Wall clock time and date at job start Mon Mar 30 2020 02:10:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31526 * 1 3 3 Si 1.86806 * 119.99881 * 2 1 4 4 H 1.48496 * 109.46936 * 270.00172 * 3 2 1 5 5 H 1.48502 * 109.46786 * 30.00061 * 3 2 1 6 6 H 1.48494 * 109.47079 * 149.99722 * 3 2 1 7 7 C 1.38860 * 120.00209 * 180.02562 * 2 1 3 8 8 H 1.08003 * 120.00088 * 180.02562 * 7 2 1 9 9 N 1.36820 * 119.99855 * 359.97438 * 7 2 1 10 10 C 1.38485 * 120.00157 * 180.02562 * 9 7 2 11 11 C 1.39396 * 121.06558 * 0.02562 * 10 9 7 12 12 C 1.38137 * 119.26856 * 180.02562 * 11 10 9 13 13 N 1.31859 * 121.64670 * 0.02562 * 12 11 10 14 14 C 1.32558 * 121.93454 * 359.97438 * 13 12 11 15 15 O 1.34810 * 133.08923 * 179.97438 * 14 13 12 16 16 N 1.41329 * 109.40232 * 179.97438 * 15 14 13 17 17 C 1.29894 * 109.68013 * 359.97438 * 16 15 14 18 18 C 1.40411 * 120.01145 * 359.97438 * 14 13 12 19 19 H 0.97003 * 120.00015 * 0.02562 * 1 2 3 20 20 H 0.96998 * 120.00455 * 0.02562 * 9 7 2 21 21 H 1.07997 * 120.36743 * 0.04841 * 11 10 9 22 22 H 1.08003 * 119.17261 * 180.02562 * 12 11 10 23 23 H 1.08007 * 126.33055 * 179.73261 * 17 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3153 0.0000 0.0000 3 14 2.2493 1.6178 0.0000 4 1 2.4967 2.0465 -1.4000 5 1 1.4466 2.6527 0.7001 6 1 3.5467 1.4403 0.7001 7 6 2.0096 -1.2025 -0.0005 8 1 3.0896 -1.2025 -0.0001 9 7 1.3255 -2.3874 -0.0005 10 6 2.0179 -3.5868 -0.0005 11 6 3.4116 -3.6127 0.0000 12 6 4.0645 -4.8301 -0.0006 13 7 3.4022 -5.9703 -0.0021 14 6 2.0772 -6.0115 -0.0027 15 8 1.1874 -7.0242 -0.0046 16 7 -0.1239 -6.4970 -0.0037 17 6 -0.0735 -5.1990 -0.0007 18 6 1.3374 -4.8181 -0.0011 19 1 -0.4850 0.8401 -0.0004 20 1 0.3555 -2.3875 -0.0005 21 1 3.9749 -2.6912 0.0012 22 1 5.1443 -4.8484 0.0003 23 1 -0.9181 -4.5259 -0.0035 RHF calculation, no. of doubly occupied orbitals= 36 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261114226.mol2 23 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:10:57 Heat of formation + Delta-G solvation = 54.087523 kcal Electronic energy + Delta-G solvation = -12462.640568 eV Core-core repulsion = 10084.659962 eV Total energy + Delta-G solvation = -2377.980606 eV No. of doubly occupied orbitals = 36 Molecular weight (most abundant/longest-lived isotopes) = 205.059 amu Computer time = 0.17 seconds Orbital eigenvalues (eV) -42.50858 -39.59983 -37.54968 -34.78030 -33.81414 -31.00775 -30.65768 -27.01643 -24.62938 -23.75500 -22.42498 -20.18404 -19.33336 -18.00843 -17.33861 -17.01182 -16.35821 -16.00430 -15.13104 -14.71516 -14.52999 -14.27769 -13.65886 -13.39561 -13.27604 -12.71873 -12.58200 -12.14118 -12.08800 -11.91650 -10.87682 -10.21544 -9.80207 -9.05771 -8.72213 -5.97703 -0.08134 0.63607 1.26798 1.45215 1.45843 1.52880 1.57447 2.17214 2.77132 2.99128 3.20473 3.23382 3.62331 4.04025 4.13971 4.49655 4.79640 4.84852 5.10760 5.23007 5.29074 5.58938 5.83876 6.34666 6.56700 7.10168 7.22560 7.27390 8.42746 Molecular weight = 205.06amu Principal moments of inertia in cm(-1) A = 0.051297 B = 0.009432 C = 0.007990 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 545.713323 B = 2967.841452 C = 3503.712787 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.902 5.902 2 C -0.009 4.009 3 Si 1.004 2.996 4 H -0.270 1.270 5 H -0.280 1.280 6 H -0.254 1.254 7 C -0.330 4.330 8 H 0.123 0.877 9 N -0.513 5.513 10 C 0.257 3.743 11 C -0.305 4.305 12 C 0.191 3.809 13 N -0.590 5.590 14 C 0.313 3.687 15 O -0.129 6.129 16 N -0.337 5.337 17 C 0.141 3.859 18 C -0.370 4.370 19 H 0.286 0.714 20 H 0.401 0.599 21 H 0.146 0.854 22 H 0.197 0.803 23 H 0.230 0.770 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.467 1.378 0.024 3.731 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.536 5.536 2 C -0.213 4.213 3 Si 0.826 3.174 4 H -0.195 1.195 5 H -0.205 1.205 6 H -0.177 1.177 7 C -0.460 4.460 8 H 0.140 0.860 9 N -0.109 5.109 10 C 0.122 3.878 11 C -0.333 4.333 12 C 0.039 3.961 13 N -0.322 5.322 14 C 0.129 3.871 15 O -0.128 6.128 16 N -0.091 5.091 17 C -0.056 4.056 18 C -0.385 4.385 19 H 0.096 0.904 20 H 0.236 0.764 21 H 0.164 0.836 22 H 0.213 0.787 23 H 0.246 0.754 Dipole moment (debyes) X Y Z Total from point charges 3.030 -0.103 0.026 3.032 hybrid contribution -0.538 2.133 -0.011 2.200 sum 2.493 2.030 0.015 3.215 Atomic orbital electron populations 1.69716 1.07632 1.30646 1.45652 1.26370 0.96498 1.03485 0.94959 0.84724 0.78344 0.75422 0.78893 1.19512 1.20508 1.17734 1.20339 0.94402 0.82488 1.48732 0.85966 1.41092 1.08772 1.02722 1.58329 1.17612 0.92233 0.83642 0.94305 1.21427 0.91843 1.00416 1.19637 1.22761 1.00386 0.84770 0.88162 1.66769 1.03271 1.31935 1.30237 1.20539 0.90053 0.85856 0.90689 1.88986 1.13057 1.28660 1.82118 1.79886 0.91108 1.11310 1.26817 1.25999 0.96968 0.93409 0.89204 1.20774 0.92815 0.94804 1.30089 0.90420 0.76410 0.83610 0.78668 0.75409 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -42.04 13.05 21.65 0.28 -41.75 14 2 C -0.01 -0.40 5.50 84.89 0.47 0.07 14 3 Si 1.00 34.54 29.55 68.60 2.03 36.57 14 4 H -0.27 -9.17 7.11 99.48 0.71 -8.46 14 5 H -0.28 -9.65 7.11 99.48 0.71 -8.95 14 6 H -0.25 -8.25 7.11 99.48 0.71 -7.55 14 7 C -0.33 -14.54 9.57 84.06 0.80 -13.73 14 8 H 0.12 5.02 5.76 -2.91 -0.02 5.00 14 9 N -0.51 -22.26 5.41 -183.39 -0.99 -23.26 14 10 C 0.26 10.74 6.68 38.97 0.26 11.00 14 11 C -0.31 -11.48 9.37 22.52 0.21 -11.27 14 12 C 0.19 6.66 11.13 84.66 0.94 7.60 14 13 N -0.59 -24.41 10.38 -308.48 -3.20 -27.61 14 14 C 0.31 13.76 8.64 85.11 0.74 14.50 14 15 O -0.13 -5.75 12.06 30.03 0.36 -5.39 14 16 N -0.34 -13.55 12.82 -53.10 -0.68 -14.23 14 17 C 0.14 5.16 12.16 87.03 1.06 6.21 14 18 C -0.37 -15.42 6.28 -20.10 -0.13 -15.55 14 19 H 0.29 12.55 8.31 -92.71 -0.77 11.78 14 20 H 0.40 17.45 7.79 -92.71 -0.72 16.73 14 21 H 0.15 5.02 6.09 -2.91 -0.02 5.01 14 22 H 0.20 4.90 8.06 -2.91 -0.02 4.88 14 23 H 0.23 6.43 8.06 -2.91 -0.02 6.41 14 Total: -1.00 -54.71 218.00 2.70 -52.01 By element: Atomic # 1 Polarization: 24.29 SS G_CDS: 0.55 Total: 24.83 kcal Atomic # 6 Polarization: -5.52 SS G_CDS: 4.35 Total: -1.17 kcal Atomic # 7 Polarization: -102.26 SS G_CDS: -4.59 Total: -106.85 kcal Atomic # 8 Polarization: -5.75 SS G_CDS: 0.36 Total: -5.39 kcal Atomic # 14 Polarization: 34.54 SS G_CDS: 2.03 Total: 36.57 kcal Total: -54.71 2.70 -52.01 kcal The number of atoms in the molecule is 23 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261114226.mol2 23 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 106.097 kcal (2) G-P(sol) polarization free energy of solvation -54.707 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 51.390 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.698 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -52.009 kcal (6) G-S(sol) free energy of system = (1) + (5) 54.088 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.17 seconds