Wall clock time and date at job start Mon Mar 30 2020 02:01:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31045 * 1 3 3 Si 1.86805 * 120.00461 * 2 1 4 4 H 1.48495 * 109.46926 * 274.98675 * 3 2 1 5 5 H 1.48497 * 109.46668 * 34.98122 * 3 2 1 6 6 H 1.48497 * 109.47299 * 154.98456 * 3 2 1 7 7 C 1.39759 * 119.99934 * 179.97438 * 2 1 3 8 8 H 1.07998 * 119.99850 * 191.10689 * 7 2 1 9 9 C 1.40865 * 119.99852 * 11.11515 * 7 2 1 10 10 C 1.36471 * 123.27289 * 22.27580 * 9 7 2 11 11 S 1.70006 * 111.94284 * 180.02562 * 10 9 7 12 12 C 1.75660 * 93.17899 * 0.02562 * 11 10 9 13 13 C 1.39972 * 130.46796 * 180.02562 * 12 11 10 14 14 C 1.38133 * 118.67162 * 179.97438 * 13 12 11 15 15 C 1.38601 * 119.20493 * 0.02562 * 14 13 12 16 16 N 1.31148 * 121.15129 * 359.97438 * 15 14 13 17 17 C 1.34066 * 122.14523 * 359.97438 * 16 15 14 18 18 H 0.97007 * 119.99796 * 0.02562 * 1 2 3 19 19 H 1.07995 * 124.02587 * 0.26515 * 10 9 7 20 20 H 1.07996 * 120.66463 * 359.97438 * 13 12 11 21 21 H 1.08007 * 120.39774 * 180.02562 * 14 13 12 22 22 H 1.08002 * 119.42336 * 179.97438 * 15 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3105 0.0000 0.0000 3 14 2.2446 1.6177 0.0000 4 1 2.3867 2.1072 -1.3947 5 1 1.4987 2.6199 0.8027 6 1 3.5908 1.4120 0.5920 7 6 2.0092 -1.2104 0.0005 8 1 3.0740 -1.2190 0.1807 9 6 1.3247 -2.4189 -0.2341 10 6 0.1273 -2.4869 -0.8852 11 16 -0.4391 -4.0851 -1.0082 12 6 0.9517 -4.7467 -0.1635 13 6 1.2691 -6.0692 0.1674 14 6 2.4466 -6.3184 0.8453 15 6 3.2741 -5.2570 1.1763 16 7 2.9579 -4.0250 0.8568 17 6 1.8288 -3.7261 0.1986 18 1 -0.4850 0.8401 -0.0004 19 1 -0.3961 -1.6283 -1.2791 20 1 0.6067 -6.8785 -0.1019 21 1 2.7191 -7.3284 1.1141 22 1 4.1953 -5.4478 1.7067 RHF calculation, no. of doubly occupied orbitals= 33 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260583385.mol2 22 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:01:18 Heat of formation + Delta-G solvation = 20.607132 kcal Electronic energy + Delta-G solvation = -10516.288857 eV Core-core repulsion = 8547.316552 eV Total energy + Delta-G solvation = -1968.972305 eV No. of doubly occupied orbitals = 33 Molecular weight (most abundant/longest-lived isotopes) = 205.026 amu Computer time = 0.14 seconds Orbital eigenvalues (eV) -40.82765 -36.97445 -34.22046 -33.15787 -30.28013 -28.00816 -24.57057 -24.07935 -21.72672 -18.80948 -18.46579 -17.24341 -16.94768 -16.13839 -15.55964 -15.12725 -14.71917 -13.99930 -13.42328 -13.25437 -12.95185 -12.76043 -12.54262 -12.22992 -11.99434 -11.41782 -11.27235 -10.79026 -10.10264 -9.28779 -8.74678 -8.56433 -6.31213 0.03007 0.37052 1.04202 1.26563 1.35702 1.50408 1.82841 1.88326 2.22449 2.85234 3.36833 3.57398 4.03312 4.18814 4.29800 4.65082 4.87940 5.15665 5.20678 5.22577 5.59756 5.89869 5.92625 6.41922 6.76718 6.86743 7.28442 8.37385 Molecular weight = 205.03amu Principal moments of inertia in cm(-1) A = 0.043884 B = 0.011955 C = 0.009566 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 637.885632 B = 2341.481872 C = 2926.334151 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.831 5.831 2 C 0.023 3.977 3 Si 0.990 3.010 4 H -0.261 1.261 5 H -0.265 1.265 6 H -0.262 1.262 7 C -0.454 4.454 8 H 0.068 0.932 9 C 0.052 3.948 10 C -0.377 4.377 11 S 0.094 5.906 12 C -0.217 4.217 13 C -0.054 4.054 14 C -0.159 4.159 15 C 0.085 3.915 16 N -0.495 5.495 17 C 0.092 3.908 18 H 0.285 0.715 19 H 0.146 0.854 20 H 0.164 0.836 21 H 0.186 0.814 22 H 0.188 0.812 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.237 -8.301 0.587 8.617 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.458 5.458 2 C -0.190 4.190 3 Si 0.811 3.189 4 H -0.186 1.186 5 H -0.189 1.189 6 H -0.186 1.186 7 C -0.487 4.487 8 H 0.087 0.913 9 C 0.043 3.957 10 C -0.514 4.514 11 S 0.356 5.644 12 C -0.335 4.335 13 C -0.085 4.085 14 C -0.181 4.181 15 C -0.084 4.084 16 N -0.204 5.204 17 C -0.045 4.045 18 H 0.096 0.904 19 H 0.163 0.837 20 H 0.181 0.819 21 H 0.204 0.796 22 H 0.205 0.795 Dipole moment (debyes) X Y Z Total from point charges 1.233 -7.917 0.133 8.014 hybrid contribution 0.801 1.103 0.387 1.416 sum 2.033 -6.815 0.520 7.131 Atomic orbital electron populations 1.69911 1.08686 1.29939 1.37284 1.26745 0.95752 1.04369 0.92130 0.85068 0.78806 0.75679 0.79382 1.18561 1.18948 1.18597 1.19255 0.95655 0.90918 1.42901 0.91341 1.17575 0.93598 0.90696 0.93847 1.24304 1.07109 0.99194 1.20836 1.81290 1.21945 0.99555 1.61631 1.23871 1.02019 0.99302 1.08268 1.21354 0.97915 0.92874 0.96399 1.22411 0.94155 1.02156 0.99368 1.23334 1.00691 0.86791 0.97572 1.67259 1.17204 1.24592 1.11331 1.20702 0.91791 0.94127 0.97908 0.90412 0.83696 0.81858 0.79647 0.79486 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.83 -46.04 10.79 21.81 0.24 -45.81 14 2 C 0.02 1.22 5.36 85.18 0.46 1.68 14 3 Si 0.99 41.20 29.57 68.60 2.03 43.23 14 4 H -0.26 -10.38 7.11 99.48 0.71 -9.68 14 5 H -0.27 -10.36 7.11 99.48 0.71 -9.65 14 6 H -0.26 -10.78 7.11 99.48 0.71 -10.08 14 7 C -0.45 -26.70 9.25 23.28 0.22 -26.49 14 8 H 0.07 4.03 7.87 -2.91 -0.02 4.01 14 9 C 0.05 3.05 5.69 -20.86 -0.12 2.94 14 10 C -0.38 -20.95 9.51 67.41 0.64 -20.31 14 11 S 0.09 4.20 22.96 -56.49 -1.30 2.90 14 12 C -0.22 -9.67 6.46 22.96 0.15 -9.52 14 13 C -0.05 -1.78 10.19 22.67 0.23 -1.55 14 14 C -0.16 -4.43 10.10 22.33 0.23 -4.20 14 15 C 0.09 2.91 11.16 84.88 0.95 3.86 14 16 N -0.49 -23.38 10.39 -185.64 -1.93 -25.31 14 17 C 0.09 4.81 7.04 41.26 0.29 5.10 14 18 H 0.29 14.26 8.30 -92.70 -0.77 13.49 14 19 H 0.15 8.53 6.26 -2.91 -0.02 8.51 14 20 H 0.16 4.04 8.06 -2.91 -0.02 4.01 14 21 H 0.19 3.06 8.06 -2.91 -0.02 3.04 14 22 H 0.19 4.63 8.06 -2.91 -0.02 4.60 14 Total: -1.00 -68.54 216.40 3.31 -65.23 By element: Atomic # 1 Polarization: 7.02 SS G_CDS: 1.24 Total: 8.26 kcal Atomic # 6 Polarization: -51.54 SS G_CDS: 3.04 Total: -48.50 kcal Atomic # 7 Polarization: -69.42 SS G_CDS: -1.69 Total: -71.11 kcal Atomic # 14 Polarization: 41.20 SS G_CDS: 2.03 Total: 43.23 kcal Atomic # 16 Polarization: 4.20 SS G_CDS: -1.30 Total: 2.90 kcal Total: -68.54 3.31 -65.23 kcal The number of atoms in the molecule is 22 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260583385.mol2 22 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 85.837 kcal (2) G-P(sol) polarization free energy of solvation -68.544 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 17.293 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.314 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.230 kcal (6) G-S(sol) free energy of system = (1) + (5) 20.607 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.14 seconds