Wall clock time and date at job start Mon Mar 30 2020 02:05:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30855 * 1 3 3 Si 1.86801 * 120.00135 * 2 1 4 4 H 1.48504 * 109.47096 * 240.00221 * 3 2 1 5 5 H 1.48503 * 109.47262 * 0.02562 * 3 2 1 6 6 H 1.48498 * 109.47456 * 120.00491 * 3 2 1 7 7 C 1.39978 * 120.00183 * 180.02562 * 2 1 3 8 8 H 1.08000 * 119.99918 * 197.88292 * 7 2 1 9 9 C 1.40862 * 119.99810 * 17.87753 * 7 2 1 10 10 C 1.40656 * 120.36453 * 24.65805 * 9 7 2 11 11 C 1.37883 * 120.54743 * 180.02562 * 10 9 7 12 12 C 1.38561 * 120.68165 * 359.97438 * 11 10 9 13 13 C 1.38981 * 120.02519 * 0.02562 * 12 11 10 14 14 C 1.46857 * 136.21888 * 180.02562 * 13 12 11 15 15 O 1.21740 * 127.44810 * 359.73316 * 14 13 12 16 16 O 1.34459 * 105.10362 * 179.97438 * 14 13 12 17 17 N 1.20960 * 112.55888 * 0.02562 * 16 14 13 18 18 H 0.96996 * 123.48455 * 179.97438 * 17 16 14 19 19 C 1.35825 * 113.02511 * 359.97438 * 17 16 14 20 20 H 0.97000 * 119.99733 * 359.97438 * 1 2 3 21 21 H 1.08005 * 119.72791 * 0.02562 * 10 9 7 22 22 H 1.08001 * 119.66261 * 179.97438 * 11 10 9 23 23 H 1.07997 * 119.99068 * 179.97438 * 12 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3085 0.0000 0.0000 3 14 2.2426 1.6177 0.0000 4 1 3.0963 1.6964 -1.2126 5 1 1.2776 2.7465 0.0006 6 1 3.0964 1.6964 1.2124 7 6 2.0085 -1.2122 -0.0005 8 1 3.0493 -1.2349 0.2867 9 6 1.3552 -2.4025 -0.3756 10 6 0.2279 -2.3605 -1.2157 11 6 -0.4148 -3.5232 -1.5848 12 6 0.0371 -4.7538 -1.1361 13 6 1.1486 -4.8257 -0.3049 14 6 1.9100 -5.8925 0.3576 15 8 1.6968 -7.0903 0.3147 16 8 2.8902 -5.2600 1.0262 17 7 2.8481 -4.0593 0.8853 18 1 3.4796 -3.4496 1.2980 19 6 1.8251 -3.6534 0.0894 20 1 -0.4850 0.8401 0.0004 21 1 -0.1373 -1.4096 -1.5748 22 1 -1.2794 -3.4743 -2.2302 23 1 -0.4750 -5.6575 -1.4318 RHF calculation, no. of doubly occupied orbitals= 36 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000261252436.mol2 23 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:05:21 Heat of formation + Delta-G solvation = 25.291932 kcal Electronic energy + Delta-G solvation = -12709.491306 eV Core-core repulsion = 10297.969278 eV Total energy + Delta-G solvation = -2411.522028 eV No. of doubly occupied orbitals = 36 Molecular weight (most abundant/longest-lived isotopes) = 205.053 amu Computer time = 0.16 seconds Orbital eigenvalues (eV) -43.55639 -37.40363 -37.18262 -33.86324 -31.90011 -30.08449 -29.13493 -25.66658 -23.13783 -22.17656 -20.31127 -18.49776 -17.37599 -17.01133 -16.56482 -15.28372 -14.79355 -14.65431 -13.27133 -13.12847 -12.89307 -12.68122 -11.98189 -11.64046 -11.33291 -11.18739 -10.67904 -10.53373 -10.01159 -9.40127 -9.32161 -9.03592 -7.84756 -7.04893 -6.77320 -4.47568 1.90336 2.60613 2.93655 2.95806 2.99369 3.07937 3.44213 3.76602 4.34262 4.42081 5.30103 5.42262 5.89039 6.26562 6.47782 6.60142 6.88714 7.03596 7.23074 7.57813 7.75469 7.82280 7.89581 8.20889 8.27331 8.54011 8.57078 9.04030 9.97639 Molecular weight = 205.05amu Principal moments of inertia in cm(-1) A = 0.049710 B = 0.010910 C = 0.009169 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 563.126268 B = 2565.723044 C = 3052.896314 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.788 5.788 2 C 0.077 3.923 3 Si 0.911 3.089 4 H -0.263 1.263 5 H -0.277 1.277 6 H -0.266 1.266 7 C -0.465 4.465 8 H 0.076 0.924 9 C 0.098 3.902 10 C -0.130 4.130 11 C -0.126 4.126 12 C -0.131 4.131 13 C -0.241 4.241 14 C 0.480 3.520 15 O -0.493 6.493 16 O -0.069 6.069 17 N -0.539 5.539 18 H 0.453 0.547 19 C 0.073 3.927 20 H 0.285 0.715 21 H 0.131 0.869 22 H 0.103 0.897 23 H 0.102 0.898 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.451 1.789 -0.253 3.045 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.413 5.413 2 C -0.142 4.142 3 Si 0.735 3.265 4 H -0.187 1.187 5 H -0.202 1.202 6 H -0.190 1.190 7 C -0.495 4.495 8 H 0.095 0.905 9 C 0.093 3.907 10 C -0.152 4.152 11 C -0.146 4.146 12 C -0.152 4.152 13 C -0.248 4.248 14 C 0.329 3.671 15 O -0.384 6.384 16 O -0.087 6.087 17 N -0.212 5.212 18 H 0.302 0.698 19 C -0.031 4.031 20 H 0.096 0.904 21 H 0.148 0.852 22 H 0.121 0.879 23 H 0.120 0.880 Dipole moment (debyes) X Y Z Total from point charges 2.394 1.221 -0.048 2.688 hybrid contribution 0.566 1.030 0.266 1.205 sum 2.960 2.251 0.218 3.725 Atomic orbital electron populations 1.69780 1.07547 1.29796 1.34168 1.25830 0.94768 1.01289 0.92268 0.86308 0.80119 0.80003 0.80033 1.18702 1.20161 1.19018 1.19222 0.97886 0.91251 1.41104 0.90547 1.16592 0.93674 0.87867 0.92607 1.21202 0.97729 0.97546 0.98735 1.20657 0.99973 0.92334 1.01611 1.19585 0.96771 0.96956 1.01846 1.19882 1.03279 0.92081 1.09577 1.20880 0.79198 0.88271 0.78767 1.90893 1.69572 1.13769 1.64150 1.84193 1.51520 1.07495 1.65462 1.39954 1.33574 0.93758 1.53920 0.69765 1.19258 0.91043 0.96432 0.96386 0.90386 0.85153 0.87932 0.87963 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.79 -18.47 10.97 55.55 0.61 -17.86 14 2 C 0.08 1.74 5.13 -17.32 -0.09 1.65 14 3 Si 0.91 16.88 29.60 -169.99 -5.03 11.85 14 4 H -0.26 -4.87 7.11 56.52 0.40 -4.46 14 5 H -0.28 -5.06 7.11 56.52 0.40 -4.66 14 6 H -0.27 -4.87 7.11 56.52 0.40 -4.47 14 7 C -0.47 -10.88 9.04 -37.94 -0.34 -11.22 14 8 H 0.08 1.65 7.91 -52.49 -0.42 1.24 14 9 C 0.10 2.35 5.58 -106.76 -0.60 1.76 14 10 C -0.13 -3.08 8.68 -38.80 -0.34 -3.42 14 11 C -0.13 -2.75 10.01 -39.59 -0.40 -3.15 14 12 C -0.13 -2.92 10.09 -39.19 -0.40 -3.32 14 13 C -0.24 -5.66 6.54 -105.10 -0.69 -6.34 14 14 C 0.48 11.03 8.96 34.22 0.31 11.33 14 15 O -0.49 -12.11 18.06 -18.95 -0.34 -12.45 14 16 O -0.07 -1.41 11.15 -8.06 -0.09 -1.50 14 17 N -0.54 -10.64 6.68 32.61 0.22 -10.42 14 18 H 0.45 7.33 8.96 -40.82 -0.37 6.96 14 19 C 0.07 1.67 7.12 -83.83 -0.60 1.07 14 20 H 0.29 6.10 8.30 -40.82 -0.34 5.76 14 21 H 0.13 3.12 6.15 -52.48 -0.32 2.80 14 22 H 0.10 1.93 8.06 -52.49 -0.42 1.51 14 23 H 0.10 2.09 8.06 -52.49 -0.42 1.67 14 LS Contribution 216.35 15.07 3.26 3.26 Total: -1.00 -26.82 216.35 -5.59 -32.41 By element: Atomic # 1 Polarization: 7.43 SS G_CDS: -1.08 Total: 6.35 kcal Atomic # 6 Polarization: -8.50 SS G_CDS: -3.13 Total: -11.64 kcal Atomic # 7 Polarization: -29.12 SS G_CDS: 0.83 Total: -28.29 kcal Atomic # 8 Polarization: -13.52 SS G_CDS: -0.43 Total: -13.95 kcal Atomic # 14 Polarization: 16.88 SS G_CDS: -5.03 Total: 11.85 kcal Total LS contribution 3.26 Total: 3.26 kcal Total: -26.82 -5.59 -32.41 kcal The number of atoms in the molecule is 23 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261252436.mol2 23 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 57.704 kcal (2) G-P(sol) polarization free energy of solvation -26.821 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 30.883 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.591 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -32.412 kcal (6) G-S(sol) free energy of system = (1) + (5) 25.292 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.16 seconds