 205.026 amu Computer time = 0.13 seconds Orbital eigenvalues (eV) -39.20675 -35.10886 -32.35516 -31.58690 -28.54324 -26.05449 -22.90332 -22.44539 -19.88867 -17.09610 -16.60248 -15.49313 -15.31478 -14.46848 -13.98206 -13.43334 -12.89825 -12.47168 -11.71669 -11.45947 -11.18074 -10.97892 -10.71689 -10.52451 -10.23433 -9.60117 -9.46575 -9.02590 -8.47931 -7.55208 -6.88490 -6.64835 -4.28696 1.67560 1.89983 2.72934 2.99092 3.12258 3.17922 3.66410 3.75283 4.02144 4.57475 5.11970 5.33644 5.36912 5.59415 5.79549 6.09356 6.40491 6.67360 6.78605 7.20261 7.38157 7.69335 7.91935 8.42056 8.75374 8.82338 8.97883 10.29693 Molecular weight = 205.03amu Principal moments of inertia in cm(-1) A = 0.043884 B = 0.011955 C = 0.009566 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 637.885632 B = 2341.481872 C = 2926.334151 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.801 5.801 2 C 0.064 3.936 3 Si 0.916 3.084 4 H -0.270 1.270 5 H -0.278 1.278 6 H -0.262 1.262 7 C -0.414 4.414 8 H 0.082 0.918 9 C 0.083 3.917 10 C -0.347 4.347 11 S 0.054 5.946 12 C -0.200 4.200 13 C -0.054 4.054 14 C -0.187 4.187 15 C 0.086 3.914 16 N -0.453 5.453 17 C 0.139 3.861 18 H 0.277 0.723 19 H 0.169 0.831 20 H 0.123 0.877 21 H 0.126 0.874 22 H 0.147 0.853 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.395 -6.227 -0.045 6.381 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.428 5.428 2 C -0.152 4.152 3 Si 0.741 3.259 4 H -0.195 1.195 5 H -0.204 1.204 6 H -0.186 1.186 7 C -0.447 4.447 8 H 0.100 0.900 9 C 0.074 3.926 10 C -0.485 4.485 11 S 0.316 5.684 12 C -0.318 4.318 13 C -0.086 4.086 14 C -0.210 4.210 15 C -0.084 4.084 16 N -0.161 5.161 17 C 0.000 4.000 18 H 0.088 0.912 19 H 0.186 0.814 20 H 0.141 0.859 21 H 0.144 0.856 22 H 0.164 0.836 Dipole moment (debyes) X Y Z Total from point charges 0.406 -5.826 -0.492 5.860 hybrid contribution 0.984 0.693 0.511 1.308 sum 1.390 -5.132 0.018 5.317 Atomic orbital electron populations 1.69837 1.07339 1.28608 1.36999 1.25846 0.94893 1.01184 0.93238 0.86151 0.80421 0.80373 0.78923 1.19547 1.20366 1.18556 1.19079 0.95996 0.89273 1.40392 0.89969 1.17102 0.92805 0.89066 0.93627 1.24379 1.06838 0.97025 1.20266 1.81829 1.22186 1.02912 1.61485 1.23560 1.02481 0.97794 1.07938 1.20756 0.96633 0.93922 0.97273 1.21773 0.96292 1.00102 1.02831 1.22442 0.99172 0.87765 0.98973 1.67318 1.17144 1.21565 1.10095 1.20835 0.89746 0.94305 0.95100 0.91178 0.81443 0.85893 0.85557 0.83603 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.80 -21.30 10.79 55.54 0.60 -20.70 14 2 C 0.06 1.66 5.36 -17.32 -0.09 1.57 14 3 Si 0.92 19.55 29.57 -169.99 -5.03 14.52 14 4 H -0.27 -5.65 7.11 56.52 0.40 -5.25 14 5 H -0.28 -5.79 7.11 56.52 0.40 -5.39 14 6 H -0.26 -5.56 7.11 56.52 0.40 -5.16 14 7 C -0.41 -11.54 9.25 -38.02 -0.35 -11.89 14 8 H 0.08 2.27 7.87 -52.49 -0.41 1.86 14 9 C 0.08 2.31 5.69 -106.15 -0.60 1.70 14 10 C -0.35 -9.19 9.51 30.09 0.29 -8.91 14 11 S 0.05 1.19 22.96 -107.50 -2.47 -1.28 14 12 C -0.20 -4.55 6.46 -38.52 -0.25 -4.80 14 13 C -0.05 -1.00 10.19 -38.97 -0.40 -1.40 14 14 C -0.19 -3.12 10.10 -39.49 -0.40 -3.52 14 15 C 0.09 1.62 11.16 -17.71 -0.20 1.42 14 16 N -0.45 -10.76 10.39 -10.03 -0.10 -10.87 14 17 C 0.14 3.57 7.04 -83.09 -0.59 2.99 14 18 H 0.28 6.72 8.30 -40.82 -0.34 6.38 14 19 H 0.17 4.62 6.26 -52.49 -0.33 4.30 14 20 H 0.12 1.87 8.06 -52.49 -0.42 1.44 14 21 H 0.13 1.57 8.06 -52.48 -0.42 1.14 14 22 H 0.15 2.15 8.06 -52.49 -0.42 1.73 14 LS Contribution 216.40 15.07 3.26 3.26 Total: -1.00 -29.36 216.40 -7.47 -36.84 By element: Atomic # 1 Polarization: 2.20 SS G_CDS: -1.14 Total: 1.05 kcal Atomic # 6 Polarization: -20.25 SS G_CDS: -2.59 Total: -22.84 kcal Atomic # 7 Polarization: -32.06 SS G_CDS: 0.49 Total: -31.56 kcal Atomic # 14 Polarization: 19.55 SS G_CDS: -5.03 Total: 14.52 kcal Atomic # 16 Polarization: 1.19 SS G_CDS: -2.47 Total: -1.28 kcal Total LS contribution 3.26 Total: 3.26 kcal Total: -29.36 -7.47 -36.84 kcal The number of atoms in the molecule is 22 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260583385.mol2 22 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 76.088 kcal (2) G-P(sol) polarization free energy of solvation -29.364 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 46.724 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.474 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.839 kcal (6) G-S(sol) free energy of system = (1) + (5) 39.250 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.14 seconds