Wall clock time and date at job start Mon Mar 30 2020 02:07:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86802 * 120.00028 * 2 1 4 4 H 1.48499 * 109.47073 * 269.99832 * 3 2 1 5 5 H 1.48497 * 109.47159 * 29.99987 * 3 2 1 6 6 H 1.48496 * 109.46847 * 149.99935 * 3 2 1 7 7 C 1.37873 * 119.99717 * 180.02562 * 2 1 3 8 8 H 1.08001 * 120.00373 * 359.97438 * 7 2 1 9 9 C 1.50704 * 119.99889 * 180.02562 * 7 2 1 10 10 C 1.50702 * 109.47237 * 180.02562 * 9 7 2 11 11 N 1.29950 * 124.84681 * 89.99686 * 10 9 7 12 12 C 1.35779 * 108.70513 * 179.97438 * 11 10 9 13 13 C 1.39451 * 135.01837 * 180.02562 * 12 11 10 14 14 N 1.32266 * 118.57001 * 180.02562 * 13 12 11 15 15 C 1.32054 * 121.22478 * 359.97438 * 14 13 12 16 16 N 1.31707 * 122.40127 * 0.02562 * 15 14 13 17 17 C 1.32478 * 120.50289 * 359.97438 * 16 15 14 18 18 O 1.34355 * 124.84028 * 269.97753 * 10 9 7 19 19 H 0.97008 * 120.00186 * 0.02562 * 1 2 3 20 20 H 1.08993 * 109.47094 * 59.99520 * 9 7 2 21 21 H 1.09004 * 109.46864 * 299.99445 * 9 7 2 22 22 H 1.08003 * 120.71649 * 359.97308 * 13 12 11 23 23 H 1.07999 * 118.79516 * 179.72432 * 15 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4967 2.0464 -1.4001 5 1 1.4466 2.6527 0.7000 6 1 3.5466 1.4401 0.7000 7 6 2.0044 -1.1940 -0.0005 8 1 1.4644 -2.1294 -0.0005 9 6 3.5115 -1.1941 0.0000 10 6 4.0138 -2.6149 -0.0013 11 7 4.2617 -3.3138 -1.0685 12 6 4.6968 -4.5437 -0.6922 13 6 5.1049 -5.6944 -1.3660 14 7 5.4760 -6.7459 -0.6546 15 6 5.4648 -6.7178 0.6656 16 7 5.0878 -5.6548 1.3457 17 6 4.6999 -4.5560 0.7154 18 8 4.2696 -3.3397 1.1007 19 1 -0.4851 0.8401 -0.0004 20 1 3.8744 -0.6808 0.8904 21 1 3.8751 -0.6797 -0.8895 22 1 5.1168 -5.7266 -2.4455 23 1 5.7716 -7.6003 1.2073 RHF calculation, no. of doubly occupied orbitals= 36 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260808974.mol2 23 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:07:49 Heat of formation + Delta-G solvation = 66.209505 kcal Electronic energy + Delta-G solvation = -12327.292739 eV Core-core repulsion = 9949.837781 eV Total energy + Delta-G solvation = -2377.454957 eV No. of doubly occupied orbitals = 36 Molecular weight (most abundant/longest-lived isotopes) = 205.059 amu Computer time = 0.15 seconds Orbital eigenvalues (eV) -43.26883 -39.88139 -34.95680 -33.53780 -33.35280 -31.34345 -29.01917 -24.92920 -24.19989 -22.77257 -21.15392 -19.02321 -17.71988 -17.41606 -16.56812 -16.51394 -14.70405 -14.29722 -14.00197 -13.61983 -13.48145 -12.51360 -12.42233 -11.96049 -11.61717 -11.04924 -10.78578 -10.52854 -10.30462 -10.24577 -9.74402 -9.22825 -8.83860 -8.54190 -6.32008 -4.37800 0.54883 1.01037 2.19879 2.69927 3.15251 3.21398 3.23458 3.73917 3.90779 4.16262 4.18539 4.22292 4.47875 4.99146 5.25371 5.34529 5.86340 6.13860 6.22895 6.48452 6.55287 6.82691 7.20137 7.76716 8.00098 8.13700 8.66172 9.20762 10.79856 Molecular weight = 205.06amu Principal moments of inertia in cm(-1) A = 0.074024 B = 0.007699 C = 0.007667 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 378.164668 B = 3635.923295 C = 3650.911410 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.884 5.884 2 C 0.081 3.919 3 Si 0.878 3.122 4 H -0.270 1.270 5 H -0.280 1.280 6 H -0.262 1.262 7 C -0.533 4.533 8 H 0.078 0.922 9 C 0.067 3.933 10 C 0.331 3.669 11 N -0.483 5.483 12 C -0.062 4.062 13 C 0.211 3.789 14 N -0.516 5.516 15 C 0.301 3.699 16 N -0.489 5.489 17 C 0.235 3.765 18 O -0.195 6.195 19 H 0.271 0.729 20 H 0.059 0.941 21 H 0.072 0.928 22 H 0.181 0.819 23 H 0.211 0.789 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.153 -6.951 -0.400 12.311 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.520 5.520 2 C -0.124 4.124 3 Si 0.704 3.296 4 H -0.195 1.195 5 H -0.206 1.206 6 H -0.186 1.186 7 C -0.571 4.571 8 H 0.096 0.904 9 C 0.028 3.972 10 C 0.121 3.879 11 N -0.211 5.211 12 C -0.180 4.180 13 C 0.038 3.962 14 N -0.232 5.232 15 C 0.013 3.987 16 N -0.212 5.212 17 C 0.047 3.953 18 O -0.082 6.082 19 H 0.081 0.919 20 H 0.077 0.923 21 H 0.090 0.910 22 H 0.198 0.802 23 H 0.227 0.773 Dipole moment (debyes) X Y Z Total from point charges 10.154 -7.328 -0.440 12.530 hybrid contribution 0.028 1.272 0.345 1.318 sum 10.182 -6.055 -0.096 11.847 Atomic orbital electron populations 1.69856 1.06260 1.27675 1.48247 1.24853 0.94867 0.99000 0.93658 0.86802 0.80388 0.83271 0.79162 1.19476 1.20574 1.18641 1.20588 0.86396 0.95682 1.54472 0.90355 1.18785 0.98540 0.79165 1.00660 1.27865 0.87632 0.96468 0.75933 1.70783 1.20093 1.01698 1.28566 1.21668 1.05571 0.96628 0.94143 1.22575 0.88441 0.84132 1.01007 1.68449 1.17406 1.28243 1.09100 1.24885 0.92665 0.94043 0.87070 1.67072 1.14373 0.97491 1.42284 1.20463 0.97129 0.87237 0.90485 1.84555 1.66449 1.19653 1.37578 0.91915 0.92288 0.91036 0.80244 0.77310 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -25.63 13.96 55.43 0.77 -24.85 14 2 C 0.08 2.18 5.47 -17.82 -0.10 2.09 14 3 Si 0.88 19.44 27.47 -169.99 -4.67 14.77 14 4 H -0.27 -5.85 7.11 56.52 0.40 -5.45 14 5 H -0.28 -6.20 7.11 56.52 0.40 -5.80 14 6 H -0.26 -5.40 6.54 56.52 0.37 -5.03 14 7 C -0.53 -14.34 9.65 -34.44 -0.33 -14.67 14 8 H 0.08 2.35 7.98 -52.49 -0.42 1.93 14 9 C 0.07 1.48 4.67 -29.03 -0.14 1.34 14 10 C 0.33 7.16 7.43 -13.07 -0.10 7.07 14 11 N -0.48 -10.11 11.33 -8.65 -0.10 -10.21 14 12 C -0.06 -1.16 7.30 -84.71 -0.62 -1.78 14 13 C 0.21 3.11 11.38 -16.91 -0.19 2.92 14 14 N -0.52 -7.19 10.42 -14.34 -0.15 -7.34 14 15 C 0.30 4.04 12.25 -92.01 -1.13 2.92 14 16 N -0.49 -8.37 10.46 -14.51 -0.15 -8.52 14 17 C 0.24 4.59 8.66 -16.32 -0.14 4.45 14 18 O -0.20 -4.16 10.75 4.63 0.05 -4.11 14 19 H 0.27 7.26 8.31 -40.82 -0.34 6.92 14 20 H 0.06 1.23 7.20 -51.93 -0.37 0.86 14 21 H 0.07 1.49 7.57 -51.93 -0.39 1.10 14 22 H 0.18 2.05 8.06 -52.48 -0.42 1.63 14 23 H 0.21 1.80 8.06 -52.49 -0.42 1.38 14 LS Contribution 219.13 15.07 3.30 3.30 Total: -1.00 -30.20 219.13 -4.88 -35.08 By element: Atomic # 1 Polarization: -1.26 SS G_CDS: -1.20 Total: -2.46 kcal Atomic # 6 Polarization: 7.08 SS G_CDS: -2.74 Total: 4.34 kcal Atomic # 7 Polarization: -51.29 SS G_CDS: 0.37 Total: -50.92 kcal Atomic # 8 Polarization: -4.16 SS G_CDS: 0.05 Total: -4.11 kcal Atomic # 14 Polarization: 19.44 SS G_CDS: -4.67 Total: 14.77 kcal Total LS contribution 3.30 Total: 3.30 kcal Total: -30.20 -4.88 -35.08 kcal The number of atoms in the molecule is 23 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260808974.mol2 23 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 101.289 kcal (2) G-P(sol) polarization free energy of solvation -30.197 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 71.093 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.883 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.080 kcal (6) G-S(sol) free energy of system = (1) + (5) 66.210 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.15 seconds