Wall clock time and date at job start Mon Mar 30 2020 02:07:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31508 * 1 3 3 Si 1.86801 * 120.00222 * 2 1 4 4 H 1.48501 * 109.47238 * 270.00523 * 3 2 1 5 5 H 1.48503 * 109.46845 * 30.00259 * 3 2 1 6 6 H 1.48503 * 109.47354 * 149.99878 * 3 2 1 7 7 C 1.37883 * 120.00195 * 180.02562 * 2 1 3 8 8 H 1.07997 * 120.00247 * 179.97438 * 7 2 1 9 9 C 1.50696 * 119.99715 * 359.97438 * 7 2 1 10 10 C 1.50705 * 109.47375 * 179.97438 * 9 7 2 11 11 N 1.32043 * 118.79878 * 269.97988 * 10 9 7 12 12 C 1.32267 * 121.22779 * 179.97438 * 11 10 9 13 13 C 1.39454 * 118.56346 * 0.02562 * 12 11 10 14 14 N 1.35787 * 135.01147 * 180.33175 * 13 12 11 15 15 C 1.29952 * 108.70155 * 180.12918 * 14 13 12 16 16 O 1.34357 * 110.31028 * 359.56480 * 15 14 13 17 17 C 1.34643 * 108.26806 * 0.27249 * 16 15 14 18 18 N 1.31709 * 118.79717 * 89.99392 * 10 9 7 19 19 H 0.96995 * 120.00203 * 359.97438 * 1 2 3 20 20 H 1.08999 * 109.47675 * 60.00075 * 9 7 2 21 21 H 1.09000 * 109.47378 * 299.99893 * 9 7 2 22 22 H 1.07995 * 120.72147 * 179.97438 * 12 11 10 23 23 H 1.08002 * 124.84644 * 179.83950 * 15 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4966 2.0465 -1.4001 5 1 1.4466 2.6526 0.7001 6 1 3.5467 1.4402 0.7001 7 6 2.0045 -1.1941 -0.0005 8 1 3.0845 -1.1941 -0.0010 9 6 1.2510 -2.4991 -0.0005 10 6 2.2303 -3.6447 -0.0018 11 7 2.6424 -4.1279 -1.1595 12 6 3.5014 -5.1321 -1.2166 13 6 3.9693 -5.6782 -0.0218 14 7 4.8302 -6.6757 0.3060 15 6 4.8956 -6.7608 1.6011 16 8 4.1044 -5.8357 2.1698 17 6 3.5040 -5.1340 1.1901 18 7 2.6435 -4.1274 1.1519 19 1 -0.4850 0.8400 0.0004 20 1 0.6240 -2.5568 -0.8903 21 1 0.6247 -2.5571 0.8897 22 1 3.8327 -5.5212 -2.1680 23 1 5.5030 -7.4707 2.1430 RHF calculation, no. of doubly occupied orbitals= 36 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260731955.mol2 23 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:07:40 Heat of formation + Delta-G solvation = 40.148540 kcal Electronic energy + Delta-G solvation = -12344.796962 eV Core-core repulsion = 9966.211916 eV Total energy + Delta-G solvation = -2378.585046 eV No. of doubly occupied orbitals = 36 Molecular weight (most abundant/longest-lived isotopes) = 205.059 amu Computer time = 0.16 seconds Orbital eigenvalues (eV) -44.64540 -41.25059 -36.36118 -35.37991 -34.61006 -32.74623 -29.74095 -26.47474 -25.96858 -23.60160 -23.38560 -20.11823 -19.51667 -18.72635 -18.17357 -17.40719 -16.56159 -16.14387 -15.39393 -14.98120 -14.52749 -14.11225 -13.56679 -13.32876 -13.05925 -12.65343 -12.60877 -12.13638 -11.77982 -11.65677 -11.55075 -10.64781 -10.38833 -9.96396 -8.26723 -6.38991 -0.65641 -0.17875 0.88404 1.27484 1.40864 1.42351 1.53189 2.35198 2.57406 2.69217 2.89346 3.04349 3.10365 3.32898 4.01881 4.13860 4.55463 4.86680 5.06753 5.22439 5.26754 5.61946 5.73744 5.98651 6.22456 6.65305 6.96260 7.27688 8.84663 Molecular weight = 205.06amu Principal moments of inertia in cm(-1) A = 0.058618 B = 0.008001 C = 0.007801 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 477.551695 B = 3498.781355 C = 3588.241549 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.921 5.921 2 C 0.014 3.986 3 Si 0.971 3.029 4 H -0.267 1.267 5 H -0.274 1.274 6 H -0.272 1.272 7 C -0.530 4.530 8 H 0.046 0.954 9 C 0.090 3.910 10 C 0.374 3.626 11 N -0.521 5.521 12 C 0.226 3.774 13 C -0.106 4.106 14 N -0.480 5.480 15 C 0.262 3.738 16 O -0.212 6.212 17 C 0.232 3.768 18 N -0.526 5.526 19 H 0.271 0.729 20 H 0.041 0.959 21 H 0.030 0.970 22 H 0.221 0.779 23 H 0.331 0.669 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.791 -12.391 1.477 15.861 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.560 5.560 2 C -0.186 4.186 3 Si 0.795 3.205 4 H -0.192 1.192 5 H -0.198 1.198 6 H -0.197 1.197 7 C -0.569 4.569 8 H 0.065 0.935 9 C 0.051 3.949 10 C 0.110 3.890 11 N -0.237 5.237 12 C 0.052 3.948 13 C -0.221 4.221 14 N -0.208 5.208 15 C 0.031 3.969 16 O -0.099 6.099 17 C 0.044 3.956 18 N -0.250 5.250 19 H 0.080 0.920 20 H 0.059 0.941 21 H 0.048 0.952 22 H 0.237 0.763 23 H 0.345 0.655 Dipole moment (debyes) X Y Z Total from point charges 9.321 -11.925 1.147 15.179 hybrid contribution 0.361 0.554 0.699 0.962 sum 9.682 -11.371 1.846 15.048 Atomic orbital electron populations 1.70031 1.07411 1.28466 1.50046 1.25816 0.95886 1.02838 0.94015 0.85360 0.78278 0.78085 0.78775 1.19220 1.19846 1.19721 1.20978 0.92588 0.90536 1.52825 0.93533 1.18001 0.91274 0.87305 0.98297 1.23870 0.92033 0.92301 0.80783 1.68555 1.13857 1.12009 1.29243 1.23432 0.86710 0.86832 0.97822 1.21540 1.03050 1.00337 0.97198 1.70525 1.18134 1.17638 1.14517 1.30115 0.89689 0.89250 0.87859 1.84465 1.49734 1.40756 1.34960 1.20768 0.94653 0.93212 0.86943 1.67104 1.13954 1.11038 1.32927 0.92032 0.94058 0.95213 0.76282 0.65471 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -54.59 13.29 21.45 0.28 -54.30 14 2 C 0.01 0.80 5.46 84.66 0.46 1.27 14 3 Si 0.97 44.42 29.54 68.60 2.03 46.44 14 4 H -0.27 -11.70 7.11 99.48 0.71 -10.99 14 5 H -0.27 -11.97 7.11 99.48 0.71 -11.26 14 6 H -0.27 -12.29 7.11 99.48 0.71 -11.58 14 7 C -0.53 -30.95 9.09 25.60 0.23 -30.72 14 8 H 0.05 2.73 7.74 -2.91 -0.02 2.70 14 9 C 0.09 4.96 5.39 29.10 0.16 5.12 14 10 C 0.37 18.13 6.82 138.70 0.95 19.07 14 11 N -0.52 -22.20 10.31 -187.11 -1.93 -24.13 14 12 C 0.23 7.48 11.38 84.92 0.97 8.45 14 13 C -0.11 -3.51 7.30 39.44 0.29 -3.22 14 14 N -0.48 -12.30 11.33 -308.14 -3.49 -15.79 14 15 C 0.26 4.76 13.13 130.52 1.71 6.47 14 16 O -0.21 -6.15 10.75 -6.36 -0.07 -6.22 14 17 C 0.23 8.89 8.66 85.21 0.74 9.63 14 18 N -0.53 -24.61 10.35 -300.95 -3.11 -27.73 14 19 H 0.27 14.92 8.31 -92.71 -0.77 14.15 14 20 H 0.04 2.35 8.14 -2.39 -0.02 2.33 14 21 H 0.03 1.73 8.14 -2.39 -0.02 1.71 14 22 H 0.22 5.05 8.06 -2.91 -0.02 5.03 14 23 H 0.33 0.56 8.06 -2.91 -0.02 0.53 14 Total: -1.00 -73.52 222.57 0.45 -73.06 By element: Atomic # 1 Polarization: -8.63 SS G_CDS: 1.24 Total: -7.39 kcal Atomic # 6 Polarization: 10.55 SS G_CDS: 5.50 Total: 16.06 kcal Atomic # 7 Polarization: -113.71 SS G_CDS: -8.25 Total: -121.96 kcal Atomic # 8 Polarization: -6.15 SS G_CDS: -0.07 Total: -6.22 kcal Atomic # 14 Polarization: 44.42 SS G_CDS: 2.03 Total: 46.44 kcal Total: -73.52 0.45 -73.06 kcal The number of atoms in the molecule is 23 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260731955.mol2 23 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 113.210 kcal (2) G-P(sol) polarization free energy of solvation -73.516 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 39.695 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.454 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.062 kcal (6) G-S(sol) free energy of system = (1) + (5) 40.149 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.16 seconds