Wall clock time and date at job start Mon Mar 30 2020 02:07:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31557 * 1 3 3 Si 1.86795 * 120.00138 * 2 1 4 4 H 1.48498 * 109.47217 * 270.00121 * 3 2 1 5 5 H 1.48505 * 109.46805 * 30.00109 * 3 2 1 6 6 H 1.48497 * 109.47287 * 149.99613 * 3 2 1 7 7 C 1.38824 * 119.99787 * 179.97438 * 2 1 3 8 8 H 1.07996 * 119.99660 * 180.02562 * 7 2 1 9 9 N 1.36888 * 120.00251 * 0.02562 * 7 2 1 10 10 C 1.38699 * 119.99771 * 185.13327 * 9 7 2 11 11 C 1.38877 * 119.39715 * 354.25015 * 10 9 7 12 12 C 1.38771 * 118.84861 * 180.29559 * 11 10 9 13 13 O 1.34453 * 134.53572 * 179.71920 * 12 11 10 14 14 N 1.41423 * 109.32444 * 180.02562 * 13 12 11 15 15 C 1.29846 * 109.80853 * 359.45492 * 14 13 12 16 16 C 1.41049 * 118.31776 * 359.46960 * 12 11 10 17 17 C 1.39447 * 119.20995 * 0.53234 * 16 12 11 18 18 N 1.31603 * 120.29228 * 359.72643 * 17 16 12 19 19 H 0.97003 * 119.99996 * 0.02562 * 1 2 3 20 20 H 0.96999 * 119.99319 * 5.13597 * 9 7 2 21 21 H 1.08005 * 120.56992 * 0.02562 * 11 10 9 22 22 H 1.08005 * 126.28607 * 179.90233 * 15 14 13 23 23 H 1.08001 * 119.85077 * 179.75321 * 17 16 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3156 0.0000 0.0000 3 14 2.2496 1.6177 0.0000 4 1 2.4971 2.0464 -1.4000 5 1 1.4470 2.6526 0.7001 6 1 3.5471 1.4401 0.7001 7 6 2.0096 -1.2023 0.0005 8 1 3.0896 -1.2023 0.0010 9 7 1.3252 -2.3878 0.0005 10 6 2.0146 -3.5865 0.1085 11 6 3.4032 -3.5779 0.0950 12 6 4.0813 -4.7843 0.1976 13 8 5.3782 -5.1388 0.2129 14 7 5.4778 -6.5437 0.3410 15 6 4.2906 -7.0640 0.4165 16 6 3.3251 -5.9683 0.3228 17 6 1.9329 -5.8892 0.3280 18 7 1.3338 -4.7222 0.2227 19 1 -0.4850 0.8401 -0.0004 20 1 0.3582 -2.3894 -0.0750 21 1 3.9459 -2.6487 0.0019 22 1 4.0580 -8.1138 0.5178 23 1 1.3436 -6.7897 0.4194 RHF calculation, no. of doubly occupied orbitals= 36 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261150847.mol2 23 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:07:30 Heat of formation + Delta-G solvation = 56.891248 kcal Electronic energy + Delta-G solvation = -12335.498755 eV Core-core repulsion = 9957.639727 eV Total energy + Delta-G solvation = -2377.859027 eV No. of doubly occupied orbitals = 36 Molecular weight (most abundant/longest-lived isotopes) = 205.059 amu Computer time = 0.16 seconds Orbital eigenvalues (eV) -42.46484 -39.90766 -37.05065 -34.50768 -33.74241 -32.14147 -29.94193 -27.06169 -24.60366 -23.37011 -22.77924 -20.11730 -19.23855 -17.91400 -17.22670 -16.78160 -16.53480 -15.84926 -15.34251 -15.18952 -14.76825 -14.32957 -13.66465 -13.13720 -12.85097 -12.66633 -12.38081 -12.21534 -12.12675 -11.91215 -10.75537 -10.41472 -10.15471 -8.94196 -8.71209 -5.98386 -0.03000 0.62259 1.30004 1.39611 1.50557 1.53728 1.65782 2.15579 2.73031 2.94676 3.24039 3.52147 3.71973 3.85344 4.23718 4.41125 4.84261 4.96569 5.03268 5.20937 5.36504 5.50151 5.81820 6.42701 6.49520 6.90375 7.17122 7.58225 8.44885 Molecular weight = 205.06amu Principal moments of inertia in cm(-1) A = 0.056979 B = 0.008517 C = 0.007434 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 491.290294 B = 3286.765026 C = 3765.779480 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.904 5.904 2 C -0.011 4.011 3 Si 1.006 2.994 4 H -0.266 1.266 5 H -0.272 1.272 6 H -0.261 1.261 7 C -0.329 4.329 8 H 0.111 0.889 9 N -0.519 5.519 10 C 0.374 3.626 11 C -0.311 4.311 12 C 0.145 3.855 13 O -0.151 6.151 14 N -0.355 5.355 15 C 0.171 3.829 16 C -0.379 4.379 17 C 0.257 3.743 18 N -0.587 5.587 19 H 0.286 0.714 20 H 0.402 0.598 21 H 0.121 0.879 22 H 0.263 0.737 23 H 0.210 0.790 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.374 -8.078 0.614 8.442 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.539 5.539 2 C -0.215 4.215 3 Si 0.828 3.172 4 H -0.191 1.191 5 H -0.197 1.197 6 H -0.185 1.185 7 C -0.459 4.459 8 H 0.129 0.871 9 N -0.121 5.121 10 C 0.132 3.868 11 C -0.341 4.341 12 C 0.086 3.914 13 O -0.151 6.151 14 N -0.109 5.109 15 C -0.028 4.028 16 C -0.392 4.392 17 C 0.083 3.917 18 N -0.307 5.307 19 H 0.096 0.904 20 H 0.237 0.763 21 H 0.138 0.862 22 H 0.279 0.721 23 H 0.226 0.774 Dipole moment (debyes) X Y Z Total from point charges 2.703 -7.437 0.567 7.933 hybrid contribution -0.040 1.143 -0.085 1.147 sum 2.663 -6.294 0.482 6.851 Atomic orbital electron populations 1.69773 1.07527 1.30494 1.46083 1.26383 0.96594 1.03335 0.95155 0.84716 0.78042 0.75402 0.79083 1.19144 1.19698 1.18492 1.20196 0.93812 0.82614 1.49231 0.87138 1.40925 1.09070 1.02018 1.60074 1.18036 0.87644 0.86470 0.94640 1.19577 0.92519 0.95525 1.26513 1.20084 0.84853 0.95749 0.90690 1.88943 1.22141 1.21754 1.82219 1.79771 1.21646 0.83533 1.25963 1.26528 0.87567 1.01654 0.87052 1.21519 0.97450 0.91306 1.28892 1.22649 0.89237 0.94939 0.84857 1.67262 1.40111 0.98020 1.25313 0.90427 0.76305 0.86152 0.72120 0.77374 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -46.47 13.06 21.65 0.28 -46.18 14 2 C -0.01 -0.56 5.50 84.87 0.47 -0.09 14 3 Si 1.01 38.69 29.55 68.60 2.03 40.72 14 4 H -0.27 -9.95 7.11 99.48 0.71 -9.24 14 5 H -0.27 -10.14 7.11 99.48 0.71 -9.43 14 6 H -0.26 -9.79 7.11 99.48 0.71 -9.09 14 7 C -0.33 -16.72 9.53 84.04 0.80 -15.92 14 8 H 0.11 5.47 5.64 -2.91 -0.02 5.46 14 9 N -0.52 -26.07 5.43 -189.31 -1.03 -27.10 14 10 C 0.37 17.53 7.59 132.95 1.01 18.54 14 11 C -0.31 -14.42 9.34 22.55 0.21 -14.21 14 12 C 0.15 6.18 7.55 23.09 0.17 6.35 14 13 O -0.15 -6.41 12.05 33.40 0.40 -6.01 14 14 N -0.36 -12.31 12.81 -52.98 -0.68 -12.99 14 15 C 0.17 4.45 12.31 87.09 1.07 5.52 14 16 C -0.38 -12.83 6.39 -20.19 -0.13 -12.96 14 17 C 0.26 8.17 11.26 85.02 0.96 9.13 14 18 N -0.59 -24.19 10.36 -192.49 -1.99 -26.19 14 19 H 0.29 13.65 8.31 -92.71 -0.77 12.88 14 20 H 0.40 20.64 8.02 -92.71 -0.74 19.90 14 21 H 0.12 5.70 5.93 -2.91 -0.02 5.69 14 22 H 0.26 3.03 8.06 -2.91 -0.02 3.01 14 23 H 0.21 4.08 8.06 -2.91 -0.02 4.06 14 Total: -1.00 -62.25 218.08 4.10 -58.15 By element: Atomic # 1 Polarization: 22.70 SS G_CDS: 0.53 Total: 23.23 kcal Atomic # 6 Polarization: -8.19 SS G_CDS: 4.56 Total: -3.63 kcal Atomic # 7 Polarization: -109.04 SS G_CDS: -3.42 Total: -112.46 kcal Atomic # 8 Polarization: -6.41 SS G_CDS: 0.40 Total: -6.01 kcal Atomic # 14 Polarization: 38.69 SS G_CDS: 2.03 Total: 40.72 kcal Total: -62.25 4.10 -58.15 kcal The number of atoms in the molecule is 23 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261150847.mol2 23 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 115.038 kcal (2) G-P(sol) polarization free energy of solvation -62.246 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 52.792 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.099 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.147 kcal (6) G-S(sol) free energy of system = (1) + (5) 56.891 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.16 seconds