Wall clock time and date at job start Mon Mar 30 2020 02:07:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31508 * 1 3 3 Si 1.86801 * 120.00222 * 2 1 4 4 H 1.48501 * 109.47238 * 270.00523 * 3 2 1 5 5 H 1.48503 * 109.46845 * 30.00259 * 3 2 1 6 6 H 1.48503 * 109.47354 * 149.99878 * 3 2 1 7 7 C 1.37883 * 120.00195 * 180.02562 * 2 1 3 8 8 H 1.07997 * 120.00247 * 179.97438 * 7 2 1 9 9 C 1.50696 * 119.99715 * 359.97438 * 7 2 1 10 10 C 1.50705 * 109.47375 * 179.97438 * 9 7 2 11 11 N 1.32043 * 118.79878 * 269.97988 * 10 9 7 12 12 C 1.32267 * 121.22779 * 179.97438 * 11 10 9 13 13 C 1.39454 * 118.56346 * 0.02562 * 12 11 10 14 14 N 1.35787 * 135.01147 * 180.33175 * 13 12 11 15 15 C 1.29952 * 108.70155 * 180.12918 * 14 13 12 16 16 O 1.34357 * 110.31028 * 359.56480 * 15 14 13 17 17 C 1.34643 * 108.26806 * 0.27249 * 16 15 14 18 18 N 1.31709 * 118.79717 * 89.99392 * 10 9 7 19 19 H 0.96995 * 120.00203 * 359.97438 * 1 2 3 20 20 H 1.08999 * 109.47675 * 60.00075 * 9 7 2 21 21 H 1.09000 * 109.47378 * 299.99893 * 9 7 2 22 22 H 1.07995 * 120.72147 * 179.97438 * 12 11 10 23 23 H 1.08002 * 124.84644 * 179.83950 * 15 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4966 2.0465 -1.4001 5 1 1.4466 2.6526 0.7001 6 1 3.5467 1.4402 0.7001 7 6 2.0045 -1.1941 -0.0005 8 1 3.0845 -1.1941 -0.0010 9 6 1.2510 -2.4991 -0.0005 10 6 2.2303 -3.6447 -0.0018 11 7 2.6424 -4.1279 -1.1595 12 6 3.5014 -5.1321 -1.2166 13 6 3.9693 -5.6782 -0.0218 14 7 4.8302 -6.6757 0.3060 15 6 4.8956 -6.7608 1.6011 16 8 4.1044 -5.8357 2.1698 17 6 3.5040 -5.1340 1.1901 18 7 2.6435 -4.1274 1.1519 19 1 -0.4850 0.8400 0.0004 20 1 0.6240 -2.5568 -0.8903 21 1 0.6247 -2.5571 0.8897 22 1 3.8327 -5.5212 -2.1680 23 1 5.5030 -7.4707 2.1430 RHF calculation, no. of doubly occupied orbitals= 36 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260731955.mol2 23 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:07:40 Heat of formation + Delta-G solvation = 67.388139 kcal Electronic energy + Delta-G solvation = -12343.615764 eV Core-core repulsion = 9966.211916 eV Total energy + Delta-G solvation = -2377.403848 eV No. of doubly occupied orbitals = 36 Molecular weight (most abundant/longest-lived isotopes) = 205.059 amu Computer time = 0.14 seconds Orbital eigenvalues (eV) -43.35323 -39.74265 -35.03452 -33.38391 -33.08389 -31.02719 -28.00818 -25.00987 -24.19772 -22.13624 -21.89445 -18.64126 -18.19374 -17.01106 -16.44072 -15.94648 -15.12447 -14.59332 -13.77056 -13.56394 -12.77364 -12.27034 -11.88022 -11.56068 -11.48030 -10.89519 -10.73676 -10.56100 -10.08646 -9.93842 -9.60895 -8.84378 -8.51315 -8.50744 -6.13903 -4.17574 0.68897 1.30426 2.16881 2.46845 3.28924 3.34465 3.38833 3.84665 4.06193 4.25622 4.39938 4.49535 4.60038 5.22670 5.29359 5.54091 5.88491 6.03731 6.59746 7.19703 7.31448 7.33499 7.46716 7.78895 8.08868 8.54568 8.81410 9.44920 10.96880 Molecular weight = 205.06amu Principal moments of inertia in cm(-1) A = 0.058618 B = 0.008001 C = 0.007801 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 477.551695 B = 3498.781355 C = 3588.241549 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.890 5.890 2 C 0.064 3.936 3 Si 0.903 3.097 4 H -0.278 1.278 5 H -0.284 1.284 6 H -0.274 1.274 7 C -0.511 4.511 8 H 0.056 0.944 9 C 0.080 3.920 10 C 0.397 3.603 11 N -0.504 5.504 12 C 0.226 3.774 13 C -0.122 4.122 14 N -0.459 5.459 15 C 0.218 3.782 16 O -0.207 6.207 17 C 0.262 3.738 18 N -0.496 5.496 19 H 0.266 0.734 20 H 0.059 0.941 21 H 0.055 0.945 22 H 0.176 0.824 23 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.504 -11.118 1.270 13.474 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.528 5.528 2 C -0.139 4.139 3 Si 0.731 3.269 4 H -0.204 1.204 5 H -0.209 1.209 6 H -0.199 1.199 7 C -0.550 4.550 8 H 0.074 0.926 9 C 0.042 3.958 10 C 0.135 3.865 11 N -0.219 5.219 12 C 0.051 3.949 13 C -0.238 4.238 14 N -0.187 5.187 15 C -0.015 4.015 16 O -0.094 6.094 17 C 0.074 3.926 18 N -0.220 5.220 19 H 0.075 0.925 20 H 0.077 0.923 21 H 0.073 0.927 22 H 0.193 0.807 23 H 0.277 0.723 Dipole moment (debyes) X Y Z Total from point charges 7.017 -10.619 0.947 12.763 hybrid contribution 0.934 0.408 0.660 1.214 sum 7.951 -10.211 1.607 13.041 Atomic orbital electron populations 1.69927 1.05969 1.27268 1.49612 1.24920 0.94975 0.99256 0.94738 0.86407 0.79692 0.82569 0.78275 1.20362 1.20918 1.19872 1.20745 0.92866 0.89006 1.52380 0.92608 1.18417 0.90934 0.86075 1.00419 1.24721 0.90655 0.91546 0.79593 1.68657 1.12479 1.10456 1.30297 1.22795 0.88030 0.88141 0.95960 1.21342 1.03873 1.00639 0.97972 1.70427 1.17566 1.17781 1.12938 1.28373 0.93030 0.91656 0.88463 1.84415 1.49485 1.40371 1.35128 1.20660 0.93972 0.92824 0.85099 1.67411 1.12506 1.09338 1.32754 0.92479 0.92292 0.92712 0.80658 0.72295 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -25.70 13.29 55.43 0.74 -24.96 14 2 C 0.06 1.78 5.46 -17.82 -0.10 1.68 14 3 Si 0.90 21.47 29.54 -169.99 -5.02 16.45 14 4 H -0.28 -6.48 7.11 56.52 0.40 -6.08 14 5 H -0.28 -6.61 7.11 56.52 0.40 -6.21 14 6 H -0.27 -6.48 7.11 56.52 0.40 -6.08 14 7 C -0.51 -14.36 9.09 -34.44 -0.31 -14.68 14 8 H 0.06 1.58 7.74 -52.49 -0.41 1.18 14 9 C 0.08 2.08 5.39 -29.03 -0.16 1.93 14 10 C 0.40 9.25 6.82 -157.05 -1.07 8.18 14 11 N -0.50 -10.59 10.31 -10.49 -0.11 -10.70 14 12 C 0.23 3.90 11.38 -16.91 -0.19 3.71 14 13 C -0.12 -2.15 7.30 -84.71 -0.62 -2.77 14 14 N -0.46 -6.76 11.33 -12.48 -0.14 -6.90 14 15 C 0.22 2.51 13.13 51.97 0.68 3.19 14 16 O -0.21 -3.29 10.75 4.63 0.05 -3.24 14 17 C 0.26 5.13 8.66 -16.32 -0.14 4.99 14 18 N -0.50 -11.29 10.35 -10.66 -0.11 -11.40 14 19 H 0.27 7.21 8.31 -40.82 -0.34 6.87 14 20 H 0.06 1.56 8.14 -51.93 -0.42 1.14 14 21 H 0.05 1.48 8.14 -51.93 -0.42 1.06 14 22 H 0.18 2.27 8.06 -52.49 -0.42 1.85 14 23 H 0.26 1.19 8.06 -52.49 -0.42 0.77 14 LS Contribution 222.57 15.07 3.35 3.35 Total: -1.00 -32.29 222.57 -4.38 -36.67 By element: Atomic # 1 Polarization: -4.28 SS G_CDS: -1.23 Total: -5.51 kcal Atomic # 6 Polarization: 8.14 SS G_CDS: -1.91 Total: 6.24 kcal Atomic # 7 Polarization: -54.34 SS G_CDS: 0.38 Total: -53.96 kcal Atomic # 8 Polarization: -3.29 SS G_CDS: 0.05 Total: -3.24 kcal Atomic # 14 Polarization: 21.47 SS G_CDS: -5.02 Total: 16.45 kcal Total LS contribution 3.35 Total: 3.35 kcal Total: -32.29 -4.38 -36.67 kcal The number of atoms in the molecule is 23 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260731955.mol2 23 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 104.061 kcal (2) G-P(sol) polarization free energy of solvation -32.291 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 71.770 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.382 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.673 kcal (6) G-S(sol) free energy of system = (1) + (5) 67.388 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.14 seconds