Wall clock time and date at job start Mon Mar 30 2020 02:10:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31526 * 1 3 3 Si 1.86806 * 119.99881 * 2 1 4 4 H 1.48496 * 109.46936 * 270.00172 * 3 2 1 5 5 H 1.48502 * 109.46786 * 30.00061 * 3 2 1 6 6 H 1.48494 * 109.47079 * 149.99722 * 3 2 1 7 7 C 1.38860 * 120.00209 * 180.02562 * 2 1 3 8 8 H 1.08003 * 120.00088 * 180.02562 * 7 2 1 9 9 N 1.36820 * 119.99855 * 359.97438 * 7 2 1 10 10 C 1.38485 * 120.00157 * 180.02562 * 9 7 2 11 11 C 1.39396 * 121.06558 * 0.02562 * 10 9 7 12 12 C 1.38137 * 119.26856 * 180.02562 * 11 10 9 13 13 N 1.31859 * 121.64670 * 0.02562 * 12 11 10 14 14 C 1.32558 * 121.93454 * 359.97438 * 13 12 11 15 15 O 1.34810 * 133.08923 * 179.97438 * 14 13 12 16 16 N 1.41329 * 109.40232 * 179.97438 * 15 14 13 17 17 C 1.29894 * 109.68013 * 359.97438 * 16 15 14 18 18 C 1.40411 * 120.01145 * 359.97438 * 14 13 12 19 19 H 0.97003 * 120.00015 * 0.02562 * 1 2 3 20 20 H 0.96998 * 120.00455 * 0.02562 * 9 7 2 21 21 H 1.07997 * 120.36743 * 0.04841 * 11 10 9 22 22 H 1.08003 * 119.17261 * 180.02562 * 12 11 10 23 23 H 1.08007 * 126.33055 * 179.73261 * 17 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3153 0.0000 0.0000 3 14 2.2493 1.6178 0.0000 4 1 2.4967 2.0465 -1.4000 5 1 1.4466 2.6527 0.7001 6 1 3.5467 1.4403 0.7001 7 6 2.0096 -1.2025 -0.0005 8 1 3.0896 -1.2025 -0.0001 9 7 1.3255 -2.3874 -0.0005 10 6 2.0179 -3.5868 -0.0005 11 6 3.4116 -3.6127 0.0000 12 6 4.0645 -4.8301 -0.0006 13 7 3.4022 -5.9703 -0.0021 14 6 2.0772 -6.0115 -0.0027 15 8 1.1874 -7.0242 -0.0046 16 7 -0.1239 -6.4970 -0.0037 17 6 -0.0735 -5.1990 -0.0007 18 6 1.3374 -4.8181 -0.0011 19 1 -0.4850 0.8401 -0.0004 20 1 0.3555 -2.3875 -0.0005 21 1 3.9749 -2.6912 0.0012 22 1 5.1443 -4.8484 0.0003 23 1 -0.9181 -4.5259 -0.0035 RHF calculation, no. of doubly occupied orbitals= 36 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000261114226.mol2 23 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:10:57 Heat of formation + Delta-G solvation = 72.469656 kcal Electronic energy + Delta-G solvation = -12461.843459 eV Core-core repulsion = 10084.659962 eV Total energy + Delta-G solvation = -2377.183497 eV No. of doubly occupied orbitals = 36 Molecular weight (most abundant/longest-lived isotopes) = 205.059 amu Computer time = 0.15 seconds Orbital eigenvalues (eV) -40.87187 -37.97353 -35.92035 -33.13965 -32.16696 -29.41032 -29.00896 -25.34611 -23.05037 -22.12170 -20.82685 -18.52244 -17.72474 -16.40223 -15.71072 -15.34405 -14.81359 -14.38997 -13.58751 -13.20744 -12.92205 -12.63514 -12.09113 -11.82322 -11.68619 -11.19565 -10.96179 -10.67926 -10.49308 -10.30737 -9.23747 -8.58001 -8.17992 -7.39868 -7.07899 -4.26248 1.50562 2.28098 2.81085 2.93162 2.96298 3.00147 3.09982 3.68048 4.39741 4.61397 4.77469 4.84379 5.20164 5.60224 5.66717 6.03480 6.39560 6.40908 6.66272 6.83074 6.91461 7.20508 7.41242 7.99448 8.23083 8.74432 8.84039 8.94169 10.05789 Molecular weight = 205.06amu Principal moments of inertia in cm(-1) A = 0.051297 B = 0.009432 C = 0.007990 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 545.713323 B = 2967.841452 C = 3503.712787 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.868 5.868 2 C 0.031 3.969 3 Si 0.942 3.058 4 H -0.271 1.271 5 H -0.277 1.277 6 H -0.263 1.263 7 C -0.310 4.310 8 H 0.115 0.885 9 N -0.501 5.501 10 C 0.262 3.738 11 C -0.298 4.298 12 C 0.183 3.817 13 N -0.578 5.578 14 C 0.334 3.666 15 O -0.107 6.107 16 N -0.333 5.333 17 C 0.127 3.873 18 C -0.356 4.356 19 H 0.285 0.715 20 H 0.404 0.596 21 H 0.132 0.868 22 H 0.151 0.849 23 H 0.194 0.806 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.473 0.785 0.007 2.594 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.501 5.501 2 C -0.177 4.177 3 Si 0.767 3.233 4 H -0.196 1.196 5 H -0.202 1.202 6 H -0.187 1.187 7 C -0.441 4.441 8 H 0.132 0.868 9 N -0.096 5.096 10 C 0.126 3.874 11 C -0.326 4.326 12 C 0.031 3.969 13 N -0.310 5.310 14 C 0.149 3.851 15 O -0.108 6.108 16 N -0.084 5.084 17 C -0.069 4.069 18 C -0.372 4.372 19 H 0.095 0.905 20 H 0.240 0.760 21 H 0.150 0.850 22 H 0.168 0.832 23 H 0.210 0.790 Dipole moment (debyes) X Y Z Total from point charges 2.004 -0.663 0.009 2.111 hybrid contribution -0.252 2.458 -0.004 2.471 sum 1.752 1.795 0.005 2.508 Atomic orbital electron populations 1.69639 1.06408 1.30003 1.44049 1.25557 0.95858 1.00823 0.95472 0.85647 0.79319 0.79259 0.79088 1.19590 1.20200 1.18688 1.20021 0.93827 0.82106 1.48101 0.86783 1.41093 1.08931 1.02636 1.56954 1.17283 0.91354 0.83725 0.95045 1.21132 0.92308 0.99272 1.19905 1.22046 0.98506 0.86000 0.90312 1.66676 1.03473 1.30556 1.30253 1.20236 0.89461 0.85481 0.89873 1.89019 1.12291 1.27882 1.81646 1.79891 0.91927 1.10542 1.26086 1.25451 0.96703 0.93593 0.91188 1.20538 0.91731 0.95001 1.29901 0.90456 0.76027 0.85041 0.83161 0.78975 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -20.29 13.05 55.49 0.72 -19.57 14 2 C 0.03 0.69 5.50 -17.45 -0.10 0.59 14 3 Si 0.94 17.33 29.55 -169.99 -5.02 12.30 14 4 H -0.27 -4.97 7.11 56.52 0.40 -4.57 14 5 H -0.28 -5.11 7.11 56.52 0.40 -4.71 14 6 H -0.26 -4.72 7.11 56.52 0.40 -4.32 14 7 C -0.31 -6.98 9.57 -15.10 -0.14 -7.12 14 8 H 0.11 2.43 5.76 -52.48 -0.30 2.13 14 9 N -0.50 -11.04 5.41 -9.32 -0.05 -11.09 14 10 C 0.26 5.63 6.68 -83.50 -0.56 5.07 14 11 C -0.30 -5.91 9.37 -39.19 -0.37 -6.27 14 12 C 0.18 3.44 11.13 -17.58 -0.20 3.24 14 13 N -0.58 -12.41 10.38 -13.08 -0.14 -12.55 14 14 C 0.33 7.48 8.64 -16.42 -0.14 7.34 14 15 O -0.11 -2.41 12.06 7.72 0.09 -2.31 14 16 N -0.33 -6.83 12.82 31.86 0.41 -6.42 14 17 C 0.13 2.41 12.16 -15.20 -0.18 2.22 14 18 C -0.36 -7.61 6.28 -104.98 -0.66 -8.27 14 19 H 0.29 6.26 8.31 -40.82 -0.34 5.92 14 20 H 0.40 8.84 7.79 -40.82 -0.32 8.53 14 21 H 0.13 2.43 6.09 -52.49 -0.32 2.11 14 22 H 0.15 2.20 8.06 -52.48 -0.42 1.77 14 23 H 0.19 2.91 8.06 -52.48 -0.42 2.48 14 LS Contribution 218.00 15.07 3.29 3.29 Total: -1.00 -26.25 218.00 -3.97 -30.21 By element: Atomic # 1 Polarization: 10.26 SS G_CDS: -0.92 Total: 9.34 kcal Atomic # 6 Polarization: -0.85 SS G_CDS: -2.35 Total: -3.20 kcal Atomic # 7 Polarization: -50.58 SS G_CDS: 0.95 Total: -49.63 kcal Atomic # 8 Polarization: -2.41 SS G_CDS: 0.09 Total: -2.31 kcal Atomic # 14 Polarization: 17.33 SS G_CDS: -5.02 Total: 12.30 kcal Total LS contribution 3.29 Total: 3.29 kcal Total: -26.25 -3.97 -30.21 kcal The number of atoms in the molecule is 23 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261114226.mol2 23 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 102.683 kcal (2) G-P(sol) polarization free energy of solvation -26.247 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 76.436 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.967 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -30.213 kcal (6) G-S(sol) free energy of system = (1) + (5) 72.470 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.15 seconds