Wall clock time and date at job start Mon Mar 30 2020 02:08:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30897 * 1 3 3 Si 1.86797 * 120.00483 * 2 1 4 4 H 1.48498 * 109.46943 * 274.98483 * 3 2 1 5 5 H 1.48508 * 109.46842 * 34.97869 * 3 2 1 6 6 H 1.48502 * 109.47497 * 154.97862 * 3 2 1 7 7 C 1.39998 * 119.99974 * 179.97438 * 2 1 3 8 8 H 1.07997 * 119.99759 * 173.95569 * 7 2 1 9 9 C 1.39627 * 119.99967 * 354.24369 * 7 2 1 10 10 N 1.33531 * 126.53306 * 5.05804 * 9 7 2 11 11 N 1.28615 * 109.91801 * 179.82428 * 10 9 7 12 12 C 1.33276 * 109.97975 * 0.45582 * 11 10 9 13 13 C 1.40150 * 132.96132 * 179.69843 * 12 11 10 14 14 C 1.36617 * 119.39638 * 180.02562 * 13 12 11 15 15 C 1.40432 * 119.66777 * 359.97438 * 14 13 12 16 16 O 1.35965 * 119.95932 * 179.97438 * 15 14 13 17 17 C 1.36049 * 120.08212 * 0.02562 * 15 14 13 18 18 N 1.36065 * 120.41237 * 359.96278 * 17 15 14 19 19 H 0.97001 * 119.99510 * 0.02562 * 1 2 3 20 20 H 1.07995 * 120.29898 * 0.05228 * 13 12 11 21 21 H 1.08004 * 120.16612 * 180.02562 * 14 13 12 22 22 H 0.96702 * 113.99558 * 90.00654 * 16 15 14 23 23 H 1.08001 * 119.79602 * 180.02562 * 17 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3090 0.0000 0.0000 3 14 2.2431 1.6176 0.0000 4 1 2.3853 2.1071 -1.3948 5 1 1.4971 2.6200 0.8027 6 1 3.5893 1.4120 0.5922 7 6 2.0090 -1.2124 0.0005 8 1 3.0844 -1.2150 -0.0979 9 6 1.3161 -2.4185 0.1224 10 7 -0.0098 -2.5742 0.1510 11 7 -0.3022 -3.8211 0.2688 12 6 0.8141 -4.5464 0.3334 13 6 1.0537 -5.9208 0.4670 14 6 2.3411 -6.3765 0.5048 15 6 3.4044 -5.4643 0.4089 16 8 4.6880 -5.9112 0.4463 17 6 3.1519 -4.1337 0.2797 18 7 1.8710 -3.6762 0.2415 19 1 -0.4849 0.8401 -0.0004 20 1 0.2281 -6.6133 0.5391 21 1 2.5400 -7.4331 0.6070 22 1 5.0546 -6.1274 -0.4220 23 1 3.9732 -3.4362 0.2059 RHF calculation, no. of doubly occupied orbitals= 36 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261255587.mol2 23 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:08:53 Heat of formation + Delta-G solvation = 30.264860 kcal Electronic energy + Delta-G solvation = -12619.814438 eV Core-core repulsion = 10240.800803 eV Total energy + Delta-G solvation = -2379.013634 eV No. of doubly occupied orbitals = 36 Molecular weight (most abundant/longest-lived isotopes) = 205.059 amu Computer time = 0.17 seconds Orbital eigenvalues (eV) -43.38543 -39.65860 -36.89149 -35.76668 -34.23365 -30.90208 -30.17380 -27.50887 -24.61278 -23.59342 -22.88000 -19.78265 -19.24309 -18.27749 -17.29072 -16.87745 -16.76739 -15.95063 -15.57240 -15.08939 -14.11929 -13.65472 -13.24490 -13.12478 -12.97079 -12.65354 -12.05606 -11.95218 -11.87577 -11.58967 -11.13705 -10.65058 -9.87766 -8.98127 -8.64428 -6.58236 -0.01869 0.55672 1.39181 1.43476 1.57839 1.93119 2.19250 2.23932 2.69154 3.20256 3.35168 3.65353 3.94365 4.19944 4.43320 4.75645 4.82147 5.13831 5.19397 5.25768 5.38090 5.73504 6.02363 6.10460 6.63745 6.72828 6.93272 8.31201 8.44916 Molecular weight = 205.06amu Principal moments of inertia in cm(-1) A = 0.045624 B = 0.010814 C = 0.008781 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 613.570251 B = 2588.660205 C = 3188.027281 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.785 5.785 2 C 0.026 3.974 3 Si 1.012 2.988 4 H -0.258 1.258 5 H -0.268 1.268 6 H -0.248 1.248 7 C -0.463 4.463 8 H 0.105 0.895 9 C 0.287 3.713 10 N -0.357 5.357 11 N -0.343 5.343 12 C 0.087 3.913 13 C -0.070 4.070 14 C -0.118 4.118 15 C 0.058 3.942 16 O -0.484 6.484 17 C 0.043 3.957 18 N -0.436 5.436 19 H 0.289 0.711 20 H 0.166 0.834 21 H 0.180 0.820 22 H 0.408 0.592 23 H 0.167 0.833 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.181 -6.235 -0.980 11.979 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.409 5.409 2 C -0.195 4.195 3 Si 0.830 3.170 4 H -0.182 1.182 5 H -0.193 1.193 6 H -0.171 1.171 7 C -0.503 4.503 8 H 0.123 0.877 9 C 0.046 3.954 10 N -0.201 5.201 11 N -0.187 5.187 12 C -0.163 4.163 13 C -0.091 4.091 14 C -0.143 4.143 15 C 0.008 3.992 16 O -0.295 6.295 17 C -0.081 4.081 18 N -0.125 5.125 19 H 0.099 0.901 20 H 0.184 0.816 21 H 0.197 0.803 22 H 0.267 0.733 23 H 0.185 0.815 Dipole moment (debyes) X Y Z Total from point charges 8.250 -5.579 -0.420 9.968 hybrid contribution 1.254 0.432 -0.491 1.414 sum 9.504 -5.147 -0.911 10.847 Atomic orbital electron populations 1.70168 1.09394 1.30601 1.30761 1.27050 0.95774 1.04817 0.91863 0.84761 0.78715 0.73929 0.79611 1.18215 1.19276 1.17072 1.18659 0.95576 0.87584 1.48440 0.87660 1.22095 0.89392 0.84483 0.99418 1.75562 1.09725 1.06350 1.28496 1.74608 1.23534 0.99871 1.20728 1.22418 0.85150 0.94589 1.14189 1.20248 0.99053 0.88711 1.01102 1.21518 0.89987 1.01693 1.01078 1.17404 0.85927 0.88960 1.06929 1.84843 1.22718 1.85748 1.36161 1.22005 0.85720 0.97434 1.02911 1.43660 1.06693 1.08390 1.53718 0.90063 0.81627 0.80304 0.73319 0.81543 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.78 -44.26 11.95 21.84 0.26 -44.00 14 2 C 0.03 1.33 5.49 85.26 0.47 1.79 14 3 Si 1.01 37.22 29.57 68.60 2.03 39.25 14 4 H -0.26 -8.99 7.11 99.48 0.71 -8.28 14 5 H -0.27 -9.56 7.11 99.48 0.71 -8.85 14 6 H -0.25 -8.47 7.11 99.48 0.71 -7.77 14 7 C -0.46 -24.94 9.26 23.03 0.21 -24.73 14 8 H 0.11 5.01 7.85 -2.91 -0.02 4.99 14 9 C 0.29 16.72 7.58 133.19 1.01 17.73 14 10 N -0.36 -22.74 10.50 -55.11 -0.58 -23.32 14 11 N -0.34 -20.28 12.31 -55.39 -0.68 -20.96 14 12 C 0.09 4.35 7.89 133.65 1.05 5.40 14 13 C -0.07 -2.54 10.09 22.35 0.23 -2.31 14 14 C -0.12 -3.40 10.02 22.43 0.22 -3.18 14 15 C 0.06 1.79 6.67 22.30 0.15 1.93 14 16 O -0.48 -11.21 13.50 -93.15 -1.26 -12.47 14 17 C 0.04 1.68 10.82 83.53 0.90 2.59 14 18 N -0.44 -21.83 2.99 -349.63 -1.04 -22.87 14 19 H 0.29 14.57 8.30 -92.71 -0.77 13.80 14 20 H 0.17 4.97 8.06 -2.91 -0.02 4.95 14 21 H 0.18 3.49 8.06 -2.91 -0.02 3.47 14 22 H 0.41 5.01 9.06 -74.06 -0.67 4.33 14 23 H 0.17 5.75 8.06 -2.91 -0.02 5.72 14 Total: -1.00 -76.35 219.34 3.56 -72.79 By element: Atomic # 1 Polarization: 11.77 SS G_CDS: 0.59 Total: 12.35 kcal Atomic # 6 Polarization: -5.02 SS G_CDS: 4.25 Total: -0.77 kcal Atomic # 7 Polarization: -109.11 SS G_CDS: -2.04 Total: -111.16 kcal Atomic # 8 Polarization: -11.21 SS G_CDS: -1.26 Total: -12.47 kcal Atomic # 14 Polarization: 37.22 SS G_CDS: 2.03 Total: 39.25 kcal Total: -76.35 3.56 -72.79 kcal The number of atoms in the molecule is 23 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261255587.mol2 23 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 103.051 kcal (2) G-P(sol) polarization free energy of solvation -76.348 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 26.703 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.562 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.786 kcal (6) G-S(sol) free energy of system = (1) + (5) 30.265 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.18 seconds