Wall clock time and date at job start Mon Mar 30 2020 02:01:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.29664 * 1 3 3 Si 1.86797 * 119.99760 * 2 1 4 4 H 1.48500 * 109.47212 * 179.97438 * 3 2 1 5 5 H 1.48500 * 109.47405 * 300.00102 * 3 2 1 6 6 H 1.48503 * 109.47368 * 59.99904 * 3 2 1 7 7 C 1.46274 * 120.00095 * 180.02562 * 2 1 3 8 8 H 1.08005 * 119.99773 * 192.68072 * 7 2 1 9 9 C 1.40447 * 120.00293 * 12.67392 * 7 2 1 10 10 C 1.41688 * 120.16329 * 205.16040 * 9 7 2 11 11 C 1.37729 * 120.15492 * 180.02562 * 10 9 7 12 12 C 1.38267 * 120.50538 * 0.04387 * 11 10 9 13 13 C 1.41208 * 120.31797 * 359.95366 * 12 11 10 14 14 N 1.34261 * 120.08334 * 179.97438 * 13 12 11 15 15 C 1.25000 * 120.00287 * 0.03069 * 14 13 12 16 16 S 7.83457 * 57.19721 * 202.53163 * 2 1 3 17 17 C 1.39634 * 119.83568 * 0.02599 * 13 12 11 18 18 H 0.97002 * 120.00134 * 0.02562 * 1 2 3 19 19 H 1.07999 * 119.92152 * 0.02562 * 10 9 7 20 20 H 1.08009 * 119.75065 * 180.02562 * 11 10 9 21 21 H 1.07993 * 119.84531 * 179.97438 * 12 11 10 22 22 H 1.08000 * 120.24573 * 179.72115 * 17 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.2966 0.0000 0.0000 3 14 2.2306 1.6177 0.0000 4 1 3.6906 1.3465 0.0006 5 1 1.8718 2.3965 -1.2125 6 1 1.8718 2.3965 1.2125 7 6 2.0280 -1.2668 -0.0006 8 1 3.0883 -1.2782 0.2048 9 6 1.3515 -2.4682 -0.2680 10 6 1.8583 -3.6957 0.2260 11 6 1.1950 -4.8738 -0.0368 12 6 0.0315 -4.8727 -0.7838 13 6 -0.4919 -3.6612 -1.2862 14 7 -1.6217 -3.6657 -2.0114 15 6 -2.2121 -4.7430 -2.2423 16 16 -2.9477 -6.0826 -2.5234 17 6 0.1692 -2.4587 -1.0277 18 1 -0.4850 0.8400 -0.0004 19 1 2.7667 -3.7075 0.8099 20 1 1.5869 -5.8058 0.3434 21 1 -0.4797 -5.8027 -0.9837 22 1 -0.2228 -1.5289 -1.4125 RHF calculation, no. of doubly occupied orbitals= 33 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260625104.mol2 22 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:01:57 Heat of formation + Delta-G solvation = 51.421710 kcal Electronic energy + Delta-G solvation = -10251.862872 eV Core-core repulsion = 8284.226787 eV Total energy + Delta-G solvation = -1967.636084 eV No. of doubly occupied orbitals = 33 Molecular weight (most abundant/longest-lived isotopes) = 205.026 amu Computer time = 0.15 seconds Orbital eigenvalues (eV) -38.70516 -35.89246 -33.60774 -29.96235 -29.17741 -25.23047 -24.61565 -21.16404 -20.75966 -18.22403 -16.23499 -15.31690 -14.93827 -14.34801 -14.02873 -13.19093 -12.90162 -12.41705 -11.92144 -11.80723 -11.32205 -11.25359 -10.86378 -10.63846 -10.11814 -9.98140 -9.54038 -8.80150 -8.72468 -7.77075 -7.13961 -6.80518 -4.57741 0.62727 1.24824 1.95902 2.60965 2.90948 2.96057 2.99412 3.28921 3.69137 4.32665 5.25515 5.39605 5.94668 6.12259 6.53409 6.63505 6.71607 6.97729 7.20552 7.46334 7.56954 7.77309 7.81522 8.05252 8.43505 8.52507 8.69495 9.79130 Molecular weight = 205.03amu Principal moments of inertia in cm(-1) A = 0.053813 B = 0.008276 C = 0.007287 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 520.197182 B = 3382.533130 C = 3841.329780 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.761 5.761 2 C 0.070 3.930 3 Si 0.922 3.078 4 H -0.255 1.255 5 H -0.269 1.269 6 H -0.270 1.270 7 C -0.457 4.457 8 H 0.088 0.912 9 C 0.108 3.892 10 C -0.225 4.225 11 C -0.070 4.070 12 C -0.281 4.281 13 C 0.107 3.893 14 N -0.420 5.420 15 C 0.229 3.771 16 S -0.105 6.105 17 C -0.126 4.126 18 H 0.290 0.710 19 H 0.099 0.901 20 H 0.097 0.903 21 H 0.095 0.905 22 H 0.134 0.866 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.438 -2.442 -1.317 2.809 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.383 5.383 2 C -0.155 4.155 3 Si 0.745 3.255 4 H -0.178 1.178 5 H -0.194 1.194 6 H -0.195 1.195 7 C -0.484 4.484 8 H 0.106 0.894 9 C 0.105 3.895 10 C -0.246 4.246 11 C -0.089 4.089 12 C -0.304 4.304 13 C 0.006 3.994 14 N -0.126 5.126 15 C -0.086 4.086 16 S 0.028 5.972 17 C -0.149 4.149 18 H 0.103 0.897 19 H 0.117 0.883 20 H 0.116 0.884 21 H 0.113 0.887 22 H 0.151 0.849 Dipole moment (debyes) X Y Z Total from point charges -1.186 -2.195 -1.649 2.990 hybrid contribution 0.816 1.473 0.369 1.724 sum -0.370 -0.722 -1.280 1.515 Atomic orbital electron populations 1.69176 1.08729 1.30617 1.29763 1.27516 0.94606 1.02219 0.91207 0.86030 0.81145 0.79403 0.78908 1.17786 1.19359 1.19542 1.20742 0.96295 0.89216 1.42196 0.89389 1.17449 0.90868 0.92605 0.88553 1.21260 1.03124 0.92726 1.07455 1.20323 0.94520 0.96867 0.97230 1.21134 1.02467 0.94471 1.12333 1.17624 0.87688 0.95761 0.98348 1.61631 1.12460 1.17056 1.21489 1.30573 0.94172 0.88388 0.95460 1.88979 1.45547 0.95052 1.67644 1.21544 0.97642 0.94841 1.00855 0.89727 0.88253 0.88448 0.88704 0.84884 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.76 -18.66 10.85 55.97 0.61 -18.05 14 2 C 0.07 1.64 5.39 -15.24 -0.08 1.56 14 3 Si 0.92 17.34 29.66 -169.99 -5.04 12.30 14 4 H -0.25 -4.72 7.11 56.52 0.40 -4.32 14 5 H -0.27 -4.99 7.11 56.52 0.40 -4.58 14 6 H -0.27 -4.98 7.11 56.52 0.40 -4.58 14 7 C -0.46 -11.45 9.31 -35.52 -0.33 -11.79 14 8 H 0.09 2.09 7.96 -52.48 -0.42 1.67 14 9 C 0.11 2.80 5.61 -106.88 -0.60 2.20 14 10 C -0.23 -5.32 9.82 -38.45 -0.38 -5.69 14 11 C -0.07 -1.56 10.00 -39.76 -0.40 -1.96 14 12 C -0.28 -6.45 9.29 -38.44 -0.36 -6.80 14 13 C 0.11 2.65 6.51 -85.16 -0.55 2.09 14 14 N -0.42 -9.71 10.16 15.96 0.16 -9.55 14 15 C 0.23 4.56 13.04 49.98 0.65 5.21 14 16 S -0.11 -1.71 30.35 -107.50 -3.26 -4.97 14 17 C -0.13 -3.30 8.70 -38.19 -0.33 -3.64 14 18 H 0.29 6.36 8.27 -40.82 -0.34 6.02 14 19 H 0.10 2.15 8.06 -52.49 -0.42 1.72 14 20 H 0.10 1.83 8.06 -52.48 -0.42 1.41 14 21 H 0.09 2.00 6.96 -52.49 -0.37 1.63 14 22 H 0.13 3.62 6.04 -52.49 -0.32 3.30 14 LS Contribution 225.36 15.07 3.40 3.40 Total: -1.00 -25.82 225.36 -7.60 -33.42 By element: Atomic # 1 Polarization: 3.36 SS G_CDS: -1.08 Total: 2.28 kcal Atomic # 6 Polarization: -16.44 SS G_CDS: -2.38 Total: -18.82 kcal Atomic # 7 Polarization: -28.37 SS G_CDS: 0.77 Total: -27.60 kcal Atomic # 14 Polarization: 17.34 SS G_CDS: -5.04 Total: 12.30 kcal Atomic # 16 Polarization: -1.71 SS G_CDS: -3.26 Total: -4.97 kcal Total LS contribution 3.40 Total: 3.40 kcal Total: -25.82 -7.60 -33.42 kcal The number of atoms in the molecule is 22 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260625104.mol2 22 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 84.841 kcal (2) G-P(sol) polarization free energy of solvation -25.822 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 59.020 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.598 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.420 kcal (6) G-S(sol) free energy of system = (1) + (5) 51.422 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.15 seconds