Wall clock time and date at job start Mon Mar 30 2020 02:08:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30897 * 1 3 3 Si 1.86797 * 120.00483 * 2 1 4 4 H 1.48498 * 109.46943 * 274.98483 * 3 2 1 5 5 H 1.48508 * 109.46842 * 34.97869 * 3 2 1 6 6 H 1.48502 * 109.47497 * 154.97862 * 3 2 1 7 7 C 1.39998 * 119.99974 * 179.97438 * 2 1 3 8 8 H 1.07997 * 119.99759 * 173.95569 * 7 2 1 9 9 C 1.39627 * 119.99967 * 354.24369 * 7 2 1 10 10 N 1.33531 * 126.53306 * 5.05804 * 9 7 2 11 11 N 1.28615 * 109.91801 * 179.82428 * 10 9 7 12 12 C 1.33276 * 109.97975 * 0.45582 * 11 10 9 13 13 C 1.40150 * 132.96132 * 179.69843 * 12 11 10 14 14 C 1.36617 * 119.39638 * 180.02562 * 13 12 11 15 15 C 1.40432 * 119.66777 * 359.97438 * 14 13 12 16 16 O 1.35965 * 119.95932 * 179.97438 * 15 14 13 17 17 C 1.36049 * 120.08212 * 0.02562 * 15 14 13 18 18 N 1.36065 * 120.41237 * 359.96278 * 17 15 14 19 19 H 0.97001 * 119.99510 * 0.02562 * 1 2 3 20 20 H 1.07995 * 120.29898 * 0.05228 * 13 12 11 21 21 H 1.08004 * 120.16612 * 180.02562 * 14 13 12 22 22 H 0.96702 * 113.99558 * 90.00654 * 16 15 14 23 23 H 1.08001 * 119.79602 * 180.02562 * 17 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3090 0.0000 0.0000 3 14 2.2431 1.6176 0.0000 4 1 2.3853 2.1071 -1.3948 5 1 1.4971 2.6200 0.8027 6 1 3.5893 1.4120 0.5922 7 6 2.0090 -1.2124 0.0005 8 1 3.0844 -1.2150 -0.0979 9 6 1.3161 -2.4185 0.1224 10 7 -0.0098 -2.5742 0.1510 11 7 -0.3022 -3.8211 0.2688 12 6 0.8141 -4.5464 0.3334 13 6 1.0537 -5.9208 0.4670 14 6 2.3411 -6.3765 0.5048 15 6 3.4044 -5.4643 0.4089 16 8 4.6880 -5.9112 0.4463 17 6 3.1519 -4.1337 0.2797 18 7 1.8710 -3.6762 0.2415 19 1 -0.4849 0.8401 -0.0004 20 1 0.2281 -6.6133 0.5391 21 1 2.5400 -7.4331 0.6070 22 1 5.0546 -6.1274 -0.4220 23 1 3.9732 -3.4362 0.2059 RHF calculation, no. of doubly occupied orbitals= 36 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000261255587.mol2 23 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:08:53 Heat of formation + Delta-G solvation = 54.099288 kcal Electronic energy + Delta-G solvation = -12618.780899 eV Core-core repulsion = 10240.800803 eV Total energy + Delta-G solvation = -2377.980096 eV No. of doubly occupied orbitals = 36 Molecular weight (most abundant/longest-lived isotopes) = 205.059 amu Computer time = 0.16 seconds Orbital eigenvalues (eV) -41.54547 -38.18730 -35.32530 -33.92229 -32.52721 -29.08053 -28.50352 -25.65618 -22.97906 -21.88009 -21.00014 -18.26973 -17.54384 -16.52300 -15.73334 -15.15609 -15.03162 -14.43875 -13.96206 -13.46757 -12.63152 -12.15939 -11.60775 -11.46885 -11.18371 -10.91442 -10.57931 -10.23560 -10.17511 -9.97580 -9.43292 -8.72364 -8.08236 -7.21332 -6.83469 -4.64298 1.55488 2.18693 2.93623 2.98444 3.03335 3.60789 3.85550 3.97266 4.45968 4.77376 5.12963 5.21778 5.39546 5.73967 5.95311 6.34234 6.51721 6.74239 6.79588 7.01407 7.09464 7.37363 7.76248 7.96947 8.02769 8.51235 8.62803 10.08983 10.36338 Molecular weight = 205.06amu Principal moments of inertia in cm(-1) A = 0.045624 B = 0.010814 C = 0.008781 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 613.570251 B = 2588.660205 C = 3188.027281 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.730 5.730 2 C 0.074 3.926 3 Si 0.926 3.074 4 H -0.267 1.267 5 H -0.272 1.272 6 H -0.260 1.260 7 C -0.434 4.434 8 H 0.089 0.911 9 C 0.319 3.681 10 N -0.301 5.301 11 N -0.279 5.279 12 C 0.073 3.927 13 C -0.039 4.039 14 C -0.161 4.161 15 C 0.024 3.976 16 O -0.489 6.489 17 C 0.084 3.916 18 N -0.432 5.432 19 H 0.284 0.716 20 H 0.137 0.863 21 H 0.128 0.872 22 H 0.376 0.624 23 H 0.152 0.848 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.217 -4.567 -1.070 8.608 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.354 5.354 2 C -0.152 4.152 3 Si 0.750 3.250 4 H -0.192 1.192 5 H -0.197 1.197 6 H -0.184 1.184 7 C -0.473 4.473 8 H 0.107 0.893 9 C 0.081 3.919 10 N -0.148 5.148 11 N -0.125 5.125 12 C -0.175 4.175 13 C -0.061 4.061 14 C -0.186 4.186 15 C -0.026 4.026 16 O -0.296 6.296 17 C -0.042 4.042 18 N -0.121 5.121 19 H 0.095 0.905 20 H 0.154 0.846 21 H 0.146 0.854 22 H 0.229 0.771 23 H 0.169 0.831 Dipole moment (debyes) X Y Z Total from point charges 5.274 -3.864 -0.489 6.556 hybrid contribution 1.938 0.314 -0.477 2.021 sum 7.212 -3.550 -0.966 8.097 Atomic orbital electron populations 1.70029 1.07149 1.29263 1.28913 1.25845 0.95055 1.00976 0.93369 0.86001 0.80118 0.79695 0.79235 1.19221 1.19681 1.18406 1.18177 0.94688 0.87288 1.47154 0.89340 1.21698 0.89333 0.82850 0.98017 1.75742 1.07953 1.05122 1.25983 1.74753 1.21716 0.99860 1.16213 1.21508 0.85647 0.92669 1.17626 1.19804 0.96600 0.90819 0.98828 1.20900 0.91609 0.99371 1.06716 1.17284 0.84271 0.89991 1.11014 1.84906 1.24699 1.86329 1.33639 1.21475 0.86885 0.95465 1.00347 1.43499 1.05171 1.09179 1.54262 0.90527 0.84555 0.85440 0.77050 0.83075 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.73 -19.54 11.95 55.55 0.66 -18.88 14 2 C 0.07 1.84 5.49 -17.29 -0.09 1.74 14 3 Si 0.93 17.97 29.57 -169.99 -5.03 12.94 14 4 H -0.27 -5.06 7.11 56.52 0.40 -4.66 14 5 H -0.27 -5.18 7.11 56.52 0.40 -4.78 14 6 H -0.26 -4.91 7.11 56.52 0.40 -4.51 14 7 C -0.43 -11.31 9.26 -38.40 -0.36 -11.67 14 8 H 0.09 2.08 7.85 -52.49 -0.41 1.67 14 9 C 0.32 8.90 7.58 -154.84 -1.17 7.72 14 10 N -0.30 -9.04 10.50 31.23 0.33 -8.71 14 11 N -0.28 -7.85 12.31 31.14 0.38 -7.46 14 12 C 0.07 1.80 7.89 -155.60 -1.23 0.57 14 13 C -0.04 -0.75 10.09 -39.45 -0.40 -1.15 14 14 C -0.16 -2.75 10.02 -39.34 -0.39 -3.15 14 15 C 0.02 0.43 6.67 -39.54 -0.26 0.17 14 16 O -0.49 -7.14 13.50 -19.63 -0.26 -7.41 14 17 C 0.08 1.71 10.82 -16.46 -0.18 1.53 14 18 N -0.43 -10.70 2.99 -61.86 -0.18 -10.89 14 19 H 0.28 6.78 8.30 -40.82 -0.34 6.44 14 20 H 0.14 2.25 8.06 -52.49 -0.42 1.83 14 21 H 0.13 1.76 8.06 -52.48 -0.42 1.34 14 22 H 0.38 3.54 9.06 45.56 0.41 3.96 14 23 H 0.15 2.73 8.06 -52.49 -0.42 2.31 14 LS Contribution 219.34 15.07 3.31 3.31 Total: -1.00 -32.46 219.34 -5.28 -37.74 By element: Atomic # 1 Polarization: 3.99 SS G_CDS: -0.40 Total: 3.59 kcal Atomic # 6 Polarization: -0.15 SS G_CDS: -4.09 Total: -4.24 kcal Atomic # 7 Polarization: -47.13 SS G_CDS: 1.19 Total: -45.94 kcal Atomic # 8 Polarization: -7.14 SS G_CDS: -0.26 Total: -7.41 kcal Atomic # 14 Polarization: 17.97 SS G_CDS: -5.03 Total: 12.94 kcal Total LS contribution 3.31 Total: 3.31 kcal Total: -32.46 -5.28 -37.74 kcal The number of atoms in the molecule is 23 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261255587.mol2 23 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 91.844 kcal (2) G-P(sol) polarization free energy of solvation -32.462 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 59.382 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.282 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.745 kcal (6) G-S(sol) free energy of system = (1) + (5) 54.099 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.16 seconds