Wall clock time and date at job start Mon Mar 30 2020 02:07:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31557 * 1 3 3 Si 1.86795 * 120.00138 * 2 1 4 4 H 1.48498 * 109.47217 * 270.00121 * 3 2 1 5 5 H 1.48505 * 109.46805 * 30.00109 * 3 2 1 6 6 H 1.48497 * 109.47287 * 149.99613 * 3 2 1 7 7 C 1.38824 * 119.99787 * 179.97438 * 2 1 3 8 8 H 1.07996 * 119.99660 * 180.02562 * 7 2 1 9 9 N 1.36888 * 120.00251 * 0.02562 * 7 2 1 10 10 C 1.38699 * 119.99771 * 185.13327 * 9 7 2 11 11 C 1.38877 * 119.39715 * 354.25015 * 10 9 7 12 12 C 1.38771 * 118.84861 * 180.29559 * 11 10 9 13 13 O 1.34453 * 134.53572 * 179.71920 * 12 11 10 14 14 N 1.41423 * 109.32444 * 180.02562 * 13 12 11 15 15 C 1.29846 * 109.80853 * 359.45492 * 14 13 12 16 16 C 1.41049 * 118.31776 * 359.46960 * 12 11 10 17 17 C 1.39447 * 119.20995 * 0.53234 * 16 12 11 18 18 N 1.31603 * 120.29228 * 359.72643 * 17 16 12 19 19 H 0.97003 * 119.99996 * 0.02562 * 1 2 3 20 20 H 0.96999 * 119.99319 * 5.13597 * 9 7 2 21 21 H 1.08005 * 120.56992 * 0.02562 * 11 10 9 22 22 H 1.08005 * 126.28607 * 179.90233 * 15 14 13 23 23 H 1.08001 * 119.85077 * 179.75321 * 17 16 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3156 0.0000 0.0000 3 14 2.2496 1.6177 0.0000 4 1 2.4971 2.0464 -1.4000 5 1 1.4470 2.6526 0.7001 6 1 3.5471 1.4401 0.7001 7 6 2.0096 -1.2023 0.0005 8 1 3.0896 -1.2023 0.0010 9 7 1.3252 -2.3878 0.0005 10 6 2.0146 -3.5865 0.1085 11 6 3.4032 -3.5779 0.0950 12 6 4.0813 -4.7843 0.1976 13 8 5.3782 -5.1388 0.2129 14 7 5.4778 -6.5437 0.3410 15 6 4.2906 -7.0640 0.4165 16 6 3.3251 -5.9683 0.3228 17 6 1.9329 -5.8892 0.3280 18 7 1.3338 -4.7222 0.2227 19 1 -0.4850 0.8401 -0.0004 20 1 0.3582 -2.3894 -0.0750 21 1 3.9459 -2.6487 0.0019 22 1 4.0580 -8.1138 0.5178 23 1 1.3436 -6.7897 0.4194 RHF calculation, no. of doubly occupied orbitals= 36 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000261150847.mol2 23 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:07:30 Heat of formation + Delta-G solvation = 75.188607 kcal Electronic energy + Delta-G solvation = -12334.705322 eV Core-core repulsion = 9957.639727 eV Total energy + Delta-G solvation = -2377.065594 eV No. of doubly occupied orbitals = 36 Molecular weight (most abundant/longest-lived isotopes) = 205.059 amu Computer time = 0.16 seconds Orbital eigenvalues (eV) -40.87216 -38.24204 -35.36453 -32.93730 -32.05081 -30.48222 -28.28776 -25.31011 -23.01867 -21.70724 -21.33895 -18.37965 -17.61869 -16.31658 -15.48544 -15.17386 -14.97401 -14.19918 -13.71464 -13.64950 -13.06867 -12.89518 -11.99307 -11.52138 -11.24045 -11.10586 -10.82736 -10.61014 -10.53455 -10.30908 -9.04643 -8.77312 -8.48642 -7.22721 -6.97556 -4.13443 1.47345 2.30354 2.77172 2.99865 3.01763 3.05323 3.27265 3.75756 4.41362 4.57668 4.93298 4.97868 5.17411 5.34958 5.78341 5.96967 6.35781 6.58613 6.71026 6.87008 7.07014 7.09785 7.47193 7.99425 8.23609 8.60441 8.91942 9.30837 10.16217 Molecular weight = 205.06amu Principal moments of inertia in cm(-1) A = 0.056979 B = 0.008517 C = 0.007434 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 491.290294 B = 3286.765026 C = 3765.779480 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.865 5.865 2 C 0.029 3.971 3 Si 0.943 3.057 4 H -0.271 1.271 5 H -0.277 1.277 6 H -0.263 1.263 7 C -0.301 4.301 8 H 0.114 0.886 9 N -0.495 5.495 10 C 0.370 3.630 11 C -0.287 4.287 12 C 0.161 3.839 13 O -0.120 6.120 14 N -0.341 5.341 15 C 0.136 3.864 16 C -0.383 4.383 17 C 0.243 3.757 18 N -0.566 5.566 19 H 0.284 0.716 20 H 0.409 0.591 21 H 0.132 0.868 22 H 0.195 0.805 23 H 0.150 0.850 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.906 -5.508 0.334 5.838 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.498 5.498 2 C -0.179 4.179 3 Si 0.767 3.233 4 H -0.196 1.196 5 H -0.202 1.202 6 H -0.187 1.187 7 C -0.432 4.432 8 H 0.131 0.869 9 N -0.095 5.095 10 C 0.127 3.873 11 C -0.317 4.317 12 C 0.103 3.897 13 O -0.123 6.123 14 N -0.091 5.091 15 C -0.064 4.064 16 C -0.397 4.397 17 C 0.067 3.933 18 N -0.284 5.284 19 H 0.094 0.906 20 H 0.245 0.755 21 H 0.150 0.850 22 H 0.212 0.788 23 H 0.167 0.833 Dipole moment (debyes) X Y Z Total from point charges 2.197 -4.844 0.287 5.327 hybrid contribution -0.033 0.785 -0.024 0.786 sum 2.163 -4.060 0.263 4.608 Atomic orbital electron populations 1.69695 1.06350 1.29835 1.43911 1.25563 0.95879 1.00715 0.95699 0.85641 0.79331 0.79224 0.79079 1.19589 1.20171 1.18678 1.20028 0.93739 0.81860 1.47560 0.86854 1.40953 1.09560 1.01660 1.57310 1.17746 0.87471 0.85878 0.96235 1.19535 0.92298 0.95011 1.24850 1.19855 0.84039 0.94886 0.90944 1.88943 1.21990 1.19431 1.81971 1.79718 1.19797 0.85323 1.24288 1.25563 0.90106 0.99745 0.90963 1.21044 0.96763 0.91348 1.30498 1.21687 0.89028 0.94314 0.88316 1.67111 1.39840 0.97582 1.23895 0.90555 0.75467 0.85014 0.78805 0.83263 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.86 -21.42 13.06 55.49 0.72 -20.70 14 2 C 0.03 0.70 5.50 -17.45 -0.10 0.60 14 3 Si 0.94 18.39 29.55 -169.99 -5.02 13.36 14 4 H -0.27 -5.23 7.11 56.52 0.40 -4.83 14 5 H -0.28 -5.35 7.11 56.52 0.40 -4.95 14 6 H -0.26 -5.06 7.11 56.52 0.40 -4.66 14 7 C -0.30 -7.32 9.53 -15.08 -0.14 -7.47 14 8 H 0.11 2.65 5.64 -52.49 -0.30 2.36 14 9 N -0.50 -11.95 5.43 -11.19 -0.06 -12.01 14 10 C 0.37 8.56 7.59 -154.98 -1.18 7.39 14 11 C -0.29 -6.51 9.34 -39.15 -0.37 -6.88 14 12 C 0.16 3.51 7.55 -38.32 -0.29 3.22 14 13 O -0.12 -2.60 12.05 8.68 0.10 -2.49 14 14 N -0.34 -6.48 12.81 31.90 0.41 -6.08 14 15 C 0.14 2.14 12.31 -15.14 -0.19 1.96 14 16 C -0.38 -7.20 6.39 -105.13 -0.67 -7.87 14 17 C 0.24 4.37 11.26 -17.20 -0.19 4.18 14 18 N -0.57 -12.08 10.36 -12.19 -0.13 -12.20 14 19 H 0.28 6.56 8.31 -40.82 -0.34 6.22 14 20 H 0.41 10.02 8.02 -40.82 -0.33 9.70 14 21 H 0.13 2.95 5.93 -52.48 -0.31 2.64 14 22 H 0.20 1.96 8.06 -52.48 -0.42 1.53 14 23 H 0.15 1.97 8.06 -52.49 -0.42 1.55 14 LS Contribution 218.08 15.07 3.29 3.29 Total: -1.00 -27.43 218.08 -4.72 -32.16 By element: Atomic # 1 Polarization: 10.48 SS G_CDS: -0.92 Total: 9.57 kcal Atomic # 6 Polarization: -1.77 SS G_CDS: -3.12 Total: -4.89 kcal Atomic # 7 Polarization: -51.94 SS G_CDS: 0.95 Total: -50.99 kcal Atomic # 8 Polarization: -2.60 SS G_CDS: 0.10 Total: -2.49 kcal Atomic # 14 Polarization: 18.39 SS G_CDS: -5.02 Total: 13.36 kcal Total LS contribution 3.29 Total: 3.29 kcal Total: -27.43 -4.72 -32.16 kcal The number of atoms in the molecule is 23 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261150847.mol2 23 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 107.344 kcal (2) G-P(sol) polarization free energy of solvation -27.430 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 79.913 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.725 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -32.155 kcal (6) G-S(sol) free energy of system = (1) + (5) 75.189 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.16 seconds