Wall clock time and date at job start Mon Mar 30 2020 02:01:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.29664 * 1 3 3 Si 1.86797 * 119.99760 * 2 1 4 4 H 1.48500 * 109.47212 * 179.97438 * 3 2 1 5 5 H 1.48500 * 109.47405 * 300.00102 * 3 2 1 6 6 H 1.48503 * 109.47368 * 59.99904 * 3 2 1 7 7 C 1.46274 * 120.00095 * 180.02562 * 2 1 3 8 8 H 1.08005 * 119.99773 * 192.68072 * 7 2 1 9 9 C 1.40447 * 120.00293 * 12.67392 * 7 2 1 10 10 C 1.41688 * 120.16329 * 205.16040 * 9 7 2 11 11 C 1.37729 * 120.15492 * 180.02562 * 10 9 7 12 12 C 1.38267 * 120.50538 * 0.04387 * 11 10 9 13 13 C 1.41208 * 120.31797 * 359.95366 * 12 11 10 14 14 N 1.34261 * 120.08334 * 179.97438 * 13 12 11 15 15 C 1.25000 * 120.00287 * 0.03069 * 14 13 12 16 16 S 7.83457 * 57.19721 * 202.53163 * 2 1 3 17 17 C 1.39634 * 119.83568 * 0.02599 * 13 12 11 18 18 H 0.97002 * 120.00134 * 0.02562 * 1 2 3 19 19 H 1.07999 * 119.92152 * 0.02562 * 10 9 7 20 20 H 1.08009 * 119.75065 * 180.02562 * 11 10 9 21 21 H 1.07993 * 119.84531 * 179.97438 * 12 11 10 22 22 H 1.08000 * 120.24573 * 179.72115 * 17 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.2966 0.0000 0.0000 3 14 2.2306 1.6177 0.0000 4 1 3.6906 1.3465 0.0006 5 1 1.8718 2.3965 -1.2125 6 1 1.8718 2.3965 1.2125 7 6 2.0280 -1.2668 -0.0006 8 1 3.0883 -1.2782 0.2048 9 6 1.3515 -2.4682 -0.2680 10 6 1.8583 -3.6957 0.2260 11 6 1.1950 -4.8738 -0.0368 12 6 0.0315 -4.8727 -0.7838 13 6 -0.4919 -3.6612 -1.2862 14 7 -1.6217 -3.6657 -2.0114 15 6 -2.2121 -4.7430 -2.2423 16 16 -2.9477 -6.0826 -2.5234 17 6 0.1692 -2.4587 -1.0277 18 1 -0.4850 0.8400 -0.0004 19 1 2.7667 -3.7075 0.8099 20 1 1.5869 -5.8058 0.3434 21 1 -0.4797 -5.8027 -0.9837 22 1 -0.2228 -1.5289 -1.4125 RHF calculation, no. of doubly occupied orbitals= 33 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260625104.mol2 22 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:01:57 Heat of formation + Delta-G solvation = 37.900874 kcal Electronic energy + Delta-G solvation = -10252.449179 eV Core-core repulsion = 8284.226787 eV Total energy + Delta-G solvation = -1968.222392 eV No. of doubly occupied orbitals = 33 Molecular weight (most abundant/longest-lived isotopes) = 205.026 amu Computer time = 0.14 seconds Orbital eigenvalues (eV) -40.40089 -37.59689 -35.37514 -31.75933 -30.90604 -27.03482 -26.28712 -22.95729 -22.47390 -19.96104 -18.01950 -17.01531 -16.64189 -16.06790 -15.68008 -14.87610 -14.53937 -14.02808 -13.53857 -13.43198 -13.01296 -12.85739 -12.57170 -12.22661 -11.89968 -11.67960 -11.24625 -10.40806 -10.22572 -9.60241 -8.86619 -8.43152 -6.45211 -0.89972 -0.38084 0.53198 0.90457 1.35641 1.38083 1.52364 1.61759 2.12667 2.57184 3.55599 3.66763 4.26882 4.36226 4.77771 4.87471 4.97478 5.15204 5.40553 5.67544 5.79782 5.95646 6.04260 6.28586 6.67341 6.73920 6.87755 8.08072 Molecular weight = 205.03amu Principal moments of inertia in cm(-1) A = 0.053813 B = 0.008276 C = 0.007287 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 520.197182 B = 3382.533130 C = 3841.329780 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.796 5.796 2 C 0.029 3.971 3 Si 0.999 3.001 4 H -0.249 1.249 5 H -0.264 1.264 6 H -0.260 1.260 7 C -0.492 4.492 8 H 0.092 0.908 9 C 0.085 3.915 10 C -0.242 4.242 11 C -0.066 4.066 12 C -0.291 4.291 13 C 0.110 3.890 14 N -0.474 5.474 15 C 0.205 3.795 16 S 0.016 5.984 17 C -0.172 4.172 18 H 0.298 0.702 19 H 0.113 0.887 20 H 0.136 0.864 21 H 0.115 0.885 22 H 0.109 0.891 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.837 -3.947 -1.514 4.309 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.418 5.418 2 C -0.193 4.193 3 Si 0.817 3.183 4 H -0.172 1.172 5 H -0.189 1.189 6 H -0.185 1.185 7 C -0.519 4.519 8 H 0.110 0.890 9 C 0.082 3.918 10 C -0.262 4.262 11 C -0.084 4.084 12 C -0.314 4.314 13 C 0.008 3.992 14 N -0.186 5.186 15 C -0.102 4.102 16 S 0.146 5.854 17 C -0.195 4.195 18 H 0.110 0.890 19 H 0.131 0.869 20 H 0.154 0.846 21 H 0.133 0.867 22 H 0.127 0.873 Dipole moment (debyes) X Y Z Total from point charges -1.609 -3.741 -1.854 4.475 hybrid contribution 0.670 1.551 0.322 1.720 sum -0.939 -2.190 -1.532 2.833 Atomic orbital electron populations 1.69247 1.10371 1.31974 1.30177 1.28472 0.95317 1.05434 0.90056 0.84917 0.79707 0.74464 0.79188 1.17196 1.18853 1.18486 1.21055 0.96710 0.90359 1.43815 0.89020 1.17826 0.91230 0.93953 0.88798 1.21502 1.03946 0.92720 1.08043 1.20719 0.93817 0.97830 0.96069 1.21406 1.02968 0.94650 1.12420 1.17792 0.88070 0.95743 0.97557 1.61724 1.13435 1.19253 1.24153 1.31080 0.94846 0.89756 0.94506 1.88634 1.41364 0.91755 1.63619 1.21366 0.99467 0.94864 1.03806 0.88954 0.86860 0.84648 0.86709 0.87325 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.80 -40.82 10.85 23.16 0.25 -40.57 14 2 C 0.03 1.40 5.39 87.10 0.47 1.87 14 3 Si 1.00 36.06 29.66 68.60 2.03 38.09 14 4 H -0.25 -8.66 7.11 99.48 0.71 -7.95 14 5 H -0.26 -9.23 7.11 99.48 0.71 -8.53 14 6 H -0.26 -8.91 7.11 99.48 0.71 -8.20 14 7 C -0.49 -25.70 9.31 24.90 0.23 -25.47 14 8 H 0.09 4.50 7.96 -2.91 -0.02 4.48 14 9 C 0.09 4.59 5.61 -21.33 -0.12 4.47 14 10 C -0.24 -11.55 9.82 23.00 0.23 -11.33 14 11 C -0.07 -2.84 10.00 22.16 0.22 -2.62 14 12 C -0.29 -13.15 9.29 23.01 0.21 -12.94 14 13 C 0.11 5.59 6.51 39.84 0.26 5.85 14 14 N -0.47 -22.28 10.16 -91.25 -0.93 -23.21 14 15 C 0.20 7.80 13.04 131.22 1.71 9.51 14 16 S 0.02 0.44 30.35 -56.49 -1.71 -1.28 14 17 C -0.17 -9.52 8.70 23.17 0.20 -9.32 14 18 H 0.30 13.61 8.27 -92.71 -0.77 12.84 14 19 H 0.11 4.91 8.06 -2.91 -0.02 4.89 14 20 H 0.14 4.69 8.06 -2.91 -0.02 4.67 14 21 H 0.12 4.55 6.96 -2.91 -0.02 4.53 14 22 H 0.11 6.38 6.04 -2.91 -0.02 6.37 14 Total: -1.00 -58.14 225.36 4.31 -53.83 By element: Atomic # 1 Polarization: 11.85 SS G_CDS: 1.25 Total: 13.10 kcal Atomic # 6 Polarization: -43.39 SS G_CDS: 3.41 Total: -39.97 kcal Atomic # 7 Polarization: -63.10 SS G_CDS: -0.68 Total: -63.77 kcal Atomic # 14 Polarization: 36.06 SS G_CDS: 2.03 Total: 38.09 kcal Atomic # 16 Polarization: 0.44 SS G_CDS: -1.71 Total: -1.28 kcal Total: -58.14 4.31 -53.83 kcal The number of atoms in the molecule is 22 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260625104.mol2 22 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 91.736 kcal (2) G-P(sol) polarization free energy of solvation -58.140 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 33.596 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.305 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -53.835 kcal (6) G-S(sol) free energy of system = (1) + (5) 37.901 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.14 seconds